Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0013185

Physical Location & Seq

Genomic Coordinates Reverse (-)

28944481 .. 28945633

Gene Structure 1153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G301700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGAAAACTCTGGTTTTCTCCTCACAACCATCTCTCTATCTTGCTTCAAAGTGTTCTCCATGGAACCCCAAAAGCCTGACCTTCAACCCCACAACCTTGCAAAACCAAAAACACAACAAAAGAACATATAAAATGCATGCCAATGCAAAGGGCTTTGGCAGTGCACCAGCCTCTACTAAAGAAAAGCCTACAAGCCAAAACTCCAACAAAAATGATCAGGATGGCGATGAGGAAATTCCACAGGCCGTTTTCGAGAGGATGCTGGTGAGAATTGTGGCCTCCGTGGGGCTGCCGATGGCCATGGGCTTTGCATTTTTGAACGTTTTTGAAGTGATTAAGGAGAAGCACTTGTGGGACGTGCCACTTTGGCTCCCATTCTTGACAACGTTGTTGACTTTTGGGTCGTCAACTCTTGGGATCGCATATGGAGCTTTGTCTACAAGTTGGGATGCAGAGAAGAAAGGTTCGATTCTTGGTTTTGAAGAAGCTCAAAGCAATTGGGTTGAGATGTGGAGTGAGGAAGATGAGAGCAATAGCAAAAAAAATGATGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3464

Protein Analysis

185

Amino Acids

20.53

Weight (kDa)

6.31

Isoelectric Point (pI)

51.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52780
fragaria_vesca	FvH4_7g30320
malus_domestica	MD01G1209300.v1.1 MD07G1279500.v1.1
prunus_persica	Prupe.2G301700_v2.0.a1
pyrus_communis	pycom01g21970 pycom07g25420
rosa_chinensis	RchiOBHm_Chr1g0378471
rosa_laevigata	RLG00000026434
rosa_multiflora	Rmu_sc0008712.1_g000014 Rmu_sc0028132.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280440
rosa_rugosa	Rorug01G0409100
rosa_samantha	Rh1AG430400 Rh1BG388300 Rh1CG401700 Rh1DG419300
rosa_wichuraiana	Rw1G037700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	400
AccI	GTMKAC	1 cut(s)	437
AclI	AACGTT	2 cut(s)	321, 386
AclWI	GGATC	1 cut(s)	425
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	1 cut(s)	234
AfiI	CCNNNNNNNGG	1 cut(s)	285
AgsI	TTSAA	5 cut(s)	48, 85, 319, 329, 482
AjiI	CACGTC	1 cut(s)	358
AluBI	AGCT	2 cut(s)	431, 488
AluI	AGCT	2 cut(s)	431, 488
Alw21I	GWGCWC	1 cut(s)	166
Alw44I	GTGCAC	1 cut(s)	162
AlwI	GGATC	1 cut(s)	425
AoxI	GGCC	3 cut(s)	243, 276, 297
ApaLI	GTGCAC	1 cut(s)	162
ApeKI	GCWGC	1 cut(s)	289
ApoI	RAATTY	1 cut(s)	234
AsuHPI	GGTGA	1 cut(s)	277
BaeGI	GKGCMC	1 cut(s)	166
BalI	TGGCCA	1 cut(s)	299
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	276
BccI	CCATC	4 cut(s)	37, 215, 289, 542
BceAI	ACGGC	1 cut(s)	230
BclI	TGATCA	1 cut(s)	214
BglI	GCCNNNNNGGC	1 cut(s)	367
BisI	GCNGC	1 cut(s)	290
BlsI	GCNGC	1 cut(s)	291
BmgBI	CACGTC	1 cut(s)	358
BmiI	GGNNCC	2 cut(s)	65, 371
BmsI	GCATC	2 cut(s)	249, 439
BsaJI	CCNNGG	3 cut(s)	59, 282, 300
BsaXI	ACNNNNNCTCC	2 cut(s)	354, 384
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
BseDI	CCNNGG	3 cut(s)	59, 282, 300
BseGI	GGATG	3 cut(s)	226, 264, 454
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseRI	GAGGAG	1 cut(s)	10
BseSI	GKGCMC	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	276
BshFI	GGCC	3 cut(s)	245, 278, 299
BsiHKAI	GWGCWC	1 cut(s)	166
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	1 cut(s)	285
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	3 cut(s)	245, 278, 299
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	214, 417
Bsp19I	CCATGG	2 cut(s)	59, 300
BspANI	GGCC	3 cut(s)	245, 278, 299
BspLI	GGNNCC	2 cut(s)	65, 371
BspPI	GGATC	1 cut(s)	425
BssECI	CCNNGG	3 cut(s)	59, 282, 300
BssMI	GATC	2 cut(s)	214, 417
BssT1I	CCWWGG	2 cut(s)	59, 300
BstC8I	GCNNGC	1 cut(s)	138
BstDSI	CCRYGG	3 cut(s)	59, 282, 300
BstF5I	GGATG	3 cut(s)	226, 264, 454
BstKTI	GATC	2 cut(s)	217, 420
BstMBI	GATC	2 cut(s)	214, 417
BstMWI	GCNNNNNNNGC	2 cut(s)	367, 428
BstNSI	RCATGY	1 cut(s)	140
BstSLI	GKGCMC	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	276
BsuRI	GGCC	3 cut(s)	245, 278, 299
BtgI	CCRYGG	3 cut(s)	59, 282, 300
BtgZI	GCGATG	1 cut(s)	240
BtrI	CACGTC	1 cut(s)	358
BtsCI	GGATG	3 cut(s)	226, 264, 454
BtsI	GCAGTG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	138
CviAII	CATG	3 cut(s)	60, 137, 301
DpnI	GATC	2 cut(s)	216, 419
DpnII	GATC	2 cut(s)	214, 417
DrdI	GACNNNNNNGTC	1 cut(s)	400
DseDI	GACNNNNNNGTC	1 cut(s)	400
EaeI	YGGCCR	1 cut(s)	297
Eco130I	CCWWGG	2 cut(s)	59, 300
EcoT14I	CCWWGG	2 cut(s)	59, 300
EcoT22I	ATGCAT	1 cut(s)	138
ErhI	CCWWGG	2 cut(s)	59, 300
FaeI	CATG	3 cut(s)	63, 140, 304
FaiI	YATR	7 cut(s)	61, 127, 129, 138, 302, 424, 426
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	3 cut(s)	59, 136, 300
FauNDI	CATATG	1 cut(s)	424
FbaI	TGATCA	1 cut(s)	214
FblI	GTMKAC	1 cut(s)	437
Fnu4HI	GCNGC	1 cut(s)	290
FokI	GGATG	3 cut(s)	233, 271, 461
Fsp4HI	GCNGC	1 cut(s)	290
GluI	GCNGC	1 cut(s)	290
HaeIII	GGCC	3 cut(s)	245, 278, 299
Hin1II	CATG	3 cut(s)	63, 140, 304
HincII	GTYRAC	2 cut(s)	393, 408
HindII	GTYRAC	2 cut(s)	393, 408
HinfI	GANTC	1 cut(s)	469
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	4 cut(s)	164, 393, 408, 438
Hpy188III	TCNNGA	3 cut(s)	218, 253, 379
Hpy8I	GTNNAC	4 cut(s)	164, 393, 408, 438
HpyAV	CCTTC	1 cut(s)	91
HpyCH4IV	ACGT	3 cut(s)	321, 357, 386
HpyCH4V	TGCA	6 cut(s)	100, 136, 146, 164, 311, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	367, 428
HpySE526I	ACGT	3 cut(s)	321, 357, 386
Hsp92II	CATG	3 cut(s)	63, 140, 304
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	214, 417
LmnI	GCTCC	2 cut(s)	375, 428
LpnPI	CCDG	5 cut(s)	89, 180, 203, 227, 248
Lsp1109I	GCAGC	1 cut(s)	276
LweI	GCATC	2 cut(s)	249, 439
MaeII	ACGT	3 cut(s)	321, 357, 386
MalI	GATC	2 cut(s)	216, 419
MboI	GATC	2 cut(s)	214, 417
MboII	GAAGA	3 cut(s)	469, 494, 533
MfeI	CAATTG	1 cut(s)	496
MhlI	GDGCHC	1 cut(s)	166
MlsI	TGGCCA	1 cut(s)	299
MluCI	AATT	3 cut(s)	234, 270, 496
MluNI	TGGCCA	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	6 cut(s)	31, 181, 223, 249, 289, 511
Mox20I	TGGCCA	1 cut(s)	299
Mph1103I	ATGCAT	1 cut(s)	138
MscI	TGGCCA	1 cut(s)	299
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	1 cut(s)	141
Msp20I	TGGCCA	1 cut(s)	299
MunI	CAATTG	1 cut(s)	496
MwoI	GCNNNNNNNGC	2 cut(s)	367, 428
NcoI	CCATGG	2 cut(s)	59, 300
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	2 cut(s)	214, 417
NlaIII	CATG	3 cut(s)	63, 140, 304
NlaIV	GGNNCC	2 cut(s)	65, 371
NsiI	ATGCAT	1 cut(s)	138
NspI	RCATGY	1 cut(s)	140
PaeI	GCATGC	1 cut(s)	140
PfeI	GAWTC	1 cut(s)	469
PkrI	GCNGC	1 cut(s)	291
Psp1406I	AACGTT	2 cut(s)	321, 386
PspN4I	GGNNCC	2 cut(s)	65, 371
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	1 cut(s)	290
Sau3AI	GATC	2 cut(s)	214, 417
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	8 cut(s)	83, 98, 324, 360, 389, 433, 466, 490
SfaNI	GCATC	2 cut(s)	249, 439
SmiMI	CAYNNNNRTG	1 cut(s)	141
SphI	GCATGC	1 cut(s)	140
Sse9I	AATT	3 cut(s)	234, 270, 496
StyI	CCWWGG	2 cut(s)	59, 300
TaiI	ACGT	3 cut(s)	324, 360, 389
TaqI	TCGA	2 cut(s)	252, 467
TasI	AATT	3 cut(s)	234, 270, 496
TfiI	GAWTC	1 cut(s)	469
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	1 cut(s)	166
TseI	GCWGC	1 cut(s)	289
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	271
TspRI	CASTG	1 cut(s)	166
VneI	GTGCAC	1 cut(s)	162
XapI	RAATTY	1 cut(s)	234
XceI	RCATGY	1 cut(s)	140
XmiI	GTMKAC	1 cut(s)	437
Zsp2I	ATGCAT	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.