Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0013185

Physical Location & Seq

Genomic Coordinates Reverse (-)

30347862 .. 30348416

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1209300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGAAAACTCTGATTTTTTCCTCCCAACCATCTCTCTATCTTCCAAACTCTTTGCCATGGAAGCCCAAAACCCTAACCTTCCACCCCACAACCTTGCAGAACCTAGGCCACCTTAAAAGAAGTGCATACAAAACACATGCAAATGCAAAAGGCTTTGGCAGTGCACCACCAGCCACGACAAAGGAAATGCCTACAAGCAAAAACTCCGGCAAAAATGATAACAACGACGGCGATGAGGAAGTTCCACAGGTCGTTTTCGAGAGGATGCTAGTGAGAATTATCGCCGCTGTGGGCCTACCTTTGGCCACTGGCTTTGCGTTTTTGAAAGTTTTTGATGCGGTTAAGGAGAAGCACTTGTGGGATGTGCCACTTTGGCTACCATTCTTGACGACCTTGTTGACTTTTGGGGCTTCGGCTCTTGGGATTGCGTATGGGGCATTGTCTACAAGTTGGGATGCAGAGAAGAAGGGTTCAGTTCTTGGATTAGAAGAAGCTCAAAGCAATTGGGTTGAGATGTGGAGGGAGGAAGATGAGAGTAATAATAGTAATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3464

Protein Analysis

185

Amino Acids

20.33

Weight (kDa)

6.92

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3464	PF11947	57 - 175	4.5e-40	Photosynthesis affected mutant 68

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52780
fragaria_vesca	FvH4_7g30320
malus_domestica	MD01G1209300.v1.1 MD07G1279500.v1.1
prunus_persica	Prupe.2G301700_v2.0.a1
pyrus_communis	pycom01g21970 pycom07g25420
rosa_chinensis	RchiOBHm_Chr1g0378471
rosa_laevigata	RLG00000026434
rosa_multiflora	Rmu_sc0008712.1_g000014 Rmu_sc0028132.1_g000001
rosa_roxburghii	Rroxscaffold_4G00280440
rosa_rugosa	Rorug01G0409100
rosa_samantha	Rh1AG430400 Rh1BG388300 Rh1CG401700 Rh1DG419300
rosa_wichuraiana	Rw1G037700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	443
AciI	CCGC	2 cut(s)	285, 338
AcoI	YGGCCR	1 cut(s)	303
AfiI	CCNNNNNNNGG	1 cut(s)	301
AgsI	TTSAA	1 cut(s)	325
AluBI	AGCT	1 cut(s)	494
AluI	AGCT	1 cut(s)	494
Alw21I	GWGCWC	1 cut(s)	166
Alw44I	GTGCAC	1 cut(s)	162
AoxI	GGCC	3 cut(s)	106, 292, 303
ApaLI	GTGCAC	1 cut(s)	162
AspA2I	CCTAGG	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	292
AvrII	CCTAGG	1 cut(s)	103
BaeGI	GKGCMC	1 cut(s)	166
BalI	TGGCCA	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	166
BccI	CCATC	1 cut(s)	37
BceAI	ACGGC	1 cut(s)	244
BfaI	CTAG	2 cut(s)	104, 269
BglI	GCCNNNNNGGC	1 cut(s)	373
BisI	GCNGC	1 cut(s)	285
BlnI	CCTAGG	1 cut(s)	103
BlsI	GCNGC	1 cut(s)	286
BmgT120I	GGNCC	1 cut(s)	292
BmsI	GCATC	3 cut(s)	255, 325, 445
BsaJI	CCNNGG	2 cut(s)	56, 103
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse1I	ACTGG	1 cut(s)	313
BseDI	CCNNGG	2 cut(s)	56, 103
BseGI	GGATG	3 cut(s)	270, 367, 460
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseNI	ACTGG	1 cut(s)	313
BseSI	GKGCMC	1 cut(s)	166
BshFI	GGCC	3 cut(s)	108, 294, 305
BsiHKAI	GWGCWC	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	207
BslI	CCNNNNNNNGG	1 cut(s)	301
BsnI	GGCC	3 cut(s)	108, 294, 305
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp19I	CCATGG	1 cut(s)	56
BspACI	CCGC	2 cut(s)	285, 338
BspANI	GGCC	3 cut(s)	108, 294, 305
BsrI	ACTGG	1 cut(s)	313
BssECI	CCNNGG	2 cut(s)	56, 103
BssT1I	CCWWGG	2 cut(s)	56, 103
BstDSI	CCRYGG	1 cut(s)	56
BstF5I	GGATG	3 cut(s)	270, 367, 460
BstMWI	GCNNNNNNNGC	4 cut(s)	61, 170, 373, 434
BstNSI	RCATGY	1 cut(s)	140
BstSLI	GKGCMC	1 cut(s)	166
BsuRI	GGCC	3 cut(s)	108, 294, 305
BtgI	CCRYGG	1 cut(s)	56
BtgZI	GCGATG	1 cut(s)	246
BtsCI	GGATG	3 cut(s)	270, 367, 460
BtsI	GCAGTG	1 cut(s)	166
BtsIMutI	CAGTG	2 cut(s)	166, 306
Cfr13I	GGNCC	1 cut(s)	292
CspCI	CAANNNNNGTGG	2 cut(s)	295, 330
CviAII	CATG	2 cut(s)	57, 137
EaeI	YGGCCR	1 cut(s)	303
Eco130I	CCWWGG	2 cut(s)	56, 103
EcoT14I	CCWWGG	2 cut(s)	56, 103
ErhI	CCWWGG	2 cut(s)	56, 103
FaeI	CATG	2 cut(s)	60, 140
FaiI	YATR	4 cut(s)	58, 127, 138, 432
FatI	CATG	2 cut(s)	56, 136
FblI	GTMKAC	1 cut(s)	443
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	3 cut(s)	277, 374, 467
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	2 cut(s)	104, 269
GluI	GCNGC	1 cut(s)	285
HaeIII	GGCC	3 cut(s)	108, 294, 305
HapII	CCGG	1 cut(s)	207
Hin1II	CATG	2 cut(s)	60, 140
HincII	GTYRAC	1 cut(s)	399
HindII	GTYRAC	1 cut(s)	399
HpaII	CCGG	1 cut(s)	207
Hpy166II	GTNNAC	3 cut(s)	164, 399, 444
Hpy188I	TCNGA	1 cut(s)	12
Hpy188III	TCNNGA	2 cut(s)	259, 385
Hpy8I	GTNNAC	3 cut(s)	164, 399, 444
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	2 cut(s)	88, 460
HpyCH4V	TGCA	6 cut(s)	97, 125, 140, 146, 164, 458
HpyF10VI	GCNNNNNNNGC	4 cut(s)	61, 170, 373, 434
Hsp92II	CATG	2 cut(s)	60, 140
LpnPI	CCDG	4 cut(s)	183, 220, 233, 294
LweI	GCATC	3 cut(s)	255, 325, 445
MaeI	CTAG	2 cut(s)	104, 269
MboII	GAAGA	4 cut(s)	32, 475, 500, 539
MfeI	CAATTG	1 cut(s)	502
MhlI	GDGCHC	1 cut(s)	166
MlsI	TGGCCA	1 cut(s)	305
MluCI	AATT	2 cut(s)	276, 502
MluNI	TGGCCA	1 cut(s)	305
MnlI	CCTC	5 cut(s)	31, 229, 255, 513, 517
Mox20I	TGGCCA	1 cut(s)	305
MscI	TGGCCA	1 cut(s)	305
MseI	TTAA	2 cut(s)	114, 342
MslI	CAYNNNNRTG	1 cut(s)	141
Msp20I	TGGCCA	1 cut(s)	305
MspA1I	CMGCKG	1 cut(s)	287
MspI	CCGG	1 cut(s)	207
MunI	CAATTG	1 cut(s)	502
MwoI	GCNNNNNNNGC	4 cut(s)	61, 170, 373, 434
NcoI	CCATGG	1 cut(s)	56
NlaIII	CATG	2 cut(s)	60, 140
NspI	RCATGY	1 cut(s)	140
PkrI	GCNGC	1 cut(s)	286
PspPI	GGNCC	1 cut(s)	292
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	2 cut(s)	114, 342
SatI	GCNGC	1 cut(s)	285
Sau96I	GGNCC	1 cut(s)	292
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	8 cut(s)	80, 95, 105, 114, 252, 301, 395, 496
SfaNI	GCATC	3 cut(s)	255, 325, 445
SmiMI	CAYNNNNRTG	1 cut(s)	141
Sse9I	AATT	2 cut(s)	276, 502
SsiI	CCGC	2 cut(s)	285, 338
SspMI	CTAG	2 cut(s)	104, 269
StyI	CCWWGG	2 cut(s)	56, 103
TaqI	TCGA	1 cut(s)	258
TasI	AATT	2 cut(s)	276, 502
TauI	GCSGC	1 cut(s)	287
Tru1I	TTAA	2 cut(s)	114, 342
Tru9I	TTAA	2 cut(s)	114, 342
TscAI	CASTG	2 cut(s)	166, 313
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	166, 313
VneI	GTGCAC	1 cut(s)	162
XceI	RCATGY	1 cut(s)	140
XmaJI	CCTAGG	1 cut(s)	103
XmiI	GTMKAC	1 cut(s)	443
XspI	CTAG	2 cut(s)	104, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.