Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010215

Physical Location & Seq

Genomic Coordinates Forward (+)

21413591 .. 21415006

Gene Structure 1416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G52840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTTTCTACGGGCAATCGGACGGCCATTATTGGCTAAAGTGAAGCAGACGACGGGGATCGTCGGGCTTGACGTTGTTCCCAACGCGAGAGCGGTGCTGATCGATCTCTACAGCAAAACCCTAAAGGAGATCCAAGCTGTGCCGGAGGATGAAGGGTACCGTAAAGCGGTGGAATCATTCACGCGCCAACGTCTCAATGTGTGCAAGGAAGAAGAAGATTGGGAGATGATTGAGAAGCGGCTTGGTTGTGGTCAAGTCGAAGAGCTTATCGAAGAGGCTCGCGATGAGCTCACACTCATTGGGAAAATGATTGAGTGGGATCCTTGGGGTGTACCAGATGATTACGAGTGTGAAGTGATTGAGAATGATGCGCCGATTCCAAAGCATGTTCCTCAGCACCGACCTGGTCCTCTTCCTGAGCAGTTCTATAAAACGCTTGAAGGTCTAATTGCAGAGTCTAAAACAGAGATCCCAGCTGCTACACCCAGCGATCCGCAGTTGAAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

ETC_C1_NDUFA5

Protein Analysis

169

Amino Acids

19.18

Weight (kDa)

4.73

Isoelectric Point (pI)

55.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ETC_C1_NDUFA5	PF04716	22 - 88	2.7e-27	ETC complex I subunit conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52840
fragaria_vesca	FvH4_7g30480
malus_domestica	MD01G1210300.v1.1 MD07G1280400.v1.1
prunus_persica	Prupe.2G302600_v2.0.a1
pyrus_communis	pycom01g22080 pycom07g25500
rosa_chinensis	RchiOBHm_Chr1g0378851
rosa_laevigata	RLG00000026414
rosa_multiflora	Rmu_sc0000556.1_g000040 Rmu_sc0002133.1_g000003 Rmu_sc0013199.1_g000013
rosa_roxburghii	Rroxscaffold_4G00280320
rosa_rugosa	Rorug01G0410500
rosa_samantha	Rh1AG432800 Rh1BG391000 Rh1CG403700 Rh1DG422100
rosa_wichuraiana	Rw0G009120 Rw1G027090 Rw1G037840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	156
AccB1I	GGYRCC	1 cut(s)	156
AccBSI	CCGCTC	1 cut(s)	92
AccII	CGCG	3 cut(s)	86, 184, 282
AciI	CCGC	4 cut(s)	92, 167, 238, 494
AclWI	GGATC	6 cut(s)	65, 124, 314, 327, 463, 485
AcoI	YGGCCR	1 cut(s)	23
AfaI	GTAC	2 cut(s)	158, 333
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgsI	TTSAA	2 cut(s)	440, 502
AjnI	CCWGG	1 cut(s)	403
AluBI	AGCT	4 cut(s)	137, 265, 289, 476
AluI	AGCT	4 cut(s)	137, 265, 289, 476
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	6 cut(s)	65, 124, 314, 327, 463, 485
AoxI	GGCC	1 cut(s)	23
ApeKI	GCWGC	1 cut(s)	476
Asp718I	GGTACC	1 cut(s)	156
AspLEI	GCGC	2 cut(s)	186, 373
AspS9I	GGNCC	1 cut(s)	407
AvaII	GGWCC	1 cut(s)	407
BamHI	GGATCC	1 cut(s)	319
BanI	GGYRCC	1 cut(s)	156
BanII	GRGCYC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	291
BbvCI	CCTCAGC	1 cut(s)	393
BbvI	GCAGC	1 cut(s)	463
BceAI	ACGGC	1 cut(s)	38
BcgI	CGANNNNNNTGC	2 cut(s)	76, 110
BciT130I	CCWGG	1 cut(s)	405
BcoDI	GTCTC	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	109
BisI	GCNGC	2 cut(s)	239, 477
BlsI	GCNGC	2 cut(s)	240, 478
Bme1390I	CCNGG	1 cut(s)	405
Bme18I	GGWCC	1 cut(s)	407
BmgT120I	GGNCC	1 cut(s)	407
BmiI	GGNNCC	2 cut(s)	158, 321
BmrFI	CCNGG	1 cut(s)	405
BmsI	GCATC	1 cut(s)	358
Bpu10I	CCTNAGC	2 cut(s)	393, 417
Bsa29I	ATCGAT	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
BseBI	CCWGG	1 cut(s)	405
BseCI	ATCGAT	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	323
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	2 cut(s)	407, 408
BseXI	GCAGC	1 cut(s)	463
BseYI	CCCAGC	2 cut(s)	472, 485
Bsh1236I	CGCG	3 cut(s)	86, 184, 282
BshFI	GGCC	1 cut(s)	25
BshNI	GGYRCC	1 cut(s)	156
BshVI	ATCGAT	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	291
BsiSI	CCGG	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	197
BsmBI	CGTCTC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	7 cut(s)	57, 99, 103, 129, 319, 468, 490
Bsp68I	TCGCGA	1 cut(s)	282
BspACI	CCGC	4 cut(s)	92, 167, 238, 494
BspANI	GGCC	1 cut(s)	25
BspCNI	CTCAG	2 cut(s)	406, 409
BspDI	ATCGAT	1 cut(s)	102
BspFNI	CGCG	3 cut(s)	86, 184, 282
BspLI	GGNNCC	2 cut(s)	158, 321
BspPI	GGATC	6 cut(s)	65, 124, 314, 327, 463, 485
BspQI	GCTCTTC	1 cut(s)	255
BspT107I	GGYRCC	1 cut(s)	156
BsrBI	CCGCTC	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	323
BssMI	GATC	7 cut(s)	57, 99, 103, 129, 319, 468, 490
BssT1I	CCWWGG	1 cut(s)	323
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	3 cut(s)	255, 267, 417
BstC8I	GCNNGC	1 cut(s)	280
BstDEI	CTNAG	2 cut(s)	393, 417
BstF5I	GGATG	1 cut(s)	154
BstFNI	CGCG	3 cut(s)	86, 184, 282
BstHHI	GCGC	2 cut(s)	186, 373
BstKTI	GATC	7 cut(s)	60, 102, 106, 132, 322, 471, 493
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	7 cut(s)	57, 99, 103, 129, 319, 468, 490
BstNI	CCWGG	1 cut(s)	405
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	403
BstSFI	CTRYAG	1 cut(s)	109
BstUI	CGCG	3 cut(s)	86, 184, 282
BstV1I	GCAGC	1 cut(s)	463
BstX2I	RGATCY	3 cut(s)	129, 319, 468
BstYI	RGATCY	3 cut(s)	129, 319, 468
Bsu15I	ATCGAT	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	25
BsuTUI	ATCGAT	1 cut(s)	102
BtgZI	GCGATG	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	154
BtuMI	TCGCGA	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	280
CfoI	GCGC	2 cut(s)	186, 373
Cfr13I	GGNCC	1 cut(s)	407
ClaI	ATCGAT	1 cut(s)	102
CsiI	ACCWGGT	1 cut(s)	403
Csp6I	GTAC	2 cut(s)	157, 332
CviAII	CATG	1 cut(s)	386
CviJI	RGCY	9 cut(s)	25, 35, 67, 137, 241, 265, 278, 289, 476
CviKI_1	RGCY	9 cut(s)	25, 35, 67, 137, 241, 265, 278, 289, 476
CviQI	GTAC	2 cut(s)	157, 332
DdeI	CTNAG	2 cut(s)	393, 417
DpnI	GATC	7 cut(s)	59, 101, 105, 131, 321, 470, 492
DpnII	GATC	7 cut(s)	57, 99, 103, 129, 319, 468, 490
EaeI	YGGCCR	1 cut(s)	23
Eam1104I	CTCTTC	3 cut(s)	255, 267, 417
EarI	CTCTTC	3 cut(s)	255, 267, 417
Ecl136II	GAGCTC	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	323
Eco24I	GRGCYC	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	407
Eco53kI	GAGCTC	1 cut(s)	289
EcoICRI	GAGCTC	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	403
EcoT14I	CCWWGG	1 cut(s)	323
EcoT38I	GRGCYC	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	323
Esp3I	CGTCTC	1 cut(s)	197
FaeI	CATG	1 cut(s)	389
FaiI	YATR	2 cut(s)	387, 429
FatI	CATG	1 cut(s)	385
Fnu4HI	GCNGC	2 cut(s)	239, 477
FokI	GGATG	1 cut(s)	161
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	2 cut(s)	239, 477
GlaI	GCGC	2 cut(s)	185, 372
GluI	GCNGC	2 cut(s)	239, 477
GsaI	CCCAGC	2 cut(s)	476, 489
HaeIII	GGCC	1 cut(s)	25
HapII	CCGG	1 cut(s)	143
HhaI	GCGC	2 cut(s)	186, 373
Hin1II	CATG	1 cut(s)	389
Hin6I	GCGC	2 cut(s)	184, 371
HinP1I	GCGC	2 cut(s)	184, 371
HinfI	GANTC	3 cut(s)	173, 376, 455
HpaII	CCGG	1 cut(s)	143
Hpy166II	GTNNAC	1 cut(s)	332
Hpy188I	TCNGA	1 cut(s)	20
Hpy188III	TCNNGA	2 cut(s)	281, 416
Hpy8I	GTNNAC	1 cut(s)	332
Hpy99I	CGWCG	2 cut(s)	55, 65
HpyAV	CCTTC	3 cut(s)	146, 434, 496
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4IV	ACGT	2 cut(s)	72, 190
HpyCH4V	TGCA	2 cut(s)	204, 452
HpyF3I	CTNAG	2 cut(s)	393, 417
HpySE526I	ACGT	2 cut(s)	72, 190
Hsp92II	CATG	1 cut(s)	389
HspAI	GCGC	2 cut(s)	184, 371
KpnI	GGTACC	1 cut(s)	160
Kzo9I	GATC	7 cut(s)	57, 99, 103, 129, 319, 468, 490
LguI	GCTCTTC	1 cut(s)	255
LpnPI	CCDG	7 cut(s)	156, 348, 390, 417, 429, 486, 499
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	1 cut(s)	358
MabI	ACCWGGT	1 cut(s)	403
MaeII	ACGT	2 cut(s)	72, 190
MalI	GATC	7 cut(s)	59, 101, 105, 131, 321, 470, 492
MbiI	CCGCTC	1 cut(s)	92
MboI	GATC	7 cut(s)	57, 99, 103, 129, 319, 468, 490
MboII	GAAGA	6 cut(s)	221, 224, 227, 272, 284, 404
MflI	RGATCY	3 cut(s)	129, 319, 468
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	1 cut(s)	447
MlyI	GAGTC	1 cut(s)	464
MnlI	CCTC	4 cut(s)	139, 268, 402, 420
MspA1I	CMGCKG	1 cut(s)	476
MspI	CCGG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	405
MvaI	CCWGG	1 cut(s)	405
MvnI	CGCG	3 cut(s)	86, 184, 282
NdeII	GATC	7 cut(s)	57, 99, 103, 129, 319, 468, 490
NlaIII	CATG	1 cut(s)	389
NlaIV	GGNNCC	2 cut(s)	158, 321
NruI	TCGCGA	1 cut(s)	282
NspI	RCATGY	1 cut(s)	389
PciSI	GCTCTTC	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	173, 376
PflFI	GACNNNGTC	1 cut(s)	405
PkrI	GCNGC	2 cut(s)	240, 478
PleI	GAGTC	1 cut(s)	463
PpsI	GAGTC	1 cut(s)	463
Psp124BI	GAGCTC	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	403
PspFI	CCCAGC	2 cut(s)	472, 485
PspGI	CCWGG	1 cut(s)	403
PspN4I	GGNNCC	2 cut(s)	158, 321
PspPI	GGNCC	1 cut(s)	407
PsuI	RGATCY	3 cut(s)	129, 319, 468
PsyI	GACNNNGTC	1 cut(s)	405
PvuII	CAGCTG	1 cut(s)	476
RruI	TCGCGA	1 cut(s)	282
RsaI	GTAC	2 cut(s)	158, 333
RsaNI	GTAC	2 cut(s)	157, 332
SacI	GAGCTC	1 cut(s)	291
SapI	GCTCTTC	1 cut(s)	255
SatI	GCNGC	2 cut(s)	239, 477
Sau3AI	GATC	7 cut(s)	57, 99, 103, 129, 319, 468, 490
Sau96I	GGNCC	1 cut(s)	407
SchI	GAGTC	1 cut(s)	464
ScrFI	CCNGG	1 cut(s)	405
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	8 cut(s)	75, 139, 193, 267, 291, 406, 445, 478
SexAI	ACCWGGT	1 cut(s)	403
SfaNI	GCATC	1 cut(s)	358
SfcI	CTRYAG	1 cut(s)	109
SinI	GGWCC	1 cut(s)	407
Sse9I	AATT	1 cut(s)	447
SsiI	CCGC	4 cut(s)	92, 167, 238, 494
SstI	GAGCTC	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	403
StyI	CCWWGG	1 cut(s)	323
TaaI	ACNGT	1 cut(s)	161
TaiI	ACGT	2 cut(s)	75, 193
TaqI	TCGA	3 cut(s)	102, 258, 270
TasI	AATT	1 cut(s)	447
TauI	GCSGC	1 cut(s)	241
TfiI	GAWTC	2 cut(s)	173, 376
TseI	GCWGC	1 cut(s)	476
TspDTI	ATGAA	1 cut(s)	165
Tth111I	GACNNNGTC	1 cut(s)	405
VpaK11BI	GGWCC	1 cut(s)	407
XceI	RCATGY	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.