Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010215

Physical Location & Seq

Genomic Coordinates Reverse (-)

51586696 .. 51588256

Gene Structure 1561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0410500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGGGAGGAGACCTGCGAGGTGCTACCGTCAGATCAAGAACAAGCCCTACCCCAAGTCACGGTTCTGTCGTGGTGTCCCTGATCCTAAGATCAGAATTTATGATGTTGGGATGAAGAAGAAGGGTGTTGATGAGTTCCCCTTCTGTGTCCATCTTGTGAGTTGGGAGAAGGAAAATGTGTCGAGTGAGGCGCTTGAGGCTGCTCGTATTGCCTGCAACAAGTACATGACTAAGTTTGCTGGGAAGGATGCGTTCCATTTGAGAGTCAGGGTGCATCCGTTCCATGTTCTCCGCATCAACAAGATGCTTTCATGTGCTGGGGCTGATAGGCTCCAGACTGGAATGAGGGGTGCTTTTGGAAAGCCACTAGGAACATGTGCTCGAGTTGCTATTGGACAGGTTCTTCTTTCTGTTCGCTGCAGGGATGCCAACGGTCATCATGCACAGGAGGCCCTCCGACGTGCAAAGTTCAAGTTTCCTGGTCGCCAAAAGATCATTGTCAGCAGGAAGTGGGGATTCACCAAGTTTAACCGTAATGATTACTTGAAGTTCAAGGCTGAGGGCAAAGTTCAACCAGATGGTGTTAATGCTAAGCTTTATGGATGCCATGGTGCTTTAGCTAACCGTCCACCTGGAAAAGCTTTCCTGCCTCAAGCCGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

ETC_C1_NDUFA5

Protein Analysis

221

Amino Acids

24.93

Weight (kDa)

10.4

Isoelectric Point (pI)

33.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L16	PF00252	12 - 166	2.5e-35	Ribosomal protein L16p/L10e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52840
fragaria_vesca	FvH4_7g30480
malus_domestica	MD01G1210300.v1.1 MD07G1280400.v1.1
prunus_persica	Prupe.2G302600_v2.0.a1
pyrus_communis	pycom01g22080 pycom07g25500
rosa_chinensis	RchiOBHm_Chr1g0378851
rosa_laevigata	RLG00000026414
rosa_multiflora	Rmu_sc0000556.1_g000040 Rmu_sc0002133.1_g000003 Rmu_sc0013199.1_g000013
rosa_roxburghii	Rroxscaffold_4G00280320
rosa_rugosa	Rorug01G0410500
rosa_samantha	Rh1AG432800 Rh1BG391000 Rh1CG403700 Rh1DG422100
rosa_wichuraiana	Rw0G009120 Rw1G027090 Rw1G037840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	22
AciI	CCGC	1 cut(s)	292
AclWI	GGATC	1 cut(s)	77
AcsI	RAATTY	1 cut(s)	96
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	60
AflIII	ACRYGT	1 cut(s)	374
AgsI	TTSAA	4 cut(s)	472, 547, 553, 572
AjiI	CACGTC	1 cut(s)	461
AjnI	CCWGG	2 cut(s)	478, 631
AjuI	GAANNNNNNNTTGG	2 cut(s)	47, 79
AluBI	AGCT	3 cut(s)	595, 620, 641
AluI	AGCT	3 cut(s)	595, 620, 641
Alw21I	GWGCWC	1 cut(s)	382
Alw26I	GTCTC	1 cut(s)	4
AlwI	GGATC	1 cut(s)	77
Ama87I	CYCGRG	1 cut(s)	381
AoxI	GGCC	1 cut(s)	450
ApeKI	GCWGC	2 cut(s)	200, 417
ApoI	RAATTY	1 cut(s)	96
AspLEI	GCGC	1 cut(s)	193
AspS9I	GGNCC	1 cut(s)	451
AsuHPI	GGTGA	1 cut(s)	511
AvaI	CYCGRG	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	382
BbvCI	CCTCAGC	1 cut(s)	558
BbvI	GCAGC	2 cut(s)	187, 404
BccI	CCATC	2 cut(s)	159, 572
BceAI	ACGGC	1 cut(s)	641
BciT130I	CCWGG	2 cut(s)	480, 633
BcoDI	GTCTC	1 cut(s)	4
BfaI	CTAG	1 cut(s)	368
BfmI	CTRYAG	1 cut(s)	418
BfoI	RGCGCY	1 cut(s)	194
BfuAI	ACCTGC	1 cut(s)	22
BisI	GCNGC	2 cut(s)	201, 418
BlpI	GCTNAGC	1 cut(s)	591
BlsI	GCNGC	2 cut(s)	202, 419
Bme1390I	CCNGG	2 cut(s)	480, 633
BmeT110I	CYCGRG	1 cut(s)	381
BmgBI	CACGTC	1 cut(s)	461
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	1 cut(s)	332
BmrFI	CCNGG	2 cut(s)	480, 633
BmsI	GCATC	6 cut(s)	238, 283, 294, 303, 415, 593
BpmI	CTGGAG	1 cut(s)	317
Bpu10I	CCTNAGC	1 cut(s)	558
Bpu1102I	GCTNAGC	1 cut(s)	591
BpuEI	CTTGAG	2 cut(s)	215, 636
BsaI	GGTCTC	1 cut(s)	4
BsaJI	CCNNGG	1 cut(s)	607
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse1I	ACTGG	1 cut(s)	343
BseBI	CCWGG	2 cut(s)	480, 633
BseDI	CCNNGG	1 cut(s)	607
BseGI	GGATG	5 cut(s)	117, 253, 274, 430, 608
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	549
BseNI	ACTGG	1 cut(s)	343
BseRI	GAGGAG	1 cut(s)	22
BseXI	GCAGC	2 cut(s)	187, 404
BseYI	CCCAGC	2 cut(s)	239, 317
BshFI	GGCC	1 cut(s)	452
BsiHKAI	GWGCWC	1 cut(s)	382
BsiHKCI	CYCGRG	1 cut(s)	381
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmAI	GTCTC	1 cut(s)	4
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	1 cut(s)	452
Bso31I	GGTCTC	1 cut(s)	4
BsoBI	CYCGRG	1 cut(s)	381
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp143I	GATC	4 cut(s)	33, 82, 90, 492
Bsp1720I	GCTNAGC	1 cut(s)	591
Bsp19I	CCATGG	1 cut(s)	607
BspACI	CCGC	1 cut(s)	292
BspANI	GGCC	1 cut(s)	452
BspCNI	CTCAG	1 cut(s)	550
BspLI	GGNNCC	1 cut(s)	332
BspMAI	CTGCAG	1 cut(s)	422
BspMI	ACCTGC	1 cut(s)	22
BspPI	GGATC	1 cut(s)	77
BspTNI	GGTCTC	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	343
BssECI	CCNNGG	1 cut(s)	607
BssMI	GATC	4 cut(s)	33, 82, 90, 492
BssT1I	CCWWGG	1 cut(s)	607
Bst2UI	CCWGG	2 cut(s)	480, 633
Bst4CI	ACNGT	5 cut(s)	29, 63, 434, 533, 626
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	4 cut(s)	87, 231, 558, 591
BstDSI	CCRYGG	1 cut(s)	607
BstF5I	GGATG	5 cut(s)	117, 253, 274, 430, 608
BstH2I	RGCGCY	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	193
BstKTI	GATC	4 cut(s)	36, 85, 93, 495
BstMAI	GTCTC	1 cut(s)	4
BstMBI	GATC	4 cut(s)	33, 82, 90, 492
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 209, 386, 449
BstNI	CCWGG	2 cut(s)	480, 633
BstNSI	RCATGY	1 cut(s)	378
BstSCI	CCNGG	2 cut(s)	478, 631
BstSFI	CTRYAG	1 cut(s)	418
BstV1I	GCAGC	2 cut(s)	187, 404
BsuRI	GGCC	1 cut(s)	452
BtgI	CCRYGG	1 cut(s)	607
BtrI	CACGTC	1 cut(s)	461
BtsCI	GGATG	5 cut(s)	117, 253, 274, 430, 608
BveI	ACCTGC	1 cut(s)	22
Cac8I	GCNNGC	1 cut(s)	214
CfoI	GCGC	1 cut(s)	193
Cfr13I	GGNCC	1 cut(s)	451
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	6 cut(s)	226, 284, 312, 375, 440, 608
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	4 cut(s)	87, 231, 558, 591
DpnI	GATC	4 cut(s)	35, 84, 92, 494
DpnII	GATC	4 cut(s)	33, 82, 90, 492
Eco130I	CCWWGG	1 cut(s)	607
Eco31I	GGTCTC	1 cut(s)	4
Eco88I	CYCGRG	1 cut(s)	381
EcoO109I	RGGNCCY	1 cut(s)	451
EcoRII	CCWGG	2 cut(s)	478, 631
EcoT14I	CCWWGG	1 cut(s)	607
ErhI	CCWWGG	1 cut(s)	607
FaeI	CATG	6 cut(s)	229, 287, 315, 378, 443, 611
FaiI	YATR	8 cut(s)	102, 227, 285, 313, 376, 441, 600, 609
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	6 cut(s)	225, 283, 311, 374, 439, 607
Fnu4HI	GCNGC	2 cut(s)	201, 418
FokI	GGATG	5 cut(s)	124, 260, 261, 437, 615
Fsp4HI	GCNGC	2 cut(s)	201, 418
FspBI	CTAG	1 cut(s)	368
GlaI	GCGC	1 cut(s)	192
GluI	GCNGC	2 cut(s)	201, 418
GsaI	CCCAGC	2 cut(s)	243, 321
GsuI	CTGGAG	1 cut(s)	317
HaeII	RGCGCY	1 cut(s)	194
HaeIII	GGCC	1 cut(s)	452
HhaI	GCGC	1 cut(s)	193
Hin1II	CATG	6 cut(s)	229, 287, 315, 378, 443, 611
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HindIII	AAGCTT	2 cut(s)	593, 639
HinfI	GANTC	2 cut(s)	264, 516
HphI	GGTGA	1 cut(s)	511
Hpy166II	GTNNAC	1 cut(s)	629
Hpy188I	TCNGA	3 cut(s)	33, 95, 458
Hpy188III	TCNNGA	2 cut(s)	37, 334
Hpy8I	GTNNAC	1 cut(s)	629
Hpy99I	CGWCG	1 cut(s)	462
HpyAV	CCTTC	4 cut(s)	115, 151, 163, 238
HpyCH4III	ACNGT	5 cut(s)	29, 63, 434, 533, 626
HpyCH4IV	ACGT	1 cut(s)	460
HpyCH4V	TGCA	5 cut(s)	216, 274, 420, 443, 464
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 209, 386, 449
HpyF3I	CTNAG	4 cut(s)	87, 231, 558, 591
HpySE526I	ACGT	1 cut(s)	460
Hsp92II	CATG	6 cut(s)	229, 287, 315, 378, 443, 611
HspAI	GCGC	1 cut(s)	191
Kzo9I	GATC	4 cut(s)	33, 82, 90, 492
LmnI	GCTCC	1 cut(s)	336
Lsp1109I	GCAGC	2 cut(s)	187, 404
LweI	GCATC	6 cut(s)	238, 283, 294, 303, 415, 593
MaeI	CTAG	1 cut(s)	368
MaeII	ACGT	1 cut(s)	460
MaeIII	GTNAC	1 cut(s)	57
MalI	GATC	4 cut(s)	35, 84, 92, 494
MboI	GATC	4 cut(s)	33, 82, 90, 492
MboII	GAAGA	3 cut(s)	127, 130, 395
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	1 cut(s)	96
MlyI	GAGTC	1 cut(s)	273
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	8 cut(s)	12, 181, 190, 339, 442, 464, 553, 660
MseI	TTAA	2 cut(s)	528, 585
MspR9I	CCNGG	2 cut(s)	480, 633
MvaI	CCWGG	2 cut(s)	480, 633
MwoI	GCNNNNNNNGC	4 cut(s)	197, 209, 386, 449
NcoI	CCATGG	1 cut(s)	607
NdeII	GATC	4 cut(s)	33, 82, 90, 492
NlaIII	CATG	6 cut(s)	229, 287, 315, 378, 443, 611
NlaIV	GGNNCC	1 cut(s)	332
NmuCI	GTSAC	1 cut(s)	57
NspI	RCATGY	1 cut(s)	378
PaeR7I	CTCGAG	1 cut(s)	381
PciI	ACATGT	1 cut(s)	374
PcsI	WCGNNNNNNNCGW	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	516
PkrI	GCNGC	2 cut(s)	202, 419
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
PscI	ACATGT	1 cut(s)	374
Psp6I	CCWGG	2 cut(s)	478, 631
PspFI	CCCAGC	2 cut(s)	239, 317
PspGI	CCWGG	2 cut(s)	478, 631
PspN4I	GGNNCC	1 cut(s)	332
PspPI	GGNCC	1 cut(s)	451
PspXI	VCTCGAGB	1 cut(s)	381
PsrI	GAACNNNNNNTAC	2 cut(s)	32, 64
PstI	CTGCAG	1 cut(s)	422
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SaqAI	TTAA	2 cut(s)	528, 585
SatI	GCNGC	2 cut(s)	201, 418
Sau3AI	GATC	4 cut(s)	33, 82, 90, 492
Sau96I	GGNCC	1 cut(s)	451
SchI	GAGTC	1 cut(s)	273
ScrFI	CCNGG	2 cut(s)	480, 633
SduI	GDGCHC	1 cut(s)	382
SetI	ASST	8 cut(s)	16, 23, 402, 463, 597, 622, 634, 643
SfaNI	GCATC	6 cut(s)	238, 283, 294, 303, 415, 593
SfcI	CTRYAG	1 cut(s)	418
Sfr274I	CTCGAG	1 cut(s)	381
SlaI	CTCGAG	1 cut(s)	381
SmlI	CTYRAG	3 cut(s)	194, 381, 651
SmoI	CTYRAG	3 cut(s)	194, 381, 651
Sse9I	AATT	1 cut(s)	96
SsiI	CCGC	1 cut(s)	292
SspMI	CTAG	1 cut(s)	368
StyD4I	CCNGG	2 cut(s)	478, 631
StyI	CCWWGG	1 cut(s)	607
TaaI	ACNGT	5 cut(s)	29, 63, 434, 533, 626
TaiI	ACGT	1 cut(s)	463
TaqI	TCGA	2 cut(s)	182, 382
TasI	AATT	1 cut(s)	96
TatI	WGTACW	1 cut(s)	222
TfiI	GAWTC	1 cut(s)	516
Tru1I	TTAA	2 cut(s)	528, 585
Tru9I	TTAA	2 cut(s)	528, 585
TseFI	GTSAC	1 cut(s)	57
TseI	GCWGC	2 cut(s)	200, 417
Tsp45I	GTSAC	1 cut(s)	57
TspDTI	ATGAA	2 cut(s)	128, 300
TspGWI	ACGGA	1 cut(s)	267
XapI	RAATTY	1 cut(s)	96
XceI	RCATGY	1 cut(s)	378
XhoI	CTCGAG	1 cut(s)	381
XspI	CTAG	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.