Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0010215

Physical Location & Seq

Genomic Coordinates Forward (+)

25791264 .. 25792835

Gene Structure 1572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g25500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGTTCCTACGAGCGATCGGACGGCCGTTGTTGGCCAGGGTGAAGCAGACGACGGGGATCGTAGGGCTGGACGTGGTCCCCAATGCGAGGGAGGTCCTAATCGAGCTCTACTCCAAAACCCTAAAGGAGATCCAGGCCGTCCCCGAGGACGAAGGCTACCGCAAGGCCGTCGAGAGCTTCACGCGCCACCGCCTCAATGTCTGCCGCGAAGAGGAGGACTGGGAGGCGATCGAGAAGAAGCTCGGCTGCGGCCAGGTCGAGGAGCTCATCGAGGAAGCGCGCGACGAGCTCACCCTCATCGGCAAGATGATCGAGTGGGATCCATGGGGTGTTCCTGATGATTACGAATGTGAGGTGATCGAGAATGATGCTCCAGTTCCCAAGCATGTTCCTCTGCACAGACCTGGTCCTCTTCCTGAGGAGTTTTACAAAACGCTGGACGGCCTTACTTCAAACCAACCAAAATTGGATGACGCTAAAGTCGCCTCTATTGGGTCGGAAGCAAAGGAATTTGAATTGAAGTCTTTTTTTCTTGTATTCTCCTGTTTATTGTTGGTGACAGTTTCCCTGTTTGCAGGGCTGTATAAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

ETC_C1_NDUFA5

Protein Analysis

198

Amino Acids

22.36

Weight (kDa)

4.82

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52840
fragaria_vesca	FvH4_7g30480
malus_domestica	MD01G1210300.v1.1 MD07G1280400.v1.1
prunus_persica	Prupe.2G302600_v2.0.a1
pyrus_communis	pycom01g22080 pycom07g25500
rosa_chinensis	RchiOBHm_Chr1g0378851
rosa_laevigata	RLG00000026414
rosa_multiflora	Rmu_sc0000556.1_g000040 Rmu_sc0002133.1_g000003 Rmu_sc0013199.1_g000013
rosa_roxburghii	Rroxscaffold_4G00280320
rosa_rugosa	Rorug01G0410500
rosa_samantha	Rh1AG432800 Rh1BG391000 Rh1CG403700 Rh1DG422100
rosa_wichuraiana	Rw0G009120 Rw1G027090 Rw1G037840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	479
AccII	CGCG	4 cut(s)	184, 207, 280, 282
AciI	CCGC	4 cut(s)	160, 190, 205, 249
AclWI	GGATC	4 cut(s)	65, 124, 314, 327
AcoI	YGGCCR	3 cut(s)	23, 33, 250
AcsI	RAATTY	2 cut(s)	509, 587
AfiI	CCNNNNNNNGG	4 cut(s)	87, 211, 259, 492
AgsI	TTSAA	3 cut(s)	453, 515, 520
AjiI	CACGTC	1 cut(s)	73
AjnI	CCWGG	4 cut(s)	35, 132, 252, 403
AluBI	AGCT	5 cut(s)	106, 177, 241, 265, 289
AluI	AGCT	5 cut(s)	106, 177, 241, 265, 289
Alw21I	GWGCWC	3 cut(s)	108, 267, 291
AlwI	GGATC	4 cut(s)	65, 124, 314, 327
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	6 cut(s)	23, 33, 135, 165, 250, 442
ApeKI	GCWGC	1 cut(s)	246
ApoI	RAATTY	2 cut(s)	509, 587
AspLEI	GCGC	3 cut(s)	186, 280, 282
AspS9I	GGNCC	3 cut(s)	76, 94, 407
AsuHPI	GGTGA	4 cut(s)	52, 283, 367, 568
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	3 cut(s)	76, 94, 407
AxyI	CCTNAGG	1 cut(s)	417
BalI	TGGCCA	1 cut(s)	35
BamHI	GGATCC	1 cut(s)	319
BanII	GRGCYC	3 cut(s)	108, 267, 291
Bbv12I	GWGCWC	3 cut(s)	108, 267, 291
BbvI	GCAGC	1 cut(s)	233
BceAI	ACGGC	5 cut(s)	10, 38, 122, 152, 457
BcgI	CGANNNNNNTGC	6 cut(s)	151, 185, 292, 326, 350, 384
BciT130I	CCWGG	4 cut(s)	37, 134, 254, 405
BisI	GCNGC	3 cut(s)	205, 247, 250
BlsI	GCNGC	3 cut(s)	206, 248, 251
Bme1390I	CCNGG	4 cut(s)	37, 134, 254, 405
Bme18I	GGWCC	3 cut(s)	76, 94, 407
BmeT110I	CYCGRG	1 cut(s)	143
BmgBI	CACGTC	1 cut(s)	73
BmgT120I	GGNCC	3 cut(s)	76, 94, 407
BmiI	GGNNCC	2 cut(s)	78, 321
BmrFI	CCNGG	4 cut(s)	37, 134, 254, 405
BmrI	ACTGGG	1 cut(s)	229
BmsI	GCATC	1 cut(s)	358
BmuI	ACTGGG	1 cut(s)	229
BplI	GAGNNNNNCTC	2 cut(s)	95, 127
BpmI	CTGGAG	1 cut(s)	357
BsaJI	CCNNGG	3 cut(s)	36, 144, 323
Bsc4I	CCNNNNNNNGG	4 cut(s)	87, 211, 259, 492
Bse1I	ACTGG	2 cut(s)	224, 374
Bse21I	CCTNAGG	1 cut(s)	417
BseBI	CCWGG	4 cut(s)	37, 134, 254, 405
BseDI	CCNNGG	3 cut(s)	36, 144, 323
BseGI	GGATG	1 cut(s)	475
BseLI	CCNNNNNNNGG	4 cut(s)	87, 211, 259, 492
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	2 cut(s)	224, 374
BsePI	GCGCGC	1 cut(s)	278
BseRI	GAGGAG	3 cut(s)	227, 275, 434
BseX3I	CGGCCG	1 cut(s)	23
BseXI	GCAGC	1 cut(s)	233
BsgI	GTGCAG	1 cut(s)	380
Bsh1236I	CGCG	4 cut(s)	184, 207, 280, 282
Bsh1285I	CGRYCG	3 cut(s)	18, 26, 231
BshFI	GGCC	6 cut(s)	25, 35, 137, 167, 252, 444
BsiEI	CGRYCG	3 cut(s)	18, 26, 231
BsiHKAI	GWGCWC	3 cut(s)	108, 267, 291
BsiHKCI	CYCGRG	1 cut(s)	143
BslFI	GGGAC	2 cut(s)	62, 125
BslI	CCNNNNNNNGG	4 cut(s)	87, 211, 259, 492
BsmFI	GGGAC	2 cut(s)	62, 125
BsnI	GGCC	6 cut(s)	25, 35, 137, 167, 252, 444
BsoBI	CYCGRG	1 cut(s)	143
Bsp1286I	GDGCHC	3 cut(s)	108, 267, 291
Bsp143I	GATC	7 cut(s)	15, 57, 129, 228, 309, 319, 357
Bsp19I	CCATGG	1 cut(s)	323
BspACI	CCGC	4 cut(s)	160, 190, 205, 249
BspANI	GGCC	6 cut(s)	25, 35, 137, 167, 252, 444
BspCNI	CTCAG	1 cut(s)	409
BspFNI	CGCG	4 cut(s)	184, 207, 280, 282
BspLI	GGNNCC	2 cut(s)	78, 321
BspPI	GGATC	4 cut(s)	65, 124, 314, 327
BsrI	ACTGG	2 cut(s)	224, 374
BssECI	CCNNGG	3 cut(s)	36, 144, 323
BssHII	GCGCGC	1 cut(s)	278
BssMI	GATC	7 cut(s)	15, 57, 129, 228, 309, 319, 357
BssT1I	CCWWGG	1 cut(s)	323
Bst2UI	CCWGG	4 cut(s)	37, 134, 254, 405
Bst4CI	ACNGT	1 cut(s)	562
Bst6I	CTCTTC	2 cut(s)	204, 417
BstC8I	GCNNGC	1 cut(s)	280
BstDEI	CTNAG	1 cut(s)	417
BstDSI	CCRYGG	1 cut(s)	323
BstF5I	GGATG	1 cut(s)	475
BstFNI	CGCG	4 cut(s)	184, 207, 280, 282
BstHHI	GCGC	3 cut(s)	186, 280, 282
BstKTI	GATC	7 cut(s)	18, 60, 132, 231, 312, 322, 360
BstMBI	GATC	7 cut(s)	15, 57, 129, 228, 309, 319, 357
BstMCI	CGRYCG	3 cut(s)	18, 26, 231
BstMWI	GCNNNNNNNGC	3 cut(s)	183, 286, 482
BstNI	CCWGG	4 cut(s)	37, 134, 254, 405
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	4 cut(s)	35, 132, 252, 403
BstUI	CGCG	4 cut(s)	184, 207, 280, 282
BstV1I	GCAGC	1 cut(s)	233
BstX2I	RGATCY	2 cut(s)	129, 319
BstYI	RGATCY	2 cut(s)	129, 319
BstZI	CGGCCG	1 cut(s)	23
Bsu36I	CCTNAGG	1 cut(s)	417
BsuRI	GGCC	6 cut(s)	25, 35, 137, 167, 252, 444
BtgI	CCRYGG	1 cut(s)	323
BtrI	CACGTC	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	475
Cac8I	GCNNGC	1 cut(s)	280
CfoI	GCGC	3 cut(s)	186, 280, 282
Cfr13I	GGNCC	3 cut(s)	76, 94, 407
CseI	GACGC	1 cut(s)	482
CsiI	ACCWGGT	1 cut(s)	403
CviAII	CATG	2 cut(s)	324, 386
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	7 cut(s)	17, 59, 131, 230, 311, 321, 359
DpnII	GATC	7 cut(s)	15, 57, 129, 228, 309, 319, 357
DrdI	GACNNNNNNGTC	1 cut(s)	479
DseDI	GACNNNNNNGTC	1 cut(s)	479
EaeI	YGGCCR	3 cut(s)	23, 33, 250
EagI	CGGCCG	1 cut(s)	23
Eam1104I	CTCTTC	2 cut(s)	204, 417
EarI	CTCTTC	2 cut(s)	204, 417
Ecl136II	GAGCTC	3 cut(s)	106, 265, 289
EclXI	CGGCCG	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	323
Eco24I	GRGCYC	3 cut(s)	108, 267, 291
Eco47I	GGWCC	3 cut(s)	76, 94, 407
Eco52I	CGGCCG	1 cut(s)	23
Eco53kI	GAGCTC	3 cut(s)	106, 265, 289
Eco81I	CCTNAGG	1 cut(s)	417
Eco88I	CYCGRG	1 cut(s)	143
EcoICRI	GAGCTC	3 cut(s)	106, 265, 289
EcoO109I	RGGNCCY	1 cut(s)	94
EcoRII	CCWGG	4 cut(s)	35, 132, 252, 403
EcoT14I	CCWWGG	1 cut(s)	323
EcoT38I	GRGCYC	3 cut(s)	108, 267, 291
ErhI	CCWWGG	1 cut(s)	323
FaeI	CATG	2 cut(s)	327, 389
FaiI	YATR	3 cut(s)	325, 387, 585
FaqI	GGGAC	2 cut(s)	62, 125
FatI	CATG	2 cut(s)	323, 385
Fnu4HI	GCNGC	3 cut(s)	205, 247, 250
FokI	GGATG	1 cut(s)	482
FriOI	GRGCYC	3 cut(s)	108, 267, 291
Fsp4HI	GCNGC	3 cut(s)	205, 247, 250
GlaI	GCGC	3 cut(s)	185, 279, 281
GluI	GCNGC	3 cut(s)	205, 247, 250
GsuI	CTGGAG	1 cut(s)	357
HaeIII	GGCC	6 cut(s)	25, 35, 137, 167, 252, 444
HgaI	GACGC	1 cut(s)	482
HhaI	GCGC	3 cut(s)	186, 280, 282
Hin1II	CATG	2 cut(s)	327, 389
Hin6I	GCGC	3 cut(s)	184, 278, 280
HinP1I	GCGC	3 cut(s)	184, 278, 280
HphI	GGTGA	4 cut(s)	52, 283, 367, 568
Hpy188I	TCNGA	2 cut(s)	20, 499
Hpy188III	TCNNGA	5 cut(s)	172, 232, 335, 361, 416
Hpy99I	CGWCG	3 cut(s)	55, 173, 287
HpyAV	CCTTC	1 cut(s)	146
HpyCH4III	ACNGT	1 cut(s)	562
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	2 cut(s)	397, 575
HpyF10VI	GCNNNNNNNGC	3 cut(s)	183, 286, 482
HpyF3I	CTNAG	1 cut(s)	417
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	2 cut(s)	327, 389
HspAI	GCGC	3 cut(s)	184, 278, 280
Kzo9I	GATC	7 cut(s)	15, 57, 129, 228, 309, 319, 357
LmnI	GCTCC	2 cut(s)	262, 376
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	1 cut(s)	358
MabI	ACCWGGT	1 cut(s)	403
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	556
MalI	GATC	7 cut(s)	17, 59, 131, 230, 311, 321, 359
MboI	GATC	7 cut(s)	15, 57, 129, 228, 309, 319, 357
MboII	GAAGA	3 cut(s)	221, 247, 404
MflI	RGATCY	2 cut(s)	129, 319
MhlI	GDGCHC	3 cut(s)	108, 267, 291
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	4 cut(s)	464, 509, 515, 587
MluNI	TGGCCA	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	477
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
MseI	TTAA	1 cut(s)	592
Msp20I	TGGCCA	1 cut(s)	35
MspR9I	CCNGG	4 cut(s)	37, 134, 254, 405
MvaI	CCWGG	4 cut(s)	37, 134, 254, 405
MvnI	CGCG	4 cut(s)	184, 207, 280, 282
MwoI	GCNNNNNNNGC	3 cut(s)	183, 286, 482
NcoI	CCATGG	1 cut(s)	323
NdeII	GATC	7 cut(s)	15, 57, 129, 228, 309, 319, 357
NlaIII	CATG	2 cut(s)	327, 389
NlaIV	GGNNCC	2 cut(s)	78, 321
NmeAIII	GCCGAG	1 cut(s)	222
NmuCI	GTSAC	1 cut(s)	556
NspI	RCATGY	1 cut(s)	389
PauI	GCGCGC	1 cut(s)	278
PflFI	GACNNNGTC	2 cut(s)	74, 405
PkrI	GCNGC	3 cut(s)	206, 248, 251
Ple19I	CGATCG	2 cut(s)	18, 231
PpuMI	RGGWCCY	1 cut(s)	94
Psp124BI	GAGCTC	3 cut(s)	108, 267, 291
Psp5II	RGGWCCY	1 cut(s)	94
Psp6I	CCWGG	4 cut(s)	35, 132, 252, 403
PspGI	CCWGG	4 cut(s)	35, 132, 252, 403
PspN4I	GGNNCC	2 cut(s)	78, 321
PspPI	GGNCC	3 cut(s)	76, 94, 407
PspPPI	RGGWCCY	1 cut(s)	94
PsuI	RGATCY	2 cut(s)	129, 319
PsyI	GACNNNGTC	2 cut(s)	74, 405
PteI	GCGCGC	1 cut(s)	278
PvuI	CGATCG	2 cut(s)	18, 231
SacI	GAGCTC	3 cut(s)	108, 267, 291
SaqAI	TTAA	1 cut(s)	592
SatI	GCNGC	3 cut(s)	205, 247, 250
Sau3AI	GATC	7 cut(s)	15, 57, 129, 228, 309, 319, 357
Sau96I	GGNCC	3 cut(s)	76, 94, 407
ScrFI	CCNGG	4 cut(s)	37, 134, 254, 405
SduI	GDGCHC	3 cut(s)	108, 267, 291
SexAI	ACCWGGT	1 cut(s)	403
SfaNI	GCATC	1 cut(s)	358
SinI	GGWCC	3 cut(s)	76, 94, 407
Sse9I	AATT	4 cut(s)	464, 509, 515, 587
SsiI	CCGC	4 cut(s)	160, 190, 205, 249
SstI	GAGCTC	3 cut(s)	108, 267, 291
StyD4I	CCNGG	4 cut(s)	35, 132, 252, 403
StyI	CCWWGG	1 cut(s)	323
TaaI	ACNGT	1 cut(s)	562
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	7 cut(s)	102, 171, 231, 258, 270, 312, 360
TasI	AATT	4 cut(s)	464, 509, 515, 587
TauI	GCSGC	2 cut(s)	207, 252
Tru1I	TTAA	1 cut(s)	592
Tru9I	TTAA	1 cut(s)	592
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	1 cut(s)	246
Tsp45I	GTSAC	1 cut(s)	556
Tth111I	GACNNNGTC	2 cut(s)	74, 405
VpaK11BI	GGWCC	3 cut(s)	76, 94, 407
XapI	RAATTY	2 cut(s)	509, 587
XceI	RCATGY	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.