Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0010215

Physical Location & Seq

Genomic Coordinates Forward (+)

28984304 .. 28985953

Gene Structure 1650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G302600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTTCCTGCGAGCGATCGGACGGCCATTAATGGCCAAGGTGAAGCAGACGACGGGGATCGTAGGGCTGGACGTGGTCCCCAATGCCAGGGAGGTCCTAATTGAGCTATACTCCAAAACCCTAAAGGAGATCCAGGCCGTTCCCGAGGACGAAGGGTACCGTAAGGCCGTCGAGAGCTTCACACGGCAGCGTCTCAAGGTCTGCCGCGAAGAAGAGGACTGGGAAGCGATCGAGAAGAAGCTTGGCTGTGGCCAGGTCGAGGAGCTCATCGAGGAGGCACGTGACGAGCTCACCCTCATCGGCAAGATGATCGAGTGGGATCCATGGGGTGTTCCTGATGATTATGAATGCGAGGTGATCGAGAATGACGCGCCTGTTCCCAAACATGTTCCTCTGCACCGACCTGGTCCTCTTCCCGAAGAGTTCTACAAGACGCTGGAGGGTCTTACTACAAACCAAGCAAAATTGGATGAGGCTAAAGCCACCTCTATTGGGTCCGAATCAAAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

ETC_C1_NDUFA5

Protein Analysis

171

Amino Acids

19.28

Weight (kDa)

4.78

Isoelectric Point (pI)

51.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52840
fragaria_vesca	FvH4_7g30480
malus_domestica	MD01G1210300.v1.1 MD07G1280400.v1.1
prunus_persica	Prupe.2G302600_v2.0.a1
pyrus_communis	pycom01g22080 pycom07g25500
rosa_chinensis	RchiOBHm_Chr1g0378851
rosa_laevigata	RLG00000026414
rosa_multiflora	Rmu_sc0000556.1_g000040 Rmu_sc0002133.1_g000003 Rmu_sc0013199.1_g000013
rosa_roxburghii	Rroxscaffold_4G00280320
rosa_rugosa	Rorug01G0410500
rosa_samantha	Rh1AG432800 Rh1BG391000 Rh1CG403700 Rh1DG422100
rosa_wichuraiana	Rw0G009120 Rw1G027090 Rw1G037840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	156
AccB1I	GGYRCC	1 cut(s)	156
AccII	CGCG	2 cut(s)	207, 371
AciI	CCGC	1 cut(s)	205
AclWI	GGATC	4 cut(s)	65, 124, 314, 327
AcoI	YGGCCR	3 cut(s)	23, 33, 250
AcvI	CACGTG	1 cut(s)	281
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	3 cut(s)	87, 259, 492
AflIII	ACRYGT	1 cut(s)	385
AjiI	CACGTC	1 cut(s)	73
AjnI	CCWGG	4 cut(s)	86, 132, 252, 403
AluBI	AGCT	5 cut(s)	106, 177, 241, 265, 289
AluI	AGCT	5 cut(s)	106, 177, 241, 265, 289
Alw21I	GWGCWC	2 cut(s)	267, 291
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	4 cut(s)	65, 124, 314, 327
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	5 cut(s)	23, 33, 135, 165, 250
ApeKI	GCWGC	1 cut(s)	187
AseI	ATTAAT	1 cut(s)	29
Asp718I	GGTACC	1 cut(s)	156
AspLEI	GCGC	1 cut(s)	373
AspS9I	GGNCC	4 cut(s)	76, 94, 407, 495
AsuHPI	GGTGA	3 cut(s)	52, 283, 367
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	4 cut(s)	76, 94, 407, 495
BalI	TGGCCA	2 cut(s)	35, 252
BamHI	GGATCC	1 cut(s)	319
BanI	GGYRCC	1 cut(s)	156
BanII	GRGCYC	2 cut(s)	267, 291
BbrPI	CACGTG	1 cut(s)	281
Bbv12I	GWGCWC	2 cut(s)	267, 291
BbvI	GCAGC	1 cut(s)	199
BceAI	ACGGC	4 cut(s)	38, 122, 152, 200
BcgI	CGANNNNNNTGC	2 cut(s)	292, 326
BciT130I	CCWGG	4 cut(s)	88, 134, 254, 405
BcoDI	GTCTC	1 cut(s)	197
BisI	GCNGC	2 cut(s)	188, 205
BlsI	GCNGC	2 cut(s)	189, 206
Bme1390I	CCNGG	4 cut(s)	88, 134, 254, 405
Bme18I	GGWCC	4 cut(s)	76, 94, 407, 495
BmeT110I	CYCGRG	1 cut(s)	143
BmgBI	CACGTC	1 cut(s)	73
BmgT120I	GGNCC	4 cut(s)	76, 94, 407, 495
BmiI	GGNNCC	4 cut(s)	78, 158, 321, 496
BmrFI	CCNGG	4 cut(s)	88, 134, 254, 405
BmrI	ACTGGG	1 cut(s)	229
BmuI	ACTGGG	1 cut(s)	229
BplI	GAGNNNNNCTC	2 cut(s)	95, 127
BpmI	CTGGAG	1 cut(s)	458
BpuEI	CTTGAG	1 cut(s)	179
BsaAI	YACGTR	1 cut(s)	281
BsaJI	CCNNGG	4 cut(s)	36, 87, 144, 323
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 259, 492
Bse1I	ACTGG	1 cut(s)	224
BseBI	CCWGG	4 cut(s)	88, 134, 254, 405
BseDI	CCNNGG	4 cut(s)	36, 87, 144, 323
BseGI	GGATG	1 cut(s)	475
BseLI	CCNNNNNNNGG	3 cut(s)	87, 259, 492
BseNI	ACTGG	1 cut(s)	224
BseRI	GAGGAG	2 cut(s)	275, 287
BseXI	GCAGC	1 cut(s)	199
BsgI	GTGCAG	1 cut(s)	380
Bsh1236I	CGCG	2 cut(s)	207, 371
Bsh1285I	CGRYCG	2 cut(s)	18, 231
BshFI	GGCC	5 cut(s)	25, 35, 137, 167, 252
BshNI	GGYRCC	1 cut(s)	156
BsiEI	CGRYCG	2 cut(s)	18, 231
BsiHKAI	GWGCWC	2 cut(s)	267, 291
BsiHKCI	CYCGRG	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	3 cut(s)	87, 259, 492
BsmAI	GTCTC	1 cut(s)	197
BsmBI	CGTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	62
BsmI	GAATGC	1 cut(s)	353
BsnI	GGCC	5 cut(s)	25, 35, 137, 167, 252
BsoBI	CYCGRG	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	267, 291
Bsp143I	GATC	7 cut(s)	15, 57, 129, 228, 309, 319, 357
Bsp19I	CCATGG	1 cut(s)	323
BspACI	CCGC	1 cut(s)	205
BspANI	GGCC	5 cut(s)	25, 35, 137, 167, 252
BspFNI	CGCG	2 cut(s)	207, 371
BspLI	GGNNCC	4 cut(s)	78, 158, 321, 496
BspPI	GGATC	4 cut(s)	65, 124, 314, 327
BspT107I	GGYRCC	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	224
BssECI	CCNNGG	4 cut(s)	36, 87, 144, 323
BssMI	GATC	7 cut(s)	15, 57, 129, 228, 309, 319, 357
BssT1I	CCWWGG	2 cut(s)	36, 323
Bst2UI	CCWGG	4 cut(s)	88, 134, 254, 405
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	3 cut(s)	207, 414, 417
BstBAI	YACGTR	1 cut(s)	281
BstC8I	GCNNGC	1 cut(s)	12
BstDSI	CCRYGG	1 cut(s)	323
BstF5I	GGATG	1 cut(s)	475
BstFNI	CGCG	2 cut(s)	207, 371
BstHHI	GCGC	1 cut(s)	373
BstKTI	GATC	7 cut(s)	18, 60, 132, 231, 312, 322, 360
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	7 cut(s)	15, 57, 129, 228, 309, 319, 357
BstMCI	CGRYCG	2 cut(s)	18, 231
BstNI	CCWGG	4 cut(s)	88, 134, 254, 405
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	4 cut(s)	86, 132, 252, 403
BstUI	CGCG	2 cut(s)	207, 371
BstV1I	GCAGC	1 cut(s)	199
BstX2I	RGATCY	2 cut(s)	129, 319
BstYI	RGATCY	2 cut(s)	129, 319
BsuRI	GGCC	5 cut(s)	25, 35, 137, 167, 252
BtgI	CCRYGG	1 cut(s)	323
BtrI	CACGTC	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	475
Cac8I	GCNNGC	1 cut(s)	12
CfoI	GCGC	1 cut(s)	373
Cfr13I	GGNCC	4 cut(s)	76, 94, 407, 495
CseI	GACGC	3 cut(s)	179, 377, 442
CsiI	ACCWGGT	1 cut(s)	403
Csp6I	GTAC	1 cut(s)	157
CspCI	CAANNNNNGTGG	2 cut(s)	472, 507
CviAII	CATG	2 cut(s)	324, 386
CviQI	GTAC	1 cut(s)	157
DpnI	GATC	7 cut(s)	17, 59, 131, 230, 311, 321, 359
DpnII	GATC	7 cut(s)	15, 57, 129, 228, 309, 319, 357
EaeI	YGGCCR	3 cut(s)	23, 33, 250
Eam1104I	CTCTTC	3 cut(s)	207, 414, 417
EarI	CTCTTC	3 cut(s)	207, 414, 417
Ecl136II	GAGCTC	2 cut(s)	265, 289
Eco130I	CCWWGG	2 cut(s)	36, 323
Eco24I	GRGCYC	2 cut(s)	267, 291
Eco47I	GGWCC	4 cut(s)	76, 94, 407, 495
Eco53kI	GAGCTC	2 cut(s)	265, 289
Eco72I	CACGTG	1 cut(s)	281
Eco88I	CYCGRG	1 cut(s)	143
EcoICRI	GAGCTC	2 cut(s)	265, 289
EcoO109I	RGGNCCY	1 cut(s)	94
EcoRII	CCWGG	4 cut(s)	86, 132, 252, 403
EcoT14I	CCWWGG	2 cut(s)	36, 323
EcoT38I	GRGCYC	2 cut(s)	267, 291
ErhI	CCWWGG	2 cut(s)	36, 323
Esp3I	CGTCTC	1 cut(s)	197
FaeI	CATG	2 cut(s)	327, 389
FaiI	YATR	4 cut(s)	109, 325, 345, 387
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	2 cut(s)	323, 385
Fnu4HI	GCNGC	2 cut(s)	188, 205
FokI	GGATG	1 cut(s)	482
FriOI	GRGCYC	2 cut(s)	267, 291
Fsp4HI	GCNGC	2 cut(s)	188, 205
GlaI	GCGC	1 cut(s)	372
GluI	GCNGC	2 cut(s)	188, 205
GsuI	CTGGAG	1 cut(s)	458
HaeIII	GGCC	5 cut(s)	25, 35, 137, 167, 252
HgaI	GACGC	3 cut(s)	179, 377, 442
HhaI	GCGC	1 cut(s)	373
Hin1II	CATG	2 cut(s)	327, 389
Hin6I	GCGC	1 cut(s)	371
HinP1I	GCGC	1 cut(s)	371
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	1 cut(s)	500
HphI	GGTGA	3 cut(s)	52, 283, 367
Hpy188I	TCNGA	2 cut(s)	20, 499
Hpy188III	TCNNGA	6 cut(s)	143, 172, 232, 335, 361, 416
Hpy99I	CGWCG	2 cut(s)	55, 173
HpyAV	CCTTC	1 cut(s)	146
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4IV	ACGT	2 cut(s)	72, 280
HpyCH4V	TGCA	1 cut(s)	397
HpySE526I	ACGT	2 cut(s)	72, 280
Hsp92II	CATG	2 cut(s)	327, 389
HspAI	GCGC	1 cut(s)	371
KpnI	GGTACC	1 cut(s)	160
Kzo9I	GATC	7 cut(s)	15, 57, 129, 228, 309, 319, 357
LmnI	GCTCC	1 cut(s)	262
Lsp1109I	GCAGC	1 cut(s)	199
MabI	ACCWGGT	1 cut(s)	403
MaeII	ACGT	2 cut(s)	72, 280
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	7 cut(s)	17, 59, 131, 230, 311, 321, 359
MboI	GATC	7 cut(s)	15, 57, 129, 228, 309, 319, 357
MboII	GAAGA	5 cut(s)	221, 224, 247, 404, 431
MflI	RGATCY	2 cut(s)	129, 319
MhlI	GDGCHC	2 cut(s)	267, 291
MlsI	TGGCCA	2 cut(s)	35, 252
MluCI	AATT	2 cut(s)	99, 464
MluNI	TGGCCA	2 cut(s)	35, 252
Mox20I	TGGCCA	2 cut(s)	35, 252
MscI	TGGCCA	2 cut(s)	35, 252
MseI	TTAA	1 cut(s)	29
Msp20I	TGGCCA	2 cut(s)	35, 252
MspR9I	CCNGG	4 cut(s)	88, 134, 254, 405
Mva1269I	GAATGC	1 cut(s)	353
MvaI	CCWGG	4 cut(s)	88, 134, 254, 405
MvnI	CGCG	2 cut(s)	207, 371
NcoI	CCATGG	1 cut(s)	323
NdeII	GATC	7 cut(s)	15, 57, 129, 228, 309, 319, 357
NlaIII	CATG	2 cut(s)	327, 389
NlaIV	GGNNCC	4 cut(s)	78, 158, 321, 496
NmuCI	GTSAC	1 cut(s)	281
NspI	RCATGY	1 cut(s)	389
PciI	ACATGT	1 cut(s)	385
PctI	GAATGC	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	500
PflFI	GACNNNGTC	2 cut(s)	74, 405
PkrI	GCNGC	2 cut(s)	189, 206
Ple19I	CGATCG	2 cut(s)	18, 231
PmaCI	CACGTG	1 cut(s)	281
PmlI	CACGTG	1 cut(s)	281
Ppu21I	YACGTR	1 cut(s)	281
PpuMI	RGGWCCY	1 cut(s)	94
PscI	ACATGT	1 cut(s)	385
PshBI	ATTAAT	1 cut(s)	29
Psp124BI	GAGCTC	2 cut(s)	267, 291
Psp5II	RGGWCCY	1 cut(s)	94
Psp6I	CCWGG	4 cut(s)	86, 132, 252, 403
PspCI	CACGTG	1 cut(s)	281
PspGI	CCWGG	4 cut(s)	86, 132, 252, 403
PspN4I	GGNNCC	4 cut(s)	78, 158, 321, 496
PspPI	GGNCC	4 cut(s)	76, 94, 407, 495
PspPPI	RGGWCCY	1 cut(s)	94
PsuI	RGATCY	2 cut(s)	129, 319
PsyI	GACNNNGTC	2 cut(s)	74, 405
PvuI	CGATCG	2 cut(s)	18, 231
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SacI	GAGCTC	2 cut(s)	267, 291
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	2 cut(s)	188, 205
Sau3AI	GATC	7 cut(s)	15, 57, 129, 228, 309, 319, 357
Sau96I	GGNCC	4 cut(s)	76, 94, 407, 495
ScrFI	CCNGG	4 cut(s)	88, 134, 254, 405
SduI	GDGCHC	2 cut(s)	267, 291
SexAI	ACCWGGT	1 cut(s)	403
SinI	GGWCC	4 cut(s)	76, 94, 407, 495
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	2 cut(s)	99, 464
SsiI	CCGC	1 cut(s)	205
SstI	GAGCTC	2 cut(s)	267, 291
StyD4I	CCNGG	4 cut(s)	86, 132, 252, 403
StyI	CCWWGG	2 cut(s)	36, 323
TaaI	ACNGT	1 cut(s)	161
TaiI	ACGT	2 cut(s)	75, 283
TaqI	TCGA	6 cut(s)	171, 231, 258, 270, 312, 360
TasI	AATT	2 cut(s)	99, 464
TauI	GCSGC	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	500
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	1 cut(s)	187
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	1 cut(s)	360
Tth111I	GACNNNGTC	2 cut(s)	74, 405
VpaK11BI	GGWCC	4 cut(s)	76, 94, 407, 495
VspI	ATTAAT	1 cut(s)	29
XceI	RCATGY	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.