Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0010215

Physical Location & Seq

Genomic Coordinates Forward (+)

54445320 .. 54446627

Gene Structure 1308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G027090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTTCCTCCGAGCGATCGCACGGCCGCTGATGGCCAGGGTGAAGAAGACGACGGGGATCGCAGGGCTGGACGTGGTCCCCAACGCAAGGGAGGTACTGATCGAGCTCTACTCCAAAACCCTAAAGGAGATCCAGGCCGTCCCCGAGGACGAAGGCTACCGCAAAGCCGTCCAGAGCTTCACTCGGCAGCGCCTCCAGGTCTGCCGCGAAGAGGACTGGGAGGCCATCGAGAAGAGGCTCGGCTGGGGCCAGTGGGATCCATGCGGTGTTCCTGATGATTATGAGTGTGAGGTGATCGAGAATGATGCTCCAGTCCCCAAACACGTGCCCATTCACCGACCTGGTCCTCTTCCTGAGGAGTTTTATAAAACGCTGCAGGGTCTTGGTTCAGACCAAACAAAGTTGGATGACGCTAAGGCCACCTCGATTGACTCTGAATCCAGGCATAAGGGTCTGCTGTTTCTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

ETC_C1_NDUFA5

Protein Analysis

156

Amino Acids

17.75

Weight (kDa)

5.47

Isoelectric Point (pI)

60.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ETC_C1_NDUFA5	PF04716	22 - 84	5.6e-21	ETC complex I subunit conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52840
fragaria_vesca	FvH4_7g30480
malus_domestica	MD01G1210300.v1.1 MD07G1280400.v1.1
prunus_persica	Prupe.2G302600_v2.0.a1
pyrus_communis	pycom01g22080 pycom07g25500
rosa_chinensis	RchiOBHm_Chr1g0378851
rosa_laevigata	RLG00000026414
rosa_multiflora	Rmu_sc0000556.1_g000040 Rmu_sc0002133.1_g000003 Rmu_sc0013199.1_g000013
rosa_roxburghii	Rroxscaffold_4G00280320
rosa_rugosa	Rorug01G0410500
rosa_samantha	Rh1AG432800 Rh1BG391000 Rh1CG403700 Rh1DG422100
rosa_wichuraiana	Rw0G009120 Rw1G027090 Rw1G037840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	366
AccII	CGCG	1 cut(s)	207
AciI	CCGC	4 cut(s)	26, 160, 205, 264
AclWI	GGATC	4 cut(s)	65, 124, 251, 264
AcoI	YGGCCR	2 cut(s)	23, 33
AcvI	CACGTG	1 cut(s)	325
AfaI	GTAC	1 cut(s)	96
AfiI	CCNNNNNNNGG	2 cut(s)	87, 211
AflIII	ACRYGT	1 cut(s)	322
AjiI	CACGTC	1 cut(s)	73
AjnI	CCWGG	5 cut(s)	35, 132, 195, 340, 440
AluBI	AGCT	2 cut(s)	106, 177
AluI	AGCT	2 cut(s)	106, 177
Alw21I	GWGCWC	1 cut(s)	108
AlwI	GGATC	4 cut(s)	65, 124, 251, 264
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	6 cut(s)	23, 33, 135, 222, 247, 417
ApeKI	GCWGC	2 cut(s)	187, 373
AsiSI	GCGATCGC	1 cut(s)	18
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	3 cut(s)	76, 247, 344
AsuHPI	GGTGA	3 cut(s)	52, 304, 326
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	2 cut(s)	76, 344
AxyI	CCTNAGG	1 cut(s)	354
BaeGI	GKGCMC	1 cut(s)	330
BalI	TGGCCA	1 cut(s)	35
BamHI	GGATCC	1 cut(s)	256
BanII	GRGCYC	1 cut(s)	108
BbrPI	CACGTG	1 cut(s)	325
BbsI	GAAGAC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	108
BbvI	GCAGC	2 cut(s)	199, 360
BccI	CCATC	2 cut(s)	25, 233
BceAI	ACGGC	3 cut(s)	38, 122, 152
BcgI	CGANNNNNNTGC	2 cut(s)	287, 321
BciT130I	CCWGG	5 cut(s)	37, 134, 197, 342, 442
BfmI	CTRYAG	1 cut(s)	374
BfoI	RGCGCY	1 cut(s)	193
BisI	GCNGC	4 cut(s)	26, 188, 205, 374
BlsI	GCNGC	4 cut(s)	27, 189, 206, 375
Bme1390I	CCNGG	5 cut(s)	37, 134, 197, 342, 442
Bme18I	GGWCC	2 cut(s)	76, 344
BmeT110I	CYCGRG	1 cut(s)	143
BmgBI	CACGTC	1 cut(s)	73
BmgT120I	GGNCC	3 cut(s)	76, 247, 344
BmiI	GGNNCC	3 cut(s)	78, 248, 258
BmrFI	CCNGG	5 cut(s)	37, 134, 197, 342, 442
BmrI	ACTGGG	1 cut(s)	226
BmsI	GCATC	1 cut(s)	295
BmuI	ACTGGG	1 cut(s)	226
BpiI	GAAGAC	1 cut(s)	53
BplI	GAGNNNNNCTC	4 cut(s)	95, 127, 166, 198
BpmI	CTGGAG	2 cut(s)	179, 294
Bpu10I	CCTNAGC	1 cut(s)	414
BsaAI	YACGTR	1 cut(s)	325
BsaJI	CCNNGG	2 cut(s)	36, 144
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 211
Bse1I	ACTGG	3 cut(s)	221, 250, 311
Bse21I	CCTNAGG	1 cut(s)	354
BseBI	CCWGG	5 cut(s)	37, 134, 197, 342, 442
BseDI	CCNNGG	2 cut(s)	36, 144
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	2 cut(s)	87, 211
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	3 cut(s)	221, 250, 311
BseRI	GAGGAG	1 cut(s)	371
BseSI	GKGCMC	1 cut(s)	330
BseX3I	CGGCCG	1 cut(s)	23
BseXI	GCAGC	2 cut(s)	199, 360
BseYI	CCCAGC	1 cut(s)	243
Bsh1236I	CGCG	1 cut(s)	207
Bsh1285I	CGRYCG	2 cut(s)	18, 26
BshFI	GGCC	6 cut(s)	25, 35, 137, 224, 249, 419
BsiEI	CGRYCG	2 cut(s)	18, 26
BsiHKAI	GWGCWC	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	143
BslFI	GGGAC	3 cut(s)	62, 125, 299
BslI	CCNNNNNNNGG	2 cut(s)	87, 211
BsmFI	GGGAC	3 cut(s)	62, 125, 299
BsnI	GGCC	6 cut(s)	25, 35, 137, 224, 249, 419
BsoBI	CYCGRG	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	108, 330
Bsp143I	GATC	6 cut(s)	15, 57, 99, 129, 256, 294
BspACI	CCGC	4 cut(s)	26, 160, 205, 264
BspANI	GGCC	6 cut(s)	25, 35, 137, 224, 249, 419
BspCNI	CTCAG	1 cut(s)	346
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	3 cut(s)	78, 248, 258
BspMAI	CTGCAG	1 cut(s)	378
BspPI	GGATC	4 cut(s)	65, 124, 251, 264
BsrI	ACTGG	3 cut(s)	221, 250, 311
BssECI	CCNNGG	2 cut(s)	36, 144
BssMI	GATC	6 cut(s)	15, 57, 99, 129, 256, 294
Bst2UI	CCWGG	5 cut(s)	37, 134, 197, 342, 442
Bst6I	CTCTTC	3 cut(s)	204, 227, 354
BstBAI	YACGTR	1 cut(s)	325
BstDEI	CTNAG	2 cut(s)	354, 414
BstF5I	GGATG	1 cut(s)	412
BstFNI	CGCG	1 cut(s)	207
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	6 cut(s)	18, 60, 102, 132, 259, 297
BstMBI	GATC	6 cut(s)	15, 57, 99, 129, 256, 294
BstMCI	CGRYCG	2 cut(s)	18, 26
BstNI	CCWGG	5 cut(s)	37, 134, 197, 342, 442
BstSCI	CCNGG	5 cut(s)	35, 132, 195, 340, 440
BstSFI	CTRYAG	1 cut(s)	374
BstSLI	GKGCMC	1 cut(s)	330
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	199, 360
BstV2I	GAAGAC	1 cut(s)	53
BstX2I	RGATCY	2 cut(s)	129, 256
BstYI	RGATCY	2 cut(s)	129, 256
BstZI	CGGCCG	1 cut(s)	23
Bsu36I	CCTNAGG	1 cut(s)	354
BsuRI	GGCC	6 cut(s)	25, 35, 137, 224, 249, 419
BtrI	CACGTC	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	257
CfoI	GCGC	1 cut(s)	192
Cfr13I	GGNCC	3 cut(s)	76, 247, 344
CseI	GACGC	1 cut(s)	419
CsiI	ACCWGGT	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	95
CspCI	CAANNNNNGTGG	2 cut(s)	409, 444
CviAII	CATG	1 cut(s)	261
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	2 cut(s)	354, 414
DpnI	GATC	6 cut(s)	17, 59, 101, 131, 258, 296
DpnII	GATC	6 cut(s)	15, 57, 99, 129, 256, 294
EaeI	YGGCCR	2 cut(s)	23, 33
EagI	CGGCCG	1 cut(s)	23
Eam1104I	CTCTTC	3 cut(s)	204, 227, 354
EarI	CTCTTC	3 cut(s)	204, 227, 354
Ecl136II	GAGCTC	1 cut(s)	106
EclXI	CGGCCG	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	108
Eco47I	GGWCC	2 cut(s)	76, 344
Eco52I	CGGCCG	1 cut(s)	23
Eco53kI	GAGCTC	1 cut(s)	106
Eco72I	CACGTG	1 cut(s)	325
Eco81I	CCTNAGG	1 cut(s)	354
Eco88I	CYCGRG	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	106
EcoRII	CCWGG	5 cut(s)	35, 132, 195, 340, 440
EcoT38I	GRGCYC	1 cut(s)	108
FaeI	CATG	1 cut(s)	264
FaiI	YATR	4 cut(s)	262, 282, 366, 447
FaqI	GGGAC	3 cut(s)	62, 125, 299
FatI	CATG	1 cut(s)	260
Fnu4HI	GCNGC	4 cut(s)	26, 188, 205, 374
FokI	GGATG	1 cut(s)	419
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	4 cut(s)	26, 188, 205, 374
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	4 cut(s)	26, 188, 205, 374
GsaI	CCCAGC	1 cut(s)	247
GsuI	CTGGAG	2 cut(s)	179, 294
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	6 cut(s)	25, 35, 137, 224, 249, 419
HgaI	GACGC	1 cut(s)	419
HhaI	GCGC	1 cut(s)	192
Hin1II	CATG	1 cut(s)	264
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HinfI	GANTC	2 cut(s)	431, 437
HphI	GGTGA	3 cut(s)	52, 304, 326
Hpy188I	TCNGA	3 cut(s)	11, 391, 436
Hpy188III	TCNNGA	5 cut(s)	172, 229, 272, 298, 353
Hpy99I	CGWCG	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	146
HpyCH4IV	ACGT	2 cut(s)	72, 324
HpyCH4V	TGCA	1 cut(s)	376
HpyF3I	CTNAG	2 cut(s)	354, 414
HpySE526I	ACGT	2 cut(s)	72, 324
Hsp92II	CATG	1 cut(s)	264
HspAI	GCGC	1 cut(s)	190
Kzo9I	GATC	6 cut(s)	15, 57, 99, 129, 256, 294
LmnI	GCTCC	1 cut(s)	313
Lsp1109I	GCAGC	2 cut(s)	199, 360
LweI	GCATC	1 cut(s)	295
MabI	ACCWGGT	1 cut(s)	340
MaeII	ACGT	2 cut(s)	72, 324
MalI	GATC	6 cut(s)	17, 59, 101, 131, 258, 296
MboI	GATC	6 cut(s)	15, 57, 99, 129, 256, 294
MboII	GAAGA	5 cut(s)	55, 58, 221, 244, 341
MflI	RGATCY	2 cut(s)	129, 256
MhlI	GDGCHC	2 cut(s)	108, 330
MlsI	TGGCCA	1 cut(s)	35
MluNI	TGGCCA	1 cut(s)	35
MlyI	GAGTC	1 cut(s)	425
MmeI	TCCRAC	1 cut(s)	384
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
Msp20I	TGGCCA	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	28
MspR9I	CCNGG	5 cut(s)	37, 134, 197, 342, 442
MvaI	CCWGG	5 cut(s)	37, 134, 197, 342, 442
MvnI	CGCG	1 cut(s)	207
NdeII	GATC	6 cut(s)	15, 57, 99, 129, 256, 294
NlaIII	CATG	1 cut(s)	264
NlaIV	GGNNCC	3 cut(s)	78, 248, 258
NmeAIII	GCCGAG	2 cut(s)	163, 219
PfeI	GAWTC	1 cut(s)	437
PflFI	GACNNNGTC	2 cut(s)	74, 342
PkrI	GCNGC	4 cut(s)	27, 189, 206, 375
Ple19I	CGATCG	1 cut(s)	18
PleI	GAGTC	1 cut(s)	425
PmaCI	CACGTG	1 cut(s)	325
PmlI	CACGTG	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	425
Ppu21I	YACGTR	1 cut(s)	325
PsiI	TTATAA	1 cut(s)	366
Psp124BI	GAGCTC	1 cut(s)	108
Psp6I	CCWGG	5 cut(s)	35, 132, 195, 340, 440
PspCI	CACGTG	1 cut(s)	325
PspFI	CCCAGC	1 cut(s)	243
PspGI	CCWGG	5 cut(s)	35, 132, 195, 340, 440
PspN4I	GGNNCC	3 cut(s)	78, 248, 258
PspPI	GGNCC	3 cut(s)	76, 247, 344
PstI	CTGCAG	1 cut(s)	378
PsuI	RGATCY	2 cut(s)	129, 256
PsyI	GACNNNGTC	2 cut(s)	74, 342
PvuI	CGATCG	1 cut(s)	18
RgaI	GCGATCGC	1 cut(s)	18
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
SacI	GAGCTC	1 cut(s)	108
SatI	GCNGC	4 cut(s)	26, 188, 205, 374
Sau3AI	GATC	6 cut(s)	15, 57, 99, 129, 256, 294
Sau96I	GGNCC	3 cut(s)	76, 247, 344
SchI	GAGTC	1 cut(s)	425
ScrFI	CCNGG	5 cut(s)	37, 134, 197, 342, 442
SduI	GDGCHC	2 cut(s)	108, 330
SetI	ASST	9 cut(s)	75, 96, 108, 179, 201, 294, 327, 343, 425
SexAI	ACCWGGT	1 cut(s)	340
SfaAI	GCGATCGC	1 cut(s)	18
SfaNI	GCATC	1 cut(s)	295
SfcI	CTRYAG	1 cut(s)	374
SgfI	GCGATCGC	1 cut(s)	18
SinI	GGWCC	2 cut(s)	76, 344
SsiI	CCGC	4 cut(s)	26, 160, 205, 264
SstI	GAGCTC	1 cut(s)	108
StyD4I	CCNGG	5 cut(s)	35, 132, 195, 340, 440
TaiI	ACGT	2 cut(s)	75, 327
TaqI	TCGA	4 cut(s)	102, 228, 297, 425
TauI	GCSGC	2 cut(s)	28, 207
TfiI	GAWTC	1 cut(s)	437
TscAI	CASTG	1 cut(s)	257
TseI	GCWGC	2 cut(s)	187, 373
TspRI	CASTG	1 cut(s)	257
Tth111I	GACNNNGTC	2 cut(s)	74, 342
VpaK11BI	GGWCC	2 cut(s)	76, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.