Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0010215

Physical Location & Seq

Genomic Coordinates Forward (+)

66980418 .. 66982899

Gene Structure 2482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG403700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTTCCTCCGAGCGATCGCACGGCCGCTGATGGCCAGGGTGAAGCAGACGACGGGGATCGTAGGGCTGGACGTGGTCCCCAACGCAAGGGAGGTACTGATCGAGCTCTACTCCAAAACCCTAAAGGAGATCCAGGCCGTCCCCGAGGACGAAGGCTACCGCAAAGCCGTCGAGAGCTTCACTCGGCAGCGCCTCCAGGTCTGCCGCGAAGAGGAGGACTGGGAGGCCATCGAGAAGAGGCTCGGCTGCGGCCAGGTCGAGGAGCTCATCGAGGAGGCGCGTGACGAGCTCACGCTCATCGGAAAGATGATCGAGTGGGATCCATGGGGTGTTCCTGATGATTACGAGTGTGAGGTGATCGAGAATGATGCTCCAGTCCCCAAACACGTGCCTATTCACCGACCTGGTCCTCTTCCTGAGGAGTTTTACAAAACGCTGCGGGGTCTTGGTTCAGACCAAACAAAGTTGGATGAGGCAAAGGCCACCTCAATTGAATCTGAATCAAAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

ETC_C1_NDUFA5

Protein Analysis

170

Amino Acids

19.36

Weight (kDa)

4.75

Isoelectric Point (pI)

63.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ETC_C1_NDUFA5	PF04716	22 - 88	1.4e-27	ETC complex I subunit conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52840
fragaria_vesca	FvH4_7g30480
malus_domestica	MD01G1210300.v1.1 MD07G1280400.v1.1
prunus_persica	Prupe.2G302600_v2.0.a1
pyrus_communis	pycom01g22080 pycom07g25500
rosa_chinensis	RchiOBHm_Chr1g0378851
rosa_laevigata	RLG00000026414
rosa_multiflora	Rmu_sc0000556.1_g000040 Rmu_sc0002133.1_g000003 Rmu_sc0013199.1_g000013
rosa_roxburghii	Rroxscaffold_4G00280320
rosa_rugosa	Rorug01G0410500
rosa_samantha	Rh1AG432800 Rh1BG391000 Rh1CG403700 Rh1DG422100
rosa_wichuraiana	Rw0G009120 Rw1G027090 Rw1G037840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	207, 280
AciI	CCGC	5 cut(s)	26, 160, 205, 249, 439
AclWI	GGATC	4 cut(s)	65, 124, 314, 327
AcoI	YGGCCR	3 cut(s)	23, 33, 250
AcvI	CACGTG	1 cut(s)	388
AfaI	GTAC	1 cut(s)	96
AfiI	CCNNNNNNNGG	3 cut(s)	87, 211, 259
AflIII	ACRYGT	1 cut(s)	385
AgsI	TTSAA	1 cut(s)	494
AjiI	CACGTC	1 cut(s)	73
AjnI	CCWGG	5 cut(s)	35, 132, 195, 252, 403
AluBI	AGCT	4 cut(s)	106, 177, 265, 289
AluI	AGCT	4 cut(s)	106, 177, 265, 289
Alw21I	GWGCWC	3 cut(s)	108, 267, 291
AlwI	GGATC	4 cut(s)	65, 124, 314, 327
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	6 cut(s)	23, 33, 135, 225, 250, 480
ApeKI	GCWGC	3 cut(s)	187, 246, 436
AsiSI	GCGATCGC	1 cut(s)	18
AspLEI	GCGC	2 cut(s)	192, 280
AspS9I	GGNCC	2 cut(s)	76, 407
AsuHPI	GGTGA	3 cut(s)	52, 367, 389
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	2 cut(s)	76, 407
AxyI	CCTNAGG	1 cut(s)	417
BalI	TGGCCA	1 cut(s)	35
BamHI	GGATCC	1 cut(s)	319
BanII	GRGCYC	3 cut(s)	108, 267, 291
BbrPI	CACGTG	1 cut(s)	388
Bbv12I	GWGCWC	3 cut(s)	108, 267, 291
BbvI	GCAGC	3 cut(s)	199, 233, 423
BccI	CCATC	2 cut(s)	25, 236
BceAI	ACGGC	3 cut(s)	38, 122, 152
BcgI	CGANNNNNNTGC	4 cut(s)	151, 185, 350, 384
BciT130I	CCWGG	5 cut(s)	37, 134, 197, 254, 405
BfoI	RGCGCY	1 cut(s)	193
BisI	GCNGC	6 cut(s)	26, 188, 205, 247, 250, 437
BlsI	GCNGC	6 cut(s)	27, 189, 206, 248, 251, 438
Bme1390I	CCNGG	5 cut(s)	37, 134, 197, 254, 405
Bme18I	GGWCC	2 cut(s)	76, 407
BmeT110I	CYCGRG	1 cut(s)	143
BmgBI	CACGTC	1 cut(s)	73
BmgT120I	GGNCC	2 cut(s)	76, 407
BmiI	GGNNCC	2 cut(s)	78, 321
BmrFI	CCNGG	5 cut(s)	37, 134, 197, 254, 405
BmrI	ACTGGG	1 cut(s)	229
BmsI	GCATC	1 cut(s)	358
BmuI	ACTGGG	1 cut(s)	229
BplI	GAGNNNNNCTC	4 cut(s)	95, 127, 166, 198
BpmI	CTGGAG	2 cut(s)	179, 357
BsaAI	YACGTR	1 cut(s)	388
BsaJI	CCNNGG	3 cut(s)	36, 144, 323
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 211, 259
Bse1I	ACTGG	2 cut(s)	224, 374
Bse21I	CCTNAGG	1 cut(s)	417
BseBI	CCWGG	5 cut(s)	37, 134, 197, 254, 405
BseDI	CCNNGG	3 cut(s)	36, 144, 323
BseGI	GGATG	1 cut(s)	475
BseLI	CCNNNNNNNGG	3 cut(s)	87, 211, 259
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	2 cut(s)	224, 374
BseRI	GAGGAG	4 cut(s)	227, 275, 287, 434
BseX3I	CGGCCG	1 cut(s)	23
BseXI	GCAGC	3 cut(s)	199, 233, 423
Bsh1236I	CGCG	2 cut(s)	207, 280
Bsh1285I	CGRYCG	2 cut(s)	18, 26
BshFI	GGCC	6 cut(s)	25, 35, 137, 227, 252, 482
BsiEI	CGRYCG	2 cut(s)	18, 26
BsiHKAI	GWGCWC	3 cut(s)	108, 267, 291
BsiHKCI	CYCGRG	1 cut(s)	143
BslFI	GGGAC	3 cut(s)	62, 125, 362
BslI	CCNNNNNNNGG	3 cut(s)	87, 211, 259
BsmFI	GGGAC	3 cut(s)	62, 125, 362
BsnI	GGCC	6 cut(s)	25, 35, 137, 227, 252, 482
BsoBI	CYCGRG	1 cut(s)	143
Bsp1286I	GDGCHC	3 cut(s)	108, 267, 291
Bsp143I	GATC	7 cut(s)	15, 57, 99, 129, 309, 319, 357
Bsp19I	CCATGG	1 cut(s)	323
BspACI	CCGC	5 cut(s)	26, 160, 205, 249, 439
BspANI	GGCC	6 cut(s)	25, 35, 137, 227, 252, 482
BspCNI	CTCAG	1 cut(s)	409
BspFNI	CGCG	2 cut(s)	207, 280
BspLI	GGNNCC	2 cut(s)	78, 321
BspPI	GGATC	4 cut(s)	65, 124, 314, 327
BsrI	ACTGG	2 cut(s)	224, 374
BssECI	CCNNGG	3 cut(s)	36, 144, 323
BssMI	GATC	7 cut(s)	15, 57, 99, 129, 309, 319, 357
BssT1I	CCWWGG	1 cut(s)	323
Bst2UI	CCWGG	5 cut(s)	37, 134, 197, 254, 405
Bst6I	CTCTTC	3 cut(s)	204, 230, 417
BstBAI	YACGTR	1 cut(s)	388
BstDEI	CTNAG	1 cut(s)	417
BstDSI	CCRYGG	1 cut(s)	323
BstF5I	GGATG	1 cut(s)	475
BstFNI	CGCG	2 cut(s)	207, 280
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	2 cut(s)	192, 280
BstKTI	GATC	7 cut(s)	18, 60, 102, 132, 312, 322, 360
BstMBI	GATC	7 cut(s)	15, 57, 99, 129, 309, 319, 357
BstMCI	CGRYCG	2 cut(s)	18, 26
BstMWI	GCNNNNNNNGC	1 cut(s)	286
BstNI	CCWGG	5 cut(s)	37, 134, 197, 254, 405
BstSCI	CCNGG	5 cut(s)	35, 132, 195, 252, 403
BstUI	CGCG	2 cut(s)	207, 280
BstV1I	GCAGC	3 cut(s)	199, 233, 423
BstX2I	RGATCY	2 cut(s)	129, 319
BstYI	RGATCY	2 cut(s)	129, 319
BstZI	CGGCCG	1 cut(s)	23
Bsu36I	CCTNAGG	1 cut(s)	417
BsuRI	GGCC	6 cut(s)	25, 35, 137, 227, 252, 482
BtgI	CCRYGG	1 cut(s)	323
BtrI	CACGTC	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	475
CfoI	GCGC	2 cut(s)	192, 280
Cfr13I	GGNCC	2 cut(s)	76, 407
CsiI	ACCWGGT	1 cut(s)	403
Csp6I	GTAC	1 cut(s)	95
CspCI	CAANNNNNGTGG	2 cut(s)	472, 507
CviAII	CATG	1 cut(s)	324
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	7 cut(s)	17, 59, 101, 131, 311, 321, 359
DpnII	GATC	7 cut(s)	15, 57, 99, 129, 309, 319, 357
EaeI	YGGCCR	3 cut(s)	23, 33, 250
EagI	CGGCCG	1 cut(s)	23
Eam1104I	CTCTTC	3 cut(s)	204, 230, 417
EarI	CTCTTC	3 cut(s)	204, 230, 417
Ecl136II	GAGCTC	3 cut(s)	106, 265, 289
EclXI	CGGCCG	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	323
Eco24I	GRGCYC	3 cut(s)	108, 267, 291
Eco47I	GGWCC	2 cut(s)	76, 407
Eco52I	CGGCCG	1 cut(s)	23
Eco53kI	GAGCTC	3 cut(s)	106, 265, 289
Eco72I	CACGTG	1 cut(s)	388
Eco81I	CCTNAGG	1 cut(s)	417
Eco88I	CYCGRG	1 cut(s)	143
EcoICRI	GAGCTC	3 cut(s)	106, 265, 289
EcoRII	CCWGG	5 cut(s)	35, 132, 195, 252, 403
EcoT14I	CCWWGG	1 cut(s)	323
EcoT38I	GRGCYC	3 cut(s)	108, 267, 291
ErhI	CCWWGG	1 cut(s)	323
FaeI	CATG	1 cut(s)	327
FaiI	YATR	2 cut(s)	325, 511
FaqI	GGGAC	3 cut(s)	62, 125, 362
FatI	CATG	1 cut(s)	323
FauI	CCCGC	1 cut(s)	432
Fnu4HI	GCNGC	6 cut(s)	26, 188, 205, 247, 250, 437
FokI	GGATG	1 cut(s)	482
FriOI	GRGCYC	3 cut(s)	108, 267, 291
Fsp4HI	GCNGC	6 cut(s)	26, 188, 205, 247, 250, 437
GlaI	GCGC	2 cut(s)	191, 279
GluI	GCNGC	6 cut(s)	26, 188, 205, 247, 250, 437
GsuI	CTGGAG	2 cut(s)	179, 357
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	6 cut(s)	25, 35, 137, 227, 252, 482
HhaI	GCGC	2 cut(s)	192, 280
Hin1II	CATG	1 cut(s)	327
Hin6I	GCGC	2 cut(s)	190, 278
HinP1I	GCGC	2 cut(s)	190, 278
HinfI	GANTC	2 cut(s)	494, 500
HphI	GGTGA	3 cut(s)	52, 367, 389
Hpy188I	TCNGA	4 cut(s)	11, 302, 454, 499
Hpy188III	TCNNGA	5 cut(s)	172, 232, 335, 361, 416
Hpy99I	CGWCG	2 cut(s)	55, 173
HpyAV	CCTTC	1 cut(s)	146
HpyCH4IV	ACGT	2 cut(s)	72, 387
HpyF10VI	GCNNNNNNNGC	1 cut(s)	286
HpyF3I	CTNAG	1 cut(s)	417
HpySE526I	ACGT	2 cut(s)	72, 387
Hsp92II	CATG	1 cut(s)	327
HspAI	GCGC	2 cut(s)	190, 278
Kzo9I	GATC	7 cut(s)	15, 57, 99, 129, 309, 319, 357
LmnI	GCTCC	2 cut(s)	262, 376
Lsp1109I	GCAGC	3 cut(s)	199, 233, 423
LweI	GCATC	1 cut(s)	358
MabI	ACCWGGT	1 cut(s)	403
MaeII	ACGT	2 cut(s)	72, 387
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	7 cut(s)	17, 59, 101, 131, 311, 321, 359
MboI	GATC	7 cut(s)	15, 57, 99, 129, 309, 319, 357
MboII	GAAGA	3 cut(s)	221, 247, 404
MfeI	CAATTG	1 cut(s)	489
MflI	RGATCY	2 cut(s)	129, 319
MhlI	GDGCHC	3 cut(s)	108, 267, 291
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	1 cut(s)	489
MluNI	TGGCCA	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	447
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
Msp20I	TGGCCA	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	28
MspR9I	CCNGG	5 cut(s)	37, 134, 197, 254, 405
MunI	CAATTG	1 cut(s)	489
MvaI	CCWGG	5 cut(s)	37, 134, 197, 254, 405
MvnI	CGCG	2 cut(s)	207, 280
MwoI	GCNNNNNNNGC	1 cut(s)	286
NcoI	CCATGG	1 cut(s)	323
NdeII	GATC	7 cut(s)	15, 57, 99, 129, 309, 319, 357
NlaIII	CATG	1 cut(s)	327
NlaIV	GGNNCC	2 cut(s)	78, 321
NmeAIII	GCCGAG	2 cut(s)	163, 222
NmuCI	GTSAC	1 cut(s)	281
PfeI	GAWTC	2 cut(s)	494, 500
PflFI	GACNNNGTC	2 cut(s)	74, 405
PkrI	GCNGC	6 cut(s)	27, 189, 206, 248, 251, 438
Ple19I	CGATCG	1 cut(s)	18
PmaCI	CACGTG	1 cut(s)	388
PmlI	CACGTG	1 cut(s)	388
Ppu21I	YACGTR	1 cut(s)	388
Psp124BI	GAGCTC	3 cut(s)	108, 267, 291
Psp6I	CCWGG	5 cut(s)	35, 132, 195, 252, 403
PspCI	CACGTG	1 cut(s)	388
PspGI	CCWGG	5 cut(s)	35, 132, 195, 252, 403
PspN4I	GGNNCC	2 cut(s)	78, 321
PspPI	GGNCC	2 cut(s)	76, 407
PsuI	RGATCY	2 cut(s)	129, 319
PsyI	GACNNNGTC	2 cut(s)	74, 405
PvuI	CGATCG	1 cut(s)	18
RgaI	GCGATCGC	1 cut(s)	18
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
SacI	GAGCTC	3 cut(s)	108, 267, 291
SatI	GCNGC	6 cut(s)	26, 188, 205, 247, 250, 437
Sau3AI	GATC	7 cut(s)	15, 57, 99, 129, 309, 319, 357
Sau96I	GGNCC	2 cut(s)	76, 407
ScrFI	CCNGG	5 cut(s)	37, 134, 197, 254, 405
SduI	GDGCHC	3 cut(s)	108, 267, 291
SexAI	ACCWGGT	1 cut(s)	403
SfaAI	GCGATCGC	1 cut(s)	18
SfaNI	GCATC	1 cut(s)	358
SgfI	GCGATCGC	1 cut(s)	18
SinI	GGWCC	2 cut(s)	76, 407
Sse9I	AATT	1 cut(s)	489
SsiI	CCGC	5 cut(s)	26, 160, 205, 249, 439
SstI	GAGCTC	3 cut(s)	108, 267, 291
StyD4I	CCNGG	5 cut(s)	35, 132, 195, 252, 403
StyI	CCWWGG	1 cut(s)	323
TaiI	ACGT	2 cut(s)	75, 390
TaqI	TCGA	7 cut(s)	102, 171, 231, 258, 270, 312, 360
TasI	AATT	1 cut(s)	489
TauI	GCSGC	3 cut(s)	28, 207, 252
TfiI	GAWTC	2 cut(s)	494, 500
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	3 cut(s)	187, 246, 436
Tsp45I	GTSAC	1 cut(s)	281
Tth111I	GACNNNGTC	2 cut(s)	74, 405
VpaK11BI	GGWCC	2 cut(s)	76, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.