AT5G53070

ribosomal protein L9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015063
Physical Location & Seq
Forward (+)
21518593 .. 21520421
1829 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G53070.1

Sequence Viewer

Length: 666 bp
ATGGCTTATGTTGGGCAAAGTAGAAACGTGATTCGGCATGTAGTCTCGAGAGGAACAGCTTATCACAAGTATGAAAATGCGATTCATCATCCTCTCCTTTTCGCTTGTCAAGGAGTTCGATACAGAAAATTAGAAGTTATTCTTACAACGGGCATTGAGAAGCTTGGCAAAGCTGGTGAGACTGTGAAGGTAGCTCCTGGATACTTCAGGAATCACCTTATGCCAAAACTTCTTGCTGTGCCTAACATTGACAAGTATGCTTATCTCATCCGAGAGCAACGCAAGATGTATAATCATGAAGAAGTAAAGGAGGAGGTTAAGGTGGTTCATAAAACTTCTGAAGTCCAGACAAAAGAGTATGAAAAGGCTGCAAAGCGTCTGGCGAATGCTAATTTGGTATTGAGGAAGTTAGTTGACAAGGAAAAGTTCAAAAACCGCTCCTCAAAAGACGACAAACCTGATGTTCAAACTCCTATCACAAAGGAAGAGATAGTCTCTGAGGTGGCGAGGCAGCTCTGTGTGAAGATTGATCCAGACAATGTGGTTTTAGCGGCGCCTTTGGAAACTTTTGGCGAGTACGAGGTGCCTCTTAAATTCCCCAAGACAATTCCTTTGCCACAAGGAACTGTTCAATGGATTCTCAAAGTCAAAGTCCGTGGCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L9_C Ribosomal_L9_N

Protein Analysis

221

Amino Acids

25.35

Weight (kDa)

9.61

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L9_N PF01281 45 - 81 3e-13 Ribosomal protein L9, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015063)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53070
fragaria_vesca FvH4_7g32000
malus_domestica MD07G1293600.v1.1
prunus_persica Prupe.2G313400_v2.0.a1 Prupe.2G313400_v2.0.a1 Prupe.2G313400_v2.0.a1
pyrus_communis pycom07g26640
rosa_chinensis RchiOBHm_Chr1g0381511
rosa_laevigata RLG00000026226
rosa_roxburghii Rroxscaffold_4G00278600
rosa_rugosa Rorug01G0429100
rosa_samantha Rh1AG452300 Rh1BG409600 Rh1CG424100 Rh1DG440900
rosa_wichuraiana Rw1G039490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 553, 583
AccBSI CCGCTC 1 cut(s) 438
AciI CCGC 2 cut(s) 436, 551
AclWI GGATC 1 cut(s) 524
AcoI YGGCCR 1 cut(s) 658
AcsI RAATTY 1 cut(s) 593
AcuI CTGAAG 2 cut(s) 190, 360
AcyI GRCGYC 1 cut(s) 554
AfaI GTAC 1 cut(s) 578
AgsI TTSAA 3 cut(s) 430, 467, 632
AjnI CCWGG 1 cut(s) 196
AjuI GAANNNNNNNTTGG 2 cut(s) 377, 409
AluBI AGCT 5 cut(s) 59, 163, 173, 194, 514
AluI AGCT 5 cut(s) 59, 163, 173, 194, 514
Alw26I GTCTC 3 cut(s) 49, 173, 499
AlwI GGATC 1 cut(s) 524
Ama87I CYCGRG 1 cut(s) 46
AoxI GGCC 1 cut(s) 658
ApeKI GCWGC 2 cut(s) 368, 511
ApoI RAATTY 1 cut(s) 593
ArsI GACNNNNNNTTYG 3 cut(s) 595, 627, 636
Asp700I GAANNNNTTC 1 cut(s) 138
AspLEI GCGC 1 cut(s) 556
AsuHPI GGTGA 2 cut(s) 188, 206
AvaI CYCGRG 1 cut(s) 46
BalI TGGCCA 1 cut(s) 660
BanI GGYRCC 2 cut(s) 553, 583
BbvI GCAGC 2 cut(s) 355, 523
BciT130I CCWGG 1 cut(s) 198
BciVI GTATCC 1 cut(s) 194
BcoDI GTCTC 3 cut(s) 49, 173, 499
BfoI RGCGCY 1 cut(s) 557
BfuI GTATCC 1 cut(s) 194
BisI GCNGC 3 cut(s) 369, 512, 552
BlsI GCNGC 3 cut(s) 370, 513, 553
Bme1390I CCNGG 1 cut(s) 198
BmeT110I CYCGRG 1 cut(s) 46
BmiI GGNNCC 2 cut(s) 555, 585
BmrFI CCNGG 1 cut(s) 198
BplI GAGNNNNNCTC 2 cut(s) 479, 511
BsaHI GRCGYC 1 cut(s) 554
BsaJI CCNNGG 1 cut(s) 655
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 655
BseGI GGATG 2 cut(s) 88, 267
BseMII CTCAG 1 cut(s) 489
BseRI GAGGAG 2 cut(s) 326, 430
BseXI GCAGC 2 cut(s) 355, 523
BshFI GGCC 1 cut(s) 660
BshNI GGYRCC 2 cut(s) 553, 583
BsiHKCI CYCGRG 1 cut(s) 46
BsmAI GTCTC 3 cut(s) 49, 173, 499
BsmI GAATGC 1 cut(s) 391
BsnI GGCC 1 cut(s) 660
BsoBI CYCGRG 1 cut(s) 46
Bsp143I GATC 1 cut(s) 529
BspACI CCGC 2 cut(s) 436, 551
BspANI GGCC 1 cut(s) 660
BspCNI CTCAG 1 cut(s) 490
BspHI TCATGA 1 cut(s) 295
BspLI GGNNCC 2 cut(s) 555, 585
BspPI GGATC 1 cut(s) 524
BspT107I GGYRCC 2 cut(s) 553, 583
BsrBI CCGCTC 1 cut(s) 438
BssECI CCNNGG 1 cut(s) 655
BssMI GATC 1 cut(s) 529
BssNI GRCGYC 1 cut(s) 554
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 2 cut(s) 184, 628
Bst6I CTCTTC 1 cut(s) 480
BstACI GRCGYC 1 cut(s) 554
BstDEI CTNAG 1 cut(s) 498
BstDSI CCRYGG 1 cut(s) 655
BstF5I GGATG 2 cut(s) 88, 267
BstH2I RGCGCY 1 cut(s) 557
BstHHI GCGC 1 cut(s) 556
BstKTI GATC 1 cut(s) 532
BstMAI GTCTC 3 cut(s) 49, 173, 499
BstMBI GATC 1 cut(s) 529
BstNI CCWGG 1 cut(s) 198
BstNSI RCATGY 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 196
BstV1I GCAGC 2 cut(s) 355, 523
BsuI GTATCC 1 cut(s) 194
BsuRI GGCC 1 cut(s) 660
BtgI CCRYGG 1 cut(s) 655
BtsCI GGATG 2 cut(s) 88, 267
CciI TCATGA 1 cut(s) 295
CfoI GCGC 1 cut(s) 556
CseI GACGC 1 cut(s) 365
Csp6I GTAC 1 cut(s) 577
CspCI CAANNNNNGTGG 1 cut(s) 637
CviAII CATG 2 cut(s) 38, 296
CviJI RGCY 8 cut(s) 5, 59, 163, 173, 194, 368, 514, 660
CviKI_1 RGCY 8 cut(s) 5, 59, 163, 173, 194, 368, 514, 660
CviQI GTAC 1 cut(s) 577
DdeI CTNAG 1 cut(s) 498
DinI GGCGCC 1 cut(s) 555
DpnI GATC 1 cut(s) 531
DpnII GATC 1 cut(s) 529
EaeI YGGCCR 1 cut(s) 658
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Eco57I CTGAAG 2 cut(s) 190, 360
Eco88I CYCGRG 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 196
EgeI GGCGCC 1 cut(s) 555
EheI GGCGCC 1 cut(s) 555
FaeI CATG 2 cut(s) 41, 299
FaiI YATR 9 cut(s) 9, 39, 72, 221, 258, 291, 297, 330, 360
FalI AAGNNNNNCTT 2 cut(s) 126, 158
FatI CATG 2 cut(s) 37, 295
Fnu4HI GCNGC 3 cut(s) 369, 512, 552
FokI GGATG 2 cut(s) 75, 254
Fsp4HI GCNGC 3 cut(s) 369, 512, 552
GlaI GCGC 1 cut(s) 555
GluI GCNGC 3 cut(s) 369, 512, 552
HaeII RGCGCY 1 cut(s) 557
HaeIII GGCC 1 cut(s) 660
HgaI GACGC 1 cut(s) 365
HhaI GCGC 1 cut(s) 556
Hin1I GRCGYC 1 cut(s) 554
Hin1II CATG 2 cut(s) 41, 299
Hin6I GCGC 1 cut(s) 554
HinP1I GCGC 1 cut(s) 554
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 4 cut(s) 31, 82, 211, 637
HphI GGTGA 2 cut(s) 188, 206
Hpy166II GTNNAC 1 cut(s) 415
Hpy188I TCNGA 3 cut(s) 272, 340, 499
Hpy188III TCNNGA 6 cut(s) 46, 48, 208, 296, 346, 533
Hpy8I GTNNAC 1 cut(s) 415
HpyAV CCTTC 1 cut(s) 181
HpyCH4III ACNGT 2 cut(s) 184, 628
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 1 cut(s) 371
HpyF3I CTNAG 1 cut(s) 498
HpySE526I ACGT 1 cut(s) 27
Hsp92I GRCGYC 1 cut(s) 554
Hsp92II CATG 2 cut(s) 41, 299
HspAI GCGC 1 cut(s) 554
KasI GGCGCC 1 cut(s) 553
Kzo9I GATC 1 cut(s) 529
LmnI GCTCC 2 cut(s) 199, 443
LpnPI CCDG 8 cut(s) 159, 183, 193, 210, 359, 365, 471, 546
Lsp1109I GCAGC 2 cut(s) 355, 523
MaeII ACGT 1 cut(s) 27
MalI GATC 1 cut(s) 531
MbiI CCGCTC 1 cut(s) 438
MboI GATC 1 cut(s) 529
MboII GAAGA 3 cut(s) 311, 497, 535
MlsI TGGCCA 1 cut(s) 660
MluCI AATT 4 cut(s) 128, 391, 593, 606
MluNI TGGCCA 1 cut(s) 660
Mly113I GGCGCC 1 cut(s) 554
Mox20I TGGCCA 1 cut(s) 660
MroXI GAANNNNTTC 1 cut(s) 138
MscI TGGCCA 1 cut(s) 660
MseI TTAA 3 cut(s) 318, 591, 664
MslI CAYNNNNRTG 1 cut(s) 69
Msp20I TGGCCA 1 cut(s) 660
MspR9I CCNGG 1 cut(s) 198
Mva1269I GAATGC 1 cut(s) 391
MvaI CCWGG 1 cut(s) 198
NarI GGCGCC 1 cut(s) 554
NdeII GATC 1 cut(s) 529
NlaIII CATG 2 cut(s) 41, 299
NlaIV GGNNCC 2 cut(s) 555, 585
NspI RCATGY 1 cut(s) 41
PaeR7I CTCGAG 1 cut(s) 46
PagI TCATGA 1 cut(s) 295
PctI GAATGC 1 cut(s) 391
PdmI GAANNNNTTC 1 cut(s) 138
PfeI GAWTC 4 cut(s) 31, 82, 211, 637
PfoI TCCNGGA 1 cut(s) 196
PkrI GCNGC 3 cut(s) 370, 513, 553
PluTI GGCGCC 1 cut(s) 557
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 2 cut(s) 555, 585
RsaI GTAC 1 cut(s) 578
RsaNI GTAC 1 cut(s) 577
RseI CAYNNNNRTG 1 cut(s) 69
SaqAI TTAA 3 cut(s) 318, 591, 664
SatI GCNGC 3 cut(s) 369, 512, 552
Sau3AI GATC 1 cut(s) 529
ScrFI CCNGG 1 cut(s) 198
SfoI GGCGCC 1 cut(s) 555
Sfr274I CTCGAG 1 cut(s) 46
SlaI CTCGAG 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 46
SmoI CTYRAG 1 cut(s) 46
Sse9I AATT 4 cut(s) 128, 391, 593, 606
SsiI CCGC 2 cut(s) 436, 551
SspDI GGCGCC 1 cut(s) 553
StyD4I CCNGG 1 cut(s) 196
TaaI ACNGT 2 cut(s) 184, 628
TaiI ACGT 1 cut(s) 30
TaqI TCGA 2 cut(s) 47, 118
TasI AATT 4 cut(s) 128, 391, 593, 606
TauI GCSGC 1 cut(s) 554
TfiI GAWTC 4 cut(s) 31, 82, 211, 637
Tru1I TTAA 3 cut(s) 318, 591, 664
Tru9I TTAA 3 cut(s) 318, 591, 664
TseI GCWGC 2 cut(s) 368, 511
TspDTI ATGAA 5 cut(s) 74, 87, 312, 317, 375
TspGWI ACGGA 1 cut(s) 644
XapI RAATTY 1 cut(s) 593
XceI RCATGY 1 cut(s) 41
XhoI CTCGAG 1 cut(s) 46
XmnI GAANNNNTTC 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.