pycom07g26640

50S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0015063
Physical Location & Seq
Reverse (-)
26626545 .. 26627713
1169 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g26640.4

Sequence Viewer

Length: 594 bp
ATGATGAATCCGCTGATATATGCTTCTCAAGGAGTTCGATTCCGACATTTGGAGGTTATCCTAACGACGAGCGTGGACAAGCTCGGTAAAGCCGGTGAGACGGTGAAGGTTGCGCCGGGGTATTTTCGCAACCACTTGATGCCGAAATTGCTTGCTGTCCCAAACATTGACAAGTATGCGTATCTCATCAAAGAGCATCGCAAGAACTCCCTGCTTGAAGTAGAGGAAGAGGTTGAGGAGGTTAAAGTAGTTGCTGCGGTGTCTGAGGAAGCTAAGCAGAAAGCATATCAAAAGGCGGCGAAAATCCTGGATAATGCTCGCCTGGTATTGCGGAGGCCCATCGACCTTAAAAAGTTCCGTGCGCGTGCAACAAAAGAGGACCCTATAGAATTGAAATCCCCCGTGACAACCGAGGATATAGTGGCCGAGGTGGCAAGGCAGCTTTCCGTGCAAATTCTACCCGAAAACGTCCATCTCCCATCTCCTTTGTTAACCGTGGGAGAGTATGAGGTGACACTGCGCCTTCCTAAGTCCATCTCTTTGCCGCCGGGGAAGGTTCAATGGACTCTTAAAGTTAAAATCCGAGCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L9_C Ribosomal_L9_N

Protein Analysis

198

Amino Acids

22.19

Weight (kDa)

9.56

Isoelectric Point (pI)

44.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015063)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53070
fragaria_vesca FvH4_7g32000
malus_domestica MD07G1293600.v1.1
prunus_persica Prupe.2G313400_v2.0.a1 Prupe.2G313400_v2.0.a1 Prupe.2G313400_v2.0.a1
pyrus_communis pycom07g26640
rosa_chinensis RchiOBHm_Chr1g0381511
rosa_laevigata RLG00000026226
rosa_roxburghii Rroxscaffold_4G00278600
rosa_rugosa Rorug01G0429100
rosa_samantha Rh1AG452300 Rh1BG409600 Rh1CG424100 Rh1DG440900
rosa_wichuraiana Rw1G039490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 364
AciI CCGC 5 cut(s) 11, 257, 296, 331, 545
AcoI YGGCCR 1 cut(s) 423
AcsI RAATTY 1 cut(s) 453
AfiI CCNNNNNNNGG 1 cut(s) 49
AgsI TTSAA 3 cut(s) 218, 394, 560
AjnI CCWGG 2 cut(s) 306, 321
AluBI AGCT 4 cut(s) 82, 272, 442, 587
AluI AGCT 4 cut(s) 82, 272, 442, 587
Alw26I GTCTC 1 cut(s) 92
AoxI GGCC 2 cut(s) 335, 423
ApeKI GCWGC 3 cut(s) 254, 439, 587
ApoI RAATTY 1 cut(s) 453
AspLEI GCGC 3 cut(s) 115, 364, 522
AspS9I GGNCC 2 cut(s) 336, 379
AsuC2I CCSGG 2 cut(s) 117, 549
AsuHPI GGTGA 3 cut(s) 107, 115, 523
AvaII GGWCC 1 cut(s) 379
BbvI GCAGC 3 cut(s) 241, 451, 574
BccI CCATC 4 cut(s) 347, 480, 487, 542
BciT130I CCWGG 2 cut(s) 308, 323
BcnI CCSGG 2 cut(s) 117, 549
BcoDI GTCTC 1 cut(s) 92
BfmI CTRYAG 1 cut(s) 384
BglI GCCNNNNNGGC 1 cut(s) 431
BisI GCNGC 5 cut(s) 255, 297, 440, 545, 588
BlpI GCTNAGC 1 cut(s) 273
BlsI GCNGC 5 cut(s) 256, 298, 441, 546, 589
Bme1390I CCNGG 4 cut(s) 117, 308, 323, 549
Bme18I GGWCC 1 cut(s) 379
BmgT120I GGNCC 2 cut(s) 336, 379
BmiI GGNNCC 1 cut(s) 381
BmrFI CCNGG 4 cut(s) 117, 308, 323, 549
BmsI GCATC 2 cut(s) 129, 205
Bpu1102I GCTNAGC 1 cut(s) 273
BpuEI CTTGAG 1 cut(s) 12
BpuMI CCSGG 2 cut(s) 117, 549
BsaJI CCNNGG 5 cut(s) 116, 411, 426, 495, 548
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse118I RCCGGY 1 cut(s) 92
BseBI CCWGG 2 cut(s) 308, 323
BseDI CCNNGG 5 cut(s) 116, 411, 426, 495, 548
BseLI CCNNNNNNNGG 1 cut(s) 49
BseMII CTCAG 1 cut(s) 255
BseRI GAGGAG 1 cut(s) 251
BseXI GCAGC 3 cut(s) 241, 451, 574
Bsh1236I CGCG 1 cut(s) 364
BshFI GGCC 2 cut(s) 337, 425
BsiSI CCGG 3 cut(s) 93, 116, 548
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 49
BsmAI GTCTC 1 cut(s) 92
BsmBI CGTCTC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 2 cut(s) 337, 425
Bsp1720I GCTNAGC 1 cut(s) 273
BspACI CCGC 5 cut(s) 11, 257, 296, 331, 545
BspANI GGCC 2 cut(s) 337, 425
BspCNI CTCAG 1 cut(s) 256
BspFNI CGCG 1 cut(s) 364
BspLI GGNNCC 1 cut(s) 381
BsrFI RCCGGY 1 cut(s) 92
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 5 cut(s) 116, 411, 426, 495, 548
Bst2UI CCWGG 2 cut(s) 308, 323
Bst4CI ACNGT 2 cut(s) 103, 496
Bst6I CTCTTC 1 cut(s) 222
BstC8I GCNNGC 3 cut(s) 153, 319, 366
BstDEI CTNAG 3 cut(s) 264, 273, 528
BstDSI CCRYGG 1 cut(s) 495
BstFNI CGCG 1 cut(s) 364
BstHHI GCGC 3 cut(s) 115, 364, 522
BstMAI GTCTC 1 cut(s) 92
BstMWI GCNNNNNNNGC 3 cut(s) 148, 431, 448
BstNI CCWGG 2 cut(s) 308, 323
BstSCI CCNGG 4 cut(s) 115, 306, 321, 547
BstSFI CTRYAG 1 cut(s) 384
BstUI CGCG 1 cut(s) 364
BstV1I GCAGC 3 cut(s) 241, 451, 574
BsuRI GGCC 2 cut(s) 337, 425
BtgI CCRYGG 1 cut(s) 495
BtgZI GCGATG 1 cut(s) 182
BtsI GCAGTG 1 cut(s) 515
BtsIMutI CAGTG 1 cut(s) 515
Cac8I GCNNGC 3 cut(s) 153, 319, 366
CfoI GCGC 3 cut(s) 115, 364, 522
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 2 cut(s) 336, 379
CviJI RGCY 7 cut(s) 82, 92, 272, 337, 425, 442, 587
CviKI_1 RGCY 7 cut(s) 82, 92, 272, 337, 425, 442, 587
DdeI CTNAG 3 cut(s) 264, 273, 528
EaeI YGGCCR 1 cut(s) 423
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 379
EcoO109I RGGNCCY 1 cut(s) 379
EcoRII CCWGG 2 cut(s) 306, 321
Esp3I CGTCTC 1 cut(s) 92
FaiI YATR 8 cut(s) 19, 21, 177, 286, 386, 419, 507, 592
FaqI GGGAC 1 cut(s) 143
Fnu4HI GCNGC 5 cut(s) 255, 297, 440, 545, 588
Fsp4HI GCNGC 5 cut(s) 255, 297, 440, 545, 588
GlaI GCGC 3 cut(s) 114, 363, 521
GluI GCNGC 5 cut(s) 255, 297, 440, 545, 588
HaeIII GGCC 2 cut(s) 337, 425
HapII CCGG 3 cut(s) 93, 116, 548
HhaI GCGC 3 cut(s) 115, 364, 522
Hin6I GCGC 3 cut(s) 113, 362, 520
HinP1I GCGC 3 cut(s) 113, 362, 520
HincII GTYRAC 1 cut(s) 492
HindII GTYRAC 1 cut(s) 492
HinfI GANTC 3 cut(s) 7, 39, 565
HpaI GTTAAC 1 cut(s) 492
HpaII CCGG 3 cut(s) 93, 116, 548
HphI GGTGA 3 cut(s) 107, 115, 523
Hpy166II GTNNAC 2 cut(s) 76, 492
Hpy188I TCNGA 3 cut(s) 44, 265, 584
Hpy8I GTNNAC 2 cut(s) 76, 492
Hpy99I CGWCG 1 cut(s) 70
HpyAV CCTTC 3 cut(s) 100, 533, 547
HpyCH4III ACNGT 2 cut(s) 103, 496
HpyCH4IV ACGT 1 cut(s) 468
HpyCH4V TGCA 3 cut(s) 368, 451, 590
HpyF10VI GCNNNNNNNGC 3 cut(s) 148, 431, 448
HpyF3I CTNAG 3 cut(s) 264, 273, 528
HpySE526I ACGT 1 cut(s) 468
HspAI GCGC 3 cut(s) 113, 362, 520
KspAI GTTAAC 1 cut(s) 492
LpnPI CCDG 8 cut(s) 106, 129, 224, 293, 308, 320, 335, 561
Lsp1109I GCAGC 3 cut(s) 241, 451, 574
LweI GCATC 2 cut(s) 129, 205
MaeII ACGT 1 cut(s) 468
MaeIII GTNAC 2 cut(s) 403, 511
MboII GAAGA 1 cut(s) 239
MluCI AATT 3 cut(s) 146, 389, 453
MlyI GAGTC 1 cut(s) 559
MmeI TCCRAC 1 cut(s) 67
MseI TTAA 5 cut(s) 243, 348, 491, 570, 576
MspA1I CMGCKG 1 cut(s) 13
MspI CCGG 3 cut(s) 93, 116, 548
MspR9I CCNGG 4 cut(s) 117, 308, 323, 549
MvaI CCWGG 2 cut(s) 308, 323
MvnI CGCG 1 cut(s) 364
MwoI GCNNNNNNNGC 3 cut(s) 148, 431, 448
NciI CCSGG 2 cut(s) 117, 549
NlaIV GGNNCC 1 cut(s) 381
NmeAIII GCCGAG 1 cut(s) 451
NmuCI GTSAC 2 cut(s) 403, 511
PfeI GAWTC 2 cut(s) 7, 39
PfoI TCCNGGA 1 cut(s) 306
PkrI GCNGC 5 cut(s) 256, 298, 441, 546, 589
PleI GAGTC 1 cut(s) 559
PpsI GAGTC 1 cut(s) 559
PpuMI RGGWCCY 1 cut(s) 379
Psp5II RGGWCCY 1 cut(s) 379
Psp6I CCWGG 2 cut(s) 306, 321
PspGI CCWGG 2 cut(s) 306, 321
PspN4I GGNNCC 1 cut(s) 381
PspPI GGNCC 2 cut(s) 336, 379
PspPPI RGGWCCY 1 cut(s) 379
SaqAI TTAA 5 cut(s) 243, 348, 491, 570, 576
SatI GCNGC 5 cut(s) 255, 297, 440, 545, 588
Sau96I GGNCC 2 cut(s) 336, 379
SchI GAGTC 1 cut(s) 559
ScrFI CCNGG 4 cut(s) 117, 308, 323, 549
SfaNI GCATC 2 cut(s) 129, 205
SfcI CTRYAG 1 cut(s) 384
SinI GGWCC 1 cut(s) 379
SmlI CTYRAG 1 cut(s) 27
SmoI CTYRAG 1 cut(s) 27
Sse9I AATT 3 cut(s) 146, 389, 453
SsiI CCGC 5 cut(s) 11, 257, 296, 331, 545
StyD4I CCNGG 4 cut(s) 115, 306, 321, 547
TaaI ACNGT 2 cut(s) 103, 496
TaiI ACGT 1 cut(s) 471
TaqI TCGA 2 cut(s) 37, 342
TasI AATT 3 cut(s) 146, 389, 453
TauI GCSGC 2 cut(s) 299, 547
TfiI GAWTC 2 cut(s) 7, 39
Tru1I TTAA 5 cut(s) 243, 348, 491, 570, 576
Tru9I TTAA 5 cut(s) 243, 348, 491, 570, 576
TscAI CASTG 1 cut(s) 522
TseFI GTSAC 2 cut(s) 403, 511
TseI GCWGC 3 cut(s) 254, 439, 587
Tsp45I GTSAC 2 cut(s) 403, 511
TspDTI ATGAA 1 cut(s) 20
TspGWI ACGGA 2 cut(s) 347, 436
TspRI CASTG 1 cut(s) 522
VpaK11BI GGWCC 1 cut(s) 379
XapI RAATTY 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.