Rorug01G0429100

50S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0015063
Physical Location & Seq
Forward (+)
52800401 .. 52801095
695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0429100.1

Sequence Viewer

Length: 429 bp
ATGTTGGTTTCTACACTGGACTTGCTCACTCAGGCTGCTTCGAATTCTCTCTACGTTTTCTGCTTCTGCAATTTGATCATAGTCATGATCGTCGTGGGCTCCAAACCCGGGTCTTACTTTGATCAAGAAAGTGAACTTCCTCGCTCAAAGGTGACCTACACTATTACAAGTGATAAACAAGTTGATCATGATGCTAATTGTGAGCAGATGGGTATCACCAGTTCATCAGTTGTTATCAGTAGTGAAGTATCAAATGCCAAGAAAGAACTAGCAAGCGATGAAAAAGCCGGCATTGATGAGCAGATTGCTGTCAGTAATGAGTGTGACAATGACGATGAGCTGAGAAGAAGAGCCGAAGAATTTATCGACAAAGTTAACAGGGGATGGAGGGCAGAATTGCTGAGAAACTCACCTTTGATCAAGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L9_C Ribosomal_L9_N

Protein Analysis

142

Amino Acids

15.77

Weight (kDa)

4.64

Isoelectric Point (pI)

40.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015063)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53070
fragaria_vesca FvH4_7g32000
malus_domestica MD07G1293600.v1.1
prunus_persica Prupe.2G313400_v2.0.a1 Prupe.2G313400_v2.0.a1 Prupe.2G313400_v2.0.a1
pyrus_communis pycom07g26640
rosa_chinensis RchiOBHm_Chr1g0381511
rosa_laevigata RLG00000026226
rosa_roxburghii Rroxscaffold_4G00278600
rosa_rugosa Rorug01G0429100
rosa_samantha Rh1AG452300 Rh1BG409600 Rh1CG424100 Rh1DG440900
rosa_wichuraiana Rw1G039490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 43, 359
AfiI CCNNNNNNNGG 1 cut(s) 108
AluBI AGCT 1 cut(s) 340
AluI AGCT 1 cut(s) 340
Ama87I CYCGRG 1 cut(s) 107
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 2 cut(s) 43, 359
AsuC2I CCSGG 2 cut(s) 108, 109
AsuHPI GGTGA 3 cut(s) 163, 208, 402
AsuII TTCGAA 1 cut(s) 41
AvaI CYCGRG 1 cut(s) 107
BanII GRGCYC 1 cut(s) 101
BbvI GCAGC 1 cut(s) 22
BccI CCATC 2 cut(s) 202, 378
BclI TGATCA 4 cut(s) 75, 121, 184, 417
BcnI CCSGG 2 cut(s) 108, 109
BfaI CTAG 1 cut(s) 269
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 2 cut(s) 108, 109
BmeT110I CYCGRG 1 cut(s) 107
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 2 cut(s) 108, 109
BmsI GCATC 1 cut(s) 181
Bpu14I TTCGAA 1 cut(s) 41
BpuMI CCSGG 2 cut(s) 108, 109
BsaBI GATNNNNATC 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 107
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse118I RCCGGY 1 cut(s) 287
Bse1I ACTGG 2 cut(s) 21, 219
Bse8I GATNNNNATC 1 cut(s) 212
BseDI CCNNGG 1 cut(s) 107
BseGI GGATG 1 cut(s) 389
BseJI GATNNNNATC 1 cut(s) 212
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMII CTCAG 3 cut(s) 44, 332, 392
BseNI ACTGG 2 cut(s) 21, 219
BseXI GCAGC 1 cut(s) 22
BsiHKCI CYCGRG 1 cut(s) 107
BsiSI CCGG 2 cut(s) 108, 288
BslI CCNNNNNNNGG 1 cut(s) 108
BsoBI CYCGRG 1 cut(s) 107
Bsp119I TTCGAA 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 101
Bsp143I GATC 5 cut(s) 75, 87, 121, 184, 417
BspCNI CTCAG 3 cut(s) 43, 333, 393
BspHI TCATGA 2 cut(s) 84, 187
BspLI GGNNCC 1 cut(s) 100
BspQI GCTCTTC 1 cut(s) 343
BspT104I TTCGAA 1 cut(s) 41
BsrFI RCCGGY 1 cut(s) 287
BsrI ACTGG 2 cut(s) 21, 219
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 5 cut(s) 75, 87, 121, 184, 417
Bst6I CTCTTC 1 cut(s) 343
BstBI TTCGAA 1 cut(s) 41
BstC8I GCNNGC 2 cut(s) 274, 289
BstDEI CTNAG 3 cut(s) 30, 341, 401
BstEII GGTNACC 1 cut(s) 151
BstF5I GGATG 1 cut(s) 389
BstKTI GATC 5 cut(s) 78, 90, 124, 187, 420
BstMBI GATC 5 cut(s) 75, 87, 121, 184, 417
BstPI GGTNACC 1 cut(s) 151
BstSCI CCNGG 2 cut(s) 106, 107
BstV1I GCAGC 1 cut(s) 22
BtgZI GCGATG 1 cut(s) 291
BtsCI GGATG 1 cut(s) 389
BtsIMutI CAGTG 1 cut(s) 14
Cac8I GCNNGC 2 cut(s) 274, 289
CciI TCATGA 2 cut(s) 84, 187
Cfr10I RCCGGY 1 cut(s) 287
Cfr9I CCCGGG 1 cut(s) 107
CviAII CATG 2 cut(s) 85, 188
CviJI RGCY 5 cut(s) 35, 99, 287, 340, 353
CviKI_1 RGCY 5 cut(s) 35, 99, 287, 340, 353
DdeI CTNAG 3 cut(s) 30, 341, 401
DpnI GATC 5 cut(s) 77, 89, 123, 186, 419
DpnII GATC 5 cut(s) 75, 87, 121, 184, 417
Eam1104I CTCTTC 1 cut(s) 343
EarI CTCTTC 1 cut(s) 343
Eco24I GRGCYC 1 cut(s) 101
Eco88I CYCGRG 1 cut(s) 107
Eco91I GGTNACC 1 cut(s) 151
EcoO65I GGTNACC 1 cut(s) 151
EcoRI GAATTC 1 cut(s) 43
EcoT38I GRGCYC 1 cut(s) 101
FaeI CATG 2 cut(s) 88, 191
FaiI YATR 4 cut(s) 80, 86, 189, 427
FatI CATG 2 cut(s) 84, 187
FbaI TGATCA 4 cut(s) 75, 121, 184, 417
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 1 cut(s) 396
FriOI GRGCYC 1 cut(s) 101
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 1 cut(s) 269
GluI GCNGC 1 cut(s) 36
HapII CCGG 2 cut(s) 108, 288
Hin1II CATG 2 cut(s) 88, 191
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HpaI GTTAAC 1 cut(s) 376
HpaII CCGG 2 cut(s) 108, 288
HphI GGTGA 3 cut(s) 163, 208, 402
Hpy166II GTNNAC 2 cut(s) 134, 376
Hpy188III TCNNGA 3 cut(s) 85, 125, 188
Hpy8I GTNNAC 2 cut(s) 134, 376
Hpy99I CGWCG 1 cut(s) 95
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 1 cut(s) 69
HpyF3I CTNAG 3 cut(s) 30, 341, 401
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 2 cut(s) 88, 191
KroI GCCGGC 1 cut(s) 287
KroNI GCCGGC 1 cut(s) 289
Ksp22I TGATCA 4 cut(s) 75, 121, 184, 417
KspAI GTTAAC 1 cut(s) 376
Kzo9I GATC 5 cut(s) 75, 87, 121, 184, 417
LguI GCTCTTC 1 cut(s) 343
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 6 cut(s) 2, 17, 121, 232, 301, 364
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 1 cut(s) 181
MaeI CTAG 1 cut(s) 269
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 2 cut(s) 151, 323
MalI GATC 5 cut(s) 77, 89, 123, 186, 419
MboI GATC 5 cut(s) 75, 87, 121, 184, 417
MboII GAAGA 3 cut(s) 357, 360, 368
MhlI GDGCHC 1 cut(s) 101
MluCI AATT 5 cut(s) 43, 70, 196, 359, 395
MnlI CCTC 2 cut(s) 150, 381
MroNI GCCGGC 1 cut(s) 287
MseI TTAA 1 cut(s) 375
MslI CAYNNNNRTG 1 cut(s) 83
MspI CCGG 2 cut(s) 108, 288
MspR9I CCNGG 2 cut(s) 108, 109
NaeI GCCGGC 1 cut(s) 289
NciI CCSGG 2 cut(s) 108, 109
NdeII GATC 5 cut(s) 75, 87, 121, 184, 417
NgoMIV GCCGGC 1 cut(s) 287
NlaIII CATG 2 cut(s) 88, 191
NlaIV GGNNCC 1 cut(s) 100
NmuCI GTSAC 2 cut(s) 151, 323
NspV TTCGAA 1 cut(s) 41
PagI TCATGA 2 cut(s) 84, 187
PciSI GCTCTTC 1 cut(s) 343
PdiI GCCGGC 1 cut(s) 289
PkrI GCNGC 1 cut(s) 37
PspEI GGTNACC 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 100
PsrI GAACNNNNNNTAC 2 cut(s) 205, 237
RseI CAYNNNNRTG 1 cut(s) 83
SapI GCTCTTC 1 cut(s) 343
SaqAI TTAA 1 cut(s) 375
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 5 cut(s) 75, 87, 121, 184, 417
ScrFI CCNGG 2 cut(s) 108, 109
SduI GDGCHC 1 cut(s) 101
SetI ASST 5 cut(s) 57, 153, 158, 342, 415
SfaNI GCATC 1 cut(s) 181
SfuI TTCGAA 1 cut(s) 41
SmaI CCCGGG 1 cut(s) 109
SmiMI CAYNNNNRTG 1 cut(s) 83
Sse9I AATT 5 cut(s) 43, 70, 196, 359, 395
SspMI CTAG 1 cut(s) 269
StyD4I CCNGG 2 cut(s) 106, 107
TaiI ACGT 1 cut(s) 57
TaqI TCGA 2 cut(s) 41, 366
TasI AATT 5 cut(s) 43, 70, 196, 359, 395
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 2 cut(s) 151, 323
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 2 cut(s) 151, 323
TspDTI ATGAA 2 cut(s) 213, 294
TspMI CCCGGG 1 cut(s) 107
TspRI CASTG 1 cut(s) 21
XapI RAATTY 2 cut(s) 43, 359
XmaI CCCGGG 1 cut(s) 107
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.