MD07G1293600.v1.1

50S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0015063
Physical Location & Seq
Reverse (-)
35493189 .. 35495117
1929 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1293600.v1.1.491

Sequence Viewer

Length: 678 bp
ATGGCGTATTTGCGAAATGGCAGAAATGTCCTCCGTCAAATCGTTAAAGACACCAATATCCACAGCTCCGGCGGTTCGGATCGGATGATGAATCCGCTGATATATGCTTCTCAAGGAGTTCGATTCCGACATTTGGAGGTTATCCTAACGACGAGCGTGGATAAGCTCGGTAAAGCCGGTGAGACGGTGAAGGTTGCGCCGGGGTATTTTCGCAACCACTTGATGCCGAAATTGCTTGCTGTCCCAAACATTGACAAGTATGCGTATCTCATCAAAGAGCATCGCAAGAACTCCCTGCTTGAAGTAGAGGAAGAGGTTGAGGAGGTTAAAGTAGTTGCTGCGGTGTCTGAGGAAGCTAAGCAGAAAGCATATCAAAAGGCTGCGAAAATCCTGGATAATGCTCGTCTGGTATTGCGGAGGCCCATCGATCTTAAAAAGTTCCGTTCGCGTGCAACAAAAGAGGACCCTATAGAATTGAAATCCCCCGTGACAACCGAGGATATAGTGACCGAGGTGGCAAGGCAGCTTTCCGTGCAAATCCTACCCGAAAACGTCCATCTCCCATCTCCTTTGTTGACTGTGGGAGAGTATGAGGTGACACTGCGCCTTCCTAAGTCCATCCCTTTGCCGCCGGGGAAGGTTCAATGGACTCTTAAAGTTAAAATCCGAGCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L9_C Ribosomal_L9_N

Protein Analysis

226

Amino Acids

25.39

Weight (kDa)

9.74

Isoelectric Point (pI)

48.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L9_N PF01281 46 - 82 6.1e-14 Ribosomal protein L9, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015063)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53070
fragaria_vesca FvH4_7g32000
malus_domestica MD07G1293600.v1.1
prunus_persica Prupe.2G313400_v2.0.a1 Prupe.2G313400_v2.0.a1 Prupe.2G313400_v2.0.a1
pyrus_communis pycom07g26640
rosa_chinensis RchiOBHm_Chr1g0381511
rosa_laevigata RLG00000026226
rosa_roxburghii Rroxscaffold_4G00278600
rosa_rugosa Rorug01G0429100
rosa_samantha Rh1AG452300 Rh1BG409600 Rh1CG424100 Rh1DG440900
rosa_wichuraiana Rw1G039490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 448
AciI CCGC 5 cut(s) 72, 95, 341, 415, 629
AclWI GGATC 1 cut(s) 87
AfiI CCNNNNNNNGG 1 cut(s) 133
AgsI TTSAA 3 cut(s) 302, 478, 644
AjnI CCWGG 1 cut(s) 390
AluBI AGCT 5 cut(s) 66, 166, 356, 526, 671
AluI AGCT 5 cut(s) 66, 166, 356, 526, 671
Alw26I GTCTC 1 cut(s) 176
AlwI GGATC 1 cut(s) 87
AoxI GGCC 1 cut(s) 419
ApeKI GCWGC 4 cut(s) 338, 380, 523, 671
AspLEI GCGC 2 cut(s) 199, 606
AspS9I GGNCC 2 cut(s) 420, 463
AsuC2I CCSGG 2 cut(s) 201, 633
AsuHPI GGTGA 3 cut(s) 191, 199, 607
AvaII GGWCC 1 cut(s) 463
BbvI GCAGC 4 cut(s) 325, 367, 535, 658
BccI CCATC 4 cut(s) 431, 564, 571, 626
BciT130I CCWGG 1 cut(s) 392
BcnI CCSGG 2 cut(s) 201, 633
BcoDI GTCTC 1 cut(s) 176
BfmI CTRYAG 1 cut(s) 468
BisI GCNGC 5 cut(s) 339, 381, 524, 629, 672
BlpI GCTNAGC 1 cut(s) 357
BlsI GCNGC 5 cut(s) 340, 382, 525, 630, 673
Bme1390I CCNGG 3 cut(s) 201, 392, 633
Bme18I GGWCC 1 cut(s) 463
BmgT120I GGNCC 2 cut(s) 420, 463
BmiI GGNNCC 1 cut(s) 465
BmrFI CCNGG 3 cut(s) 201, 392, 633
BmsI GCATC 2 cut(s) 213, 289
Bpu1102I GCTNAGC 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 96
BpuMI CCSGG 2 cut(s) 201, 633
Bsa29I ATCGAT 1 cut(s) 426
BsaJI CCNNGG 4 cut(s) 200, 495, 510, 632
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse118I RCCGGY 1 cut(s) 176
BseBI CCWGG 1 cut(s) 392
BseCI ATCGAT 1 cut(s) 426
BseDI CCNNGG 4 cut(s) 200, 495, 510, 632
BseGI GGATG 2 cut(s) 90, 618
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 339
BseRI GAGGAG 1 cut(s) 335
BseXI GCAGC 4 cut(s) 325, 367, 535, 658
Bsh1236I CGCG 1 cut(s) 448
BshFI GGCC 1 cut(s) 421
BshVI ATCGAT 1 cut(s) 426
BsiSI CCGG 4 cut(s) 69, 177, 200, 632
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 1 cut(s) 176
BsmBI CGTCTC 1 cut(s) 176
BsmFI GGGAC 1 cut(s) 227
BsnI GGCC 1 cut(s) 421
Bsp143I GATC 2 cut(s) 79, 427
Bsp1720I GCTNAGC 1 cut(s) 357
BspACI CCGC 5 cut(s) 72, 95, 341, 415, 629
BspANI GGCC 1 cut(s) 421
BspCNI CTCAG 1 cut(s) 340
BspDI ATCGAT 1 cut(s) 426
BspFNI CGCG 1 cut(s) 448
BspLI GGNNCC 1 cut(s) 465
BspPI GGATC 1 cut(s) 87
BsrFI RCCGGY 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 4 cut(s) 200, 495, 510, 632
BssMI GATC 2 cut(s) 79, 427
Bst2UI CCWGG 1 cut(s) 392
Bst4CI ACNGT 2 cut(s) 187, 580
Bst6I CTCTTC 1 cut(s) 306
BstC8I GCNNGC 2 cut(s) 237, 450
BstDEI CTNAG 3 cut(s) 348, 357, 612
BstF5I GGATG 2 cut(s) 90, 618
BstFNI CGCG 1 cut(s) 448
BstHHI GCGC 2 cut(s) 199, 606
BstKTI GATC 2 cut(s) 82, 430
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 2 cut(s) 79, 427
BstMWI GCNNNNNNNGC 2 cut(s) 232, 532
BstNI CCWGG 1 cut(s) 392
BstSCI CCNGG 3 cut(s) 199, 390, 631
BstSFI CTRYAG 1 cut(s) 468
BstUI CGCG 1 cut(s) 448
BstV1I GCAGC 4 cut(s) 325, 367, 535, 658
Bsu15I ATCGAT 1 cut(s) 426
BsuRI GGCC 1 cut(s) 421
BsuTUI ATCGAT 1 cut(s) 426
BtgZI GCGATG 1 cut(s) 266
BtsCI GGATG 2 cut(s) 90, 618
BtsI GCAGTG 1 cut(s) 599
BtsIMutI CAGTG 1 cut(s) 599
Cac8I GCNNGC 2 cut(s) 237, 450
CfoI GCGC 2 cut(s) 199, 606
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 2 cut(s) 420, 463
ClaI ATCGAT 1 cut(s) 426
CviJI RGCY 8 cut(s) 66, 166, 176, 356, 380, 421, 526, 671
CviKI_1 RGCY 8 cut(s) 66, 166, 176, 356, 380, 421, 526, 671
DdeI CTNAG 3 cut(s) 348, 357, 612
DpnI GATC 2 cut(s) 81, 429
DpnII GATC 2 cut(s) 79, 427
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 463
EcoO109I RGGNCCY 1 cut(s) 463
EcoRII CCWGG 1 cut(s) 390
Esp3I CGTCTC 1 cut(s) 176
FaiI YATR 8 cut(s) 103, 105, 261, 370, 470, 503, 591, 676
FaqI GGGAC 1 cut(s) 227
Fnu4HI GCNGC 5 cut(s) 339, 381, 524, 629, 672
FokI GGATG 2 cut(s) 97, 605
Fsp4HI GCNGC 5 cut(s) 339, 381, 524, 629, 672
GlaI GCGC 2 cut(s) 198, 605
GluI GCNGC 5 cut(s) 339, 381, 524, 629, 672
HaeIII GGCC 1 cut(s) 421
HapII CCGG 4 cut(s) 69, 177, 200, 632
HhaI GCGC 2 cut(s) 199, 606
Hin6I GCGC 2 cut(s) 197, 604
HinP1I GCGC 2 cut(s) 197, 604
HincII GTYRAC 1 cut(s) 576
HindII GTYRAC 1 cut(s) 576
HinfI GANTC 3 cut(s) 91, 123, 649
HpaII CCGG 4 cut(s) 69, 177, 200, 632
HphI GGTGA 3 cut(s) 191, 199, 607
Hpy166II GTNNAC 1 cut(s) 576
Hpy188I TCNGA 5 cut(s) 79, 84, 128, 349, 668
Hpy8I GTNNAC 1 cut(s) 576
Hpy99I CGWCG 1 cut(s) 154
HpyAV CCTTC 3 cut(s) 184, 617, 631
HpyCH4III ACNGT 2 cut(s) 187, 580
HpyCH4IV ACGT 1 cut(s) 552
HpyCH4V TGCA 3 cut(s) 452, 535, 674
HpyF10VI GCNNNNNNNGC 2 cut(s) 232, 532
HpyF3I CTNAG 3 cut(s) 348, 357, 612
HpySE526I ACGT 1 cut(s) 552
HspAI GCGC 2 cut(s) 197, 604
Kzo9I GATC 2 cut(s) 79, 427
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 8 cut(s) 82, 190, 213, 308, 377, 392, 404, 645
Lsp1109I GCAGC 4 cut(s) 325, 367, 535, 658
LweI GCATC 2 cut(s) 213, 289
MaeII ACGT 1 cut(s) 552
MaeIII GTNAC 3 cut(s) 487, 505, 595
MalI GATC 2 cut(s) 81, 429
MboI GATC 2 cut(s) 79, 427
MboII GAAGA 1 cut(s) 323
MluCI AATT 2 cut(s) 230, 473
MlyI GAGTC 1 cut(s) 643
MmeI TCCRAC 1 cut(s) 151
MseI TTAA 5 cut(s) 45, 327, 432, 654, 660
MspA1I CMGCKG 1 cut(s) 97
MspI CCGG 4 cut(s) 69, 177, 200, 632
MspR9I CCNGG 3 cut(s) 201, 392, 633
MvaI CCWGG 1 cut(s) 392
MvnI CGCG 1 cut(s) 448
MwoI GCNNNNNNNGC 2 cut(s) 232, 532
NciI CCSGG 2 cut(s) 201, 633
NdeII GATC 2 cut(s) 79, 427
NlaIV GGNNCC 1 cut(s) 465
NmuCI GTSAC 3 cut(s) 487, 505, 595
PfeI GAWTC 2 cut(s) 91, 123
PfoI TCCNGGA 1 cut(s) 390
PkrI GCNGC 5 cut(s) 340, 382, 525, 630, 673
PleI GAGTC 1 cut(s) 643
PpsI GAGTC 1 cut(s) 643
PpuMI RGGWCCY 1 cut(s) 463
Psp5II RGGWCCY 1 cut(s) 463
Psp6I CCWGG 1 cut(s) 390
PspGI CCWGG 1 cut(s) 390
PspN4I GGNNCC 1 cut(s) 465
PspPI GGNCC 2 cut(s) 420, 463
PspPPI RGGWCCY 1 cut(s) 463
SaqAI TTAA 5 cut(s) 45, 327, 432, 654, 660
SatI GCNGC 5 cut(s) 339, 381, 524, 629, 672
Sau3AI GATC 2 cut(s) 79, 427
Sau96I GGNCC 2 cut(s) 420, 463
SchI GAGTC 1 cut(s) 643
ScrFI CCNGG 3 cut(s) 201, 392, 633
SfaNI GCATC 2 cut(s) 213, 289
SfcI CTRYAG 1 cut(s) 468
SinI GGWCC 1 cut(s) 463
SmlI CTYRAG 1 cut(s) 111
SmoI CTYRAG 1 cut(s) 111
Sse9I AATT 2 cut(s) 230, 473
SsiI CCGC 5 cut(s) 72, 95, 341, 415, 629
StyD4I CCNGG 3 cut(s) 199, 390, 631
TaaI ACNGT 2 cut(s) 187, 580
TaiI ACGT 1 cut(s) 555
TaqI TCGA 2 cut(s) 121, 426
TaqII GACCGA 1 cut(s) 524
TasI AATT 2 cut(s) 230, 473
TauI GCSGC 1 cut(s) 631
TfiI GAWTC 2 cut(s) 91, 123
Tru1I TTAA 5 cut(s) 45, 327, 432, 654, 660
Tru9I TTAA 5 cut(s) 45, 327, 432, 654, 660
TscAI CASTG 1 cut(s) 606
TseFI GTSAC 3 cut(s) 487, 505, 595
TseI GCWGC 4 cut(s) 338, 380, 523, 671
Tsp45I GTSAC 3 cut(s) 487, 505, 595
TspDTI ATGAA 1 cut(s) 104
TspGWI ACGGA 3 cut(s) 23, 431, 520
TspRI CASTG 1 cut(s) 606
VpaK11BI GGWCC 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.