FvH4_7g32000

50S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015063
Physical Location & Seq
Reverse (-)
23080676 .. 23082611
1936 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g32000.t1

Sequence Viewer

Length: 666 bp
ATGGCTTGTATGCGAAATGGCAGAAATGCCCTCCGTCAGATCATCAACAACGTCCATTCTTCCGAGTCGGAGCGCATGATGAATCCGCTGGTCTTCGCTTGCCAAGGAGTCCGGCATAGAAAATTGGAAGTGATTTTGACGACGAATGTAGATAAGCTCGGCAAGGCCGGTGAGACTGTGAAGGTTGCGCCGGGGCATTTTCGCAACCACTTGATGCCGAAATTGCTTGCTGTACCCAACATTGACAAGTATGCATATCTAATCCGGCAGCAGCGAAAGAATGCGCCGTTGGAAGAGGAGGAGGAGAAGGAGGAGGTTAAAGTGGTTACTGTGTCGGAGGAAGTTAAGATGAAAGAGTATGAAAAGGCAGCAAAGCGTCTGGAGAATGCTCGTCTGGTGTTGCGGAGGGCCATTAATCTTGAAAGGTTCAGGACACGCGCAACAAAGGAGGATCCTATAGAATTGCGATCTGTTGTGACCAAGGAGGATATTGTGGCTGAGGTGGCAAGGCAGCTTTGTATTGGCTTAGAACCTGACAATGTGCATCTACCATCTCCATTGTCAACCGTGGGAGAGTATGAGGTACCACTGCGCCTTCCGAGATCCATCCCTTTGCCTGCAGGGAAGGTTCAGTGGACACTTAATGTTAAAATCCGATGTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L9_C Ribosomal_L9_N

Protein Analysis

222

Amino Acids

25.23

Weight (kDa)

9.49

Isoelectric Point (pI)

55.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L9_N PF01281 43 - 79 6.3e-13 Ribosomal protein L9, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015063)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53070
fragaria_vesca FvH4_7g32000
malus_domestica MD07G1293600.v1.1
prunus_persica Prupe.2G313400_v2.0.a1 Prupe.2G313400_v2.0.a1 Prupe.2G313400_v2.0.a1
pyrus_communis pycom07g26640
rosa_chinensis RchiOBHm_Chr1g0381511
rosa_laevigata RLG00000026226
rosa_roxburghii Rroxscaffold_4G00278600
rosa_rugosa Rorug01G0429100
rosa_samantha Rh1AG452300 Rh1BG409600 Rh1CG424100 Rh1DG440900
rosa_wichuraiana Rw1G039490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 583
AccB1I GGYRCC 1 cut(s) 583
AccII CGCG 1 cut(s) 438
AciI CCGC 2 cut(s) 86, 403
AclWI GGATC 3 cut(s) 446, 459, 597
AfaI GTAC 2 cut(s) 234, 585
AgsI TTSAA 1 cut(s) 422
AjuI GAANNNNNNNTTGG 2 cut(s) 272, 304
AluBI AGCT 2 cut(s) 157, 514
AluI AGCT 2 cut(s) 157, 514
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 3 cut(s) 446, 459, 597
AoxI GGCC 2 cut(s) 165, 408
ApeKI GCWGC 4 cut(s) 268, 271, 368, 511
AseI ATTAAT 1 cut(s) 414
Asp718I GGTACC 1 cut(s) 583
AspLEI GCGC 5 cut(s) 75, 190, 286, 440, 594
AspS9I GGNCC 1 cut(s) 408
AsuC2I CCSGG 1 cut(s) 192
AsuHPI GGTGA 1 cut(s) 182
BamHI GGATCC 1 cut(s) 451
BanI GGYRCC 1 cut(s) 583
BbsI GAAGAC 1 cut(s) 85
BbvCI CCTCAGC 1 cut(s) 498
BbvI GCAGC 4 cut(s) 280, 283, 380, 523
BccI CCATC 2 cut(s) 559, 614
BceAI ACGGC 1 cut(s) 271
BcnI CCSGG 1 cut(s) 192
BcoDI GTCTC 1 cut(s) 167
BfmI CTRYAG 2 cut(s) 456, 618
BisI GCNGC 4 cut(s) 269, 272, 369, 512
BlsI GCNGC 4 cut(s) 270, 273, 370, 513
Bme1390I CCNGG 1 cut(s) 192
BmgT120I GGNCC 1 cut(s) 408
BmiI GGNNCC 2 cut(s) 453, 585
BmrFI CCNGG 1 cut(s) 192
BmsI GCATC 2 cut(s) 204, 553
BpiI GAAGAC 1 cut(s) 85
BpmI CTGGAG 1 cut(s) 401
Bpu10I CCTNAGC 1 cut(s) 498
BpuMI CCSGG 1 cut(s) 192
BsaJI CCNNGG 4 cut(s) 103, 191, 480, 567
Bse118I RCCGGY 1 cut(s) 167
BseDI CCNNGG 4 cut(s) 103, 191, 480, 567
BseGI GGATG 1 cut(s) 606
BseMII CTCAG 1 cut(s) 489
BseRI GAGGAG 4 cut(s) 311, 314, 317, 326
BseXI GCAGC 4 cut(s) 280, 283, 380, 523
Bsh1236I CGCG 1 cut(s) 438
BshFI GGCC 2 cut(s) 167, 410
BshNI GGYRCC 1 cut(s) 583
BsiSI CCGG 4 cut(s) 112, 168, 191, 265
BsmAI GTCTC 1 cut(s) 167
BsmI GAATGC 2 cut(s) 286, 391
BsnI GGCC 2 cut(s) 167, 410
Bsp143I GATC 4 cut(s) 39, 451, 467, 602
BspACI CCGC 2 cut(s) 86, 403
BspANI GGCC 2 cut(s) 167, 410
BspCNI CTCAG 1 cut(s) 490
BspFNI CGCG 1 cut(s) 438
BspLI GGNNCC 2 cut(s) 453, 585
BspMAI CTGCAG 1 cut(s) 622
BspPI GGATC 3 cut(s) 446, 459, 597
BspT107I GGYRCC 1 cut(s) 583
BsrFI RCCGGY 1 cut(s) 167
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 4 cut(s) 103, 191, 480, 567
BssMI GATC 4 cut(s) 39, 451, 467, 602
BssT1I CCWWGG 2 cut(s) 103, 480
Bst4CI ACNGT 3 cut(s) 178, 331, 568
Bst6I CTCTTC 1 cut(s) 288
BstC8I GCNNGC 3 cut(s) 100, 228, 618
BstDEI CTNAG 2 cut(s) 498, 526
BstDSI CCRYGG 1 cut(s) 567
BstF5I GGATG 1 cut(s) 606
BstFNI CGCG 1 cut(s) 438
BstHHI GCGC 5 cut(s) 75, 190, 286, 440, 594
BstKTI GATC 4 cut(s) 42, 454, 470, 605
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 4 cut(s) 39, 451, 467, 602
BstMWI GCNNNNNNNGC 2 cut(s) 223, 503
BstSCI CCNGG 1 cut(s) 190
BstSFI CTRYAG 2 cut(s) 456, 618
BstUI CGCG 1 cut(s) 438
BstV1I GCAGC 4 cut(s) 280, 283, 380, 523
BstV2I GAAGAC 1 cut(s) 85
BstX2I RGATCY 2 cut(s) 451, 602
BstYI RGATCY 2 cut(s) 451, 602
BsuRI GGCC 2 cut(s) 167, 410
BtgI CCRYGG 1 cut(s) 567
BtsCI GGATG 1 cut(s) 606
BtsI GCAGTG 1 cut(s) 587
BtsIMutI CAGTG 2 cut(s) 587, 638
Cac8I GCNNGC 3 cut(s) 100, 228, 618
CfoI GCGC 5 cut(s) 75, 190, 286, 440, 594
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 1 cut(s) 408
CseI GACGC 1 cut(s) 365
Csp6I GTAC 2 cut(s) 233, 584
CviAII CATG 1 cut(s) 76
CviJI RGCY 7 cut(s) 5, 157, 167, 410, 497, 514, 525
CviKI_1 RGCY 7 cut(s) 5, 157, 167, 410, 497, 514, 525
CviQI GTAC 2 cut(s) 233, 584
DdeI CTNAG 2 cut(s) 498, 526
DpnI GATC 4 cut(s) 41, 453, 469, 604
DpnII GATC 4 cut(s) 39, 451, 467, 602
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco130I CCWWGG 2 cut(s) 103, 480
EcoT14I CCWWGG 2 cut(s) 103, 480
EcoT22I ATGCAT 1 cut(s) 256
ErhI CCWWGG 2 cut(s) 103, 480
FaeI CATG 1 cut(s) 79
FaiI YATR 9 cut(s) 11, 77, 117, 252, 256, 360, 458, 579, 664
FatI CATG 1 cut(s) 75
Fnu4HI GCNGC 4 cut(s) 269, 272, 369, 512
FokI GGATG 1 cut(s) 593
Fsp4HI GCNGC 4 cut(s) 269, 272, 369, 512
GlaI GCGC 5 cut(s) 74, 189, 285, 439, 593
GluI GCNGC 4 cut(s) 269, 272, 369, 512
GsuI CTGGAG 1 cut(s) 401
HaeIII GGCC 2 cut(s) 167, 410
HapII CCGG 4 cut(s) 112, 168, 191, 265
HgaI GACGC 1 cut(s) 365
HhaI GCGC 5 cut(s) 75, 190, 286, 440, 594
Hin1II CATG 1 cut(s) 79
Hin6I GCGC 5 cut(s) 73, 188, 284, 438, 592
HinP1I GCGC 5 cut(s) 73, 188, 284, 438, 592
HincII GTYRAC 1 cut(s) 564
HindII GTYRAC 1 cut(s) 564
HinfI GANTC 3 cut(s) 65, 82, 108
HpaII CCGG 4 cut(s) 112, 168, 191, 265
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 2 cut(s) 564, 636
Hpy188I TCNGA 6 cut(s) 39, 64, 70, 337, 600, 656
Hpy188III TCNNGA 3 cut(s) 380, 419, 430
Hpy8I GTNNAC 2 cut(s) 564, 636
Hpy99I CGWCG 1 cut(s) 145
HpyAV CCTTC 4 cut(s) 175, 301, 605, 619
HpyCH4III ACNGT 3 cut(s) 178, 331, 568
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 4 cut(s) 254, 544, 620, 662
HpyF10VI GCNNNNNNNGC 2 cut(s) 223, 503
HpyF3I CTNAG 2 cut(s) 498, 526
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 1 cut(s) 79
HspAI GCGC 5 cut(s) 73, 188, 284, 438, 592
KpnI GGTACC 1 cut(s) 587
Kzo9I GATC 4 cut(s) 39, 451, 467, 602
LmnI GCTCC 1 cut(s) 70
Lsp1109I GCAGC 4 cut(s) 280, 283, 380, 523
LweI GCATC 2 cut(s) 204, 553
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 325, 475
MalI GATC 4 cut(s) 41, 453, 469, 604
MboI GATC 4 cut(s) 39, 451, 467, 602
MboII GAAGA 3 cut(s) 51, 85, 305
MflI RGATCY 2 cut(s) 451, 602
MluCI AATT 3 cut(s) 122, 221, 461
MlyI GAGTC 2 cut(s) 74, 117
MmeI TCCRAC 3 cut(s) 48, 270, 315
Mph1103I ATGCAT 1 cut(s) 256
MseI TTAA 5 cut(s) 318, 345, 414, 642, 648
MspA1I CMGCKG 1 cut(s) 88
MspI CCGG 4 cut(s) 112, 168, 191, 265
MspR9I CCNGG 1 cut(s) 192
Mva1269I GAATGC 2 cut(s) 286, 391
MvnI CGCG 1 cut(s) 438
MwoI GCNNNNNNNGC 2 cut(s) 223, 503
NciI CCSGG 1 cut(s) 192
NdeII GATC 4 cut(s) 39, 451, 467, 602
NlaIII CATG 1 cut(s) 79
NlaIV GGNNCC 2 cut(s) 453, 585
NmeAIII GCCGAG 1 cut(s) 138
NmuCI GTSAC 1 cut(s) 475
NsiI ATGCAT 1 cut(s) 256
PctI GAATGC 2 cut(s) 286, 391
PfeI GAWTC 1 cut(s) 82
PkrI GCNGC 4 cut(s) 270, 273, 370, 513
PleI GAGTC 2 cut(s) 73, 116
PpsI GAGTC 2 cut(s) 73, 116
PshBI ATTAAT 1 cut(s) 414
PspN4I GGNNCC 2 cut(s) 453, 585
PspPI GGNCC 1 cut(s) 408
PstI CTGCAG 1 cut(s) 622
PsuI RGATCY 2 cut(s) 451, 602
RsaI GTAC 2 cut(s) 234, 585
RsaNI GTAC 2 cut(s) 233, 584
SaqAI TTAA 5 cut(s) 318, 345, 414, 642, 648
SatI GCNGC 4 cut(s) 269, 272, 369, 512
Sau3AI GATC 4 cut(s) 39, 451, 467, 602
Sau96I GGNCC 1 cut(s) 408
SbfI CCTGCAGG 1 cut(s) 622
SchI GAGTC 2 cut(s) 74, 117
ScrFI CCNGG 1 cut(s) 192
SdaI CCTGCAGG 1 cut(s) 622
SfaNI GCATC 2 cut(s) 204, 553
SfcI CTRYAG 2 cut(s) 456, 618
Sse8387I CCTGCAGG 1 cut(s) 622
Sse9I AATT 3 cut(s) 122, 221, 461
SsiI CCGC 2 cut(s) 86, 403
StyD4I CCNGG 1 cut(s) 190
StyI CCWWGG 2 cut(s) 103, 480
TaaI ACNGT 3 cut(s) 178, 331, 568
TaiI ACGT 1 cut(s) 54
TasI AATT 3 cut(s) 122, 221, 461
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 5 cut(s) 318, 345, 414, 642, 648
Tru9I TTAA 5 cut(s) 318, 345, 414, 642, 648
TscAI CASTG 2 cut(s) 594, 638
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 4 cut(s) 268, 271, 368, 511
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 3 cut(s) 95, 365, 375
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 2 cut(s) 594, 638
VspI ATTAAT 1 cut(s) 414
Zsp2I ATGCAT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.