Prupe.2G313400_v2.0.a1

50S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0015063
Physical Location & Seq
Reverse (-)
29534012 .. 29536121
2110 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G313400.2

Sequence Viewer

Length: 672 bp
ATGGCTGGCTTAAGAAATGGCAGAAATGTCATCCGTCAAATCATTAAAGACACCAACATCCATAGCTCCGACTCGGATCGCATGATAAATCCTCTGCTCTATGCTTGTCAAGGAGTTAGGTACAGAAAGTTGGAGGTCATTCTAACAACGAGCGTAGAAAAGCTTGGCAAAGCTGGCCAGACAGTGAAGGTTGCGCCCGGACATTTTCGCAACCATTTGATGCCCAAGTTGCTTGCTGTCCCAAACATTGATAAGTATGCCTATCTCATCAAACAGCAGCGGAAGAATTGCCTGCTTCAAGAAGAAGAGGAAGAGGAGGAGGTTAAAGTAGTTACTGTGTCTGAGGAAGCTAAGCAGAGGGAATATCAGAAGGCAGCAAAAATTCTGGACAATGCTCGTCTGGTACTGAGGAGGTCTATCAATCTTGAAAAGTTCCGTACACGTGCAACGAAAGAAGACGCTATAGAATTGAAATCCCCTGTGACAACGGAAGATCTTGTGGCTGAGGTGGCAAGGCAGCTTTGTGTGCACATTCTACCCGAAAACGTGCATCTCCCATCTCCTTTGTTAACTGTGGGAGAGTATGAGGTGCCTTTGCGTCTTCCGAAGTCCATCCCTTTGCCGGCGGGGAAGATTCAATGGACTCTTAATGTTAAAATCCGTACTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L9_C Ribosomal_L9_N

Protein Analysis

224

Amino Acids

25.37

Weight (kDa)

9.47

Isoelectric Point (pI)

59.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015063)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53070
fragaria_vesca FvH4_7g32000
malus_domestica MD07G1293600.v1.1
prunus_persica Prupe.2G313400_v2.0.a1 Prupe.2G313400_v2.0.a1 Prupe.2G313400_v2.0.a1
pyrus_communis pycom07g26640
rosa_chinensis RchiOBHm_Chr1g0381511
rosa_laevigata RLG00000026226
rosa_roxburghii Rroxscaffold_4G00278600
rosa_rugosa Rorug01G0429100
rosa_samantha Rh1AG452300 Rh1BG409600 Rh1CG424100 Rh1DG440900
rosa_wichuraiana Rw1G039490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 589
AciI CCGC 2 cut(s) 280, 626
AclWI GGATC 1 cut(s) 84
AcoI YGGCCR 1 cut(s) 175
AcsI RAATTY 1 cut(s) 381
AcvI CACGTG 1 cut(s) 443
AfaI GTAC 4 cut(s) 122, 405, 439, 664
AfiI CCNNNNNNNGG 1 cut(s) 622
AflII CTTAAG 1 cut(s) 10
AflIII ACRYGT 1 cut(s) 440
AgsI TTSAA 4 cut(s) 299, 428, 472, 638
AluBI AGCT 5 cut(s) 66, 163, 173, 350, 520
AluI AGCT 5 cut(s) 66, 163, 173, 350, 520
Alw21I GWGCWC 1 cut(s) 531
Alw44I GTGCAC 1 cut(s) 527
AlwI GGATC 1 cut(s) 84
AoxI GGCC 1 cut(s) 175
ApaLI GTGCAC 1 cut(s) 527
ApeKI GCWGC 3 cut(s) 277, 374, 517
ApoI RAATTY 1 cut(s) 381
AspLEI GCGC 1 cut(s) 196
AsuC2I CCSGG 1 cut(s) 198
BaeGI GKGCMC 1 cut(s) 531
BalI TGGCCA 1 cut(s) 177
BanI GGYRCC 1 cut(s) 589
BbrPI CACGTG 1 cut(s) 443
BbsI GAAGAC 2 cut(s) 462, 593
Bbv12I GWGCWC 1 cut(s) 531
BbvCI CCTCAGC 1 cut(s) 504
BbvI GCAGC 3 cut(s) 289, 386, 529
BccI CCATC 2 cut(s) 565, 620
BcnI CCSGG 1 cut(s) 198
BfmI CTRYAG 1 cut(s) 462
BfrI CTTAAG 1 cut(s) 10
BglII AGATCT 1 cut(s) 493
BisI GCNGC 3 cut(s) 278, 375, 518
BlpI GCTNAGC 1 cut(s) 351
BlsI GCNGC 3 cut(s) 279, 376, 519
Bme1390I CCNGG 1 cut(s) 198
BmiI GGNNCC 1 cut(s) 591
BmrFI CCNGG 1 cut(s) 198
BmsI GCATC 2 cut(s) 210, 559
BpiI GAAGAC 2 cut(s) 462, 593
Bpu10I CCTNAGC 1 cut(s) 504
Bpu1102I GCTNAGC 1 cut(s) 351
BpuMI CCSGG 1 cut(s) 198
BsaAI YACGTR 1 cut(s) 443
Bsc4I CCNNNNNNNGG 1 cut(s) 622
Bse118I RCCGGY 1 cut(s) 622
BseGI GGATG 3 cut(s) 30, 57, 612
BseLI CCNNNNNNNGG 1 cut(s) 622
BseMII CTCAG 3 cut(s) 333, 398, 495
BseRI GAGGAG 3 cut(s) 329, 332, 424
BseSI GKGCMC 1 cut(s) 531
BseXI GCAGC 3 cut(s) 289, 386, 529
BshFI GGCC 1 cut(s) 177
BshNI GGYRCC 1 cut(s) 589
BsiHKAI GWGCWC 1 cut(s) 531
BsiSI CCGG 2 cut(s) 198, 623
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 622
BsmFI GGGAC 1 cut(s) 224
BsnI GGCC 1 cut(s) 177
Bsp1286I GDGCHC 1 cut(s) 531
Bsp143I GATC 2 cut(s) 76, 493
Bsp1720I GCTNAGC 1 cut(s) 351
BspACI CCGC 2 cut(s) 280, 626
BspANI GGCC 1 cut(s) 177
BspCNI CTCAG 3 cut(s) 334, 399, 496
BspLI GGNNCC 1 cut(s) 591
BspPI GGATC 1 cut(s) 84
BspT107I GGYRCC 1 cut(s) 589
BspTI CTTAAG 1 cut(s) 10
BsrFI RCCGGY 1 cut(s) 622
BssAI RCCGGY 1 cut(s) 622
BssMI GATC 2 cut(s) 76, 493
Bst4CI ACNGT 3 cut(s) 184, 337, 574
Bst6I CTCTTC 2 cut(s) 300, 306
BstAFI CTTAAG 1 cut(s) 10
BstBAI YACGTR 1 cut(s) 443
BstC8I GCNNGC 5 cut(s) 7, 175, 234, 293, 624
BstDEI CTNAG 4 cut(s) 342, 351, 407, 504
BstF5I GGATG 3 cut(s) 30, 57, 612
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 2 cut(s) 79, 496
BstMBI GATC 2 cut(s) 76, 493
BstMWI GCNNNNNNNGC 4 cut(s) 174, 229, 509, 526
BstSCI CCNGG 1 cut(s) 196
BstSFI CTRYAG 1 cut(s) 462
BstSLI GKGCMC 1 cut(s) 531
BstV1I GCAGC 3 cut(s) 289, 386, 529
BstV2I GAAGAC 2 cut(s) 462, 593
BstX2I RGATCY 1 cut(s) 493
BstYI RGATCY 1 cut(s) 493
BsuRI GGCC 1 cut(s) 177
BtsCI GGATG 3 cut(s) 30, 57, 612
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 5 cut(s) 7, 175, 234, 293, 624
CfoI GCGC 1 cut(s) 196
Cfr10I RCCGGY 1 cut(s) 622
CseI GACGC 2 cut(s) 467, 587
Csp6I GTAC 4 cut(s) 121, 404, 438, 663
CviAII CATG 1 cut(s) 82
CviJI RGCY 9 cut(s) 5, 9, 66, 163, 173, 177, 350, 503, 520
CviKI_1 RGCY 9 cut(s) 5, 9, 66, 163, 173, 177, 350, 503, 520
CviQI GTAC 4 cut(s) 121, 404, 438, 663
DdeI CTNAG 4 cut(s) 342, 351, 407, 504
DpnI GATC 2 cut(s) 78, 495
DpnII GATC 2 cut(s) 76, 493
EaeI YGGCCR 1 cut(s) 175
Eam1104I CTCTTC 2 cut(s) 300, 306
EarI CTCTTC 2 cut(s) 300, 306
Eco72I CACGTG 1 cut(s) 443
FaeI CATG 1 cut(s) 85
FaiI YATR 7 cut(s) 63, 83, 102, 258, 464, 585, 670
FaqI GGGAC 1 cut(s) 224
FatI CATG 1 cut(s) 81
FauI CCCGC 1 cut(s) 619
Fnu4HI GCNGC 3 cut(s) 278, 375, 518
FokI GGATG 3 cut(s) 17, 44, 599
Fsp4HI GCNGC 3 cut(s) 278, 375, 518
GlaI GCGC 1 cut(s) 195
GluI GCNGC 3 cut(s) 278, 375, 518
HaeIII GGCC 1 cut(s) 177
HapII CCGG 2 cut(s) 198, 623
HgaI GACGC 2 cut(s) 467, 587
HhaI GCGC 1 cut(s) 196
Hin1II CATG 1 cut(s) 85
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HincII GTYRAC 1 cut(s) 570
HindII GTYRAC 1 cut(s) 570
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 3 cut(s) 71, 634, 643
HpaI GTTAAC 1 cut(s) 570
HpaII CCGG 2 cut(s) 198, 623
Hpy166II GTNNAC 3 cut(s) 440, 529, 570
Hpy188I TCNGA 5 cut(s) 70, 76, 343, 369, 606
Hpy188III TCNNGA 3 cut(s) 299, 386, 425
Hpy8I GTNNAC 3 cut(s) 440, 529, 570
HpyAV CCTTC 2 cut(s) 181, 364
HpyCH4III ACNGT 3 cut(s) 184, 337, 574
HpyCH4IV ACGT 2 cut(s) 442, 546
HpyCH4V TGCA 4 cut(s) 446, 529, 550, 668
HpyF10VI GCNNNNNNNGC 4 cut(s) 174, 229, 509, 526
HpyF3I CTNAG 4 cut(s) 342, 351, 407, 504
HpySE526I ACGT 2 cut(s) 442, 546
Hsp92II CATG 1 cut(s) 85
HspAI GCGC 1 cut(s) 194
KroI GCCGGC 1 cut(s) 622
KroNI GCCGGC 1 cut(s) 624
KspAI GTTAAC 1 cut(s) 570
Kzo9I GATC 2 cut(s) 76, 493
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 8 cut(s) 159, 191, 211, 305, 371, 386, 492, 636
Lsp1109I GCAGC 3 cut(s) 289, 386, 529
LweI GCATC 2 cut(s) 210, 559
MaeII ACGT 2 cut(s) 442, 546
MaeIII GTNAC 2 cut(s) 331, 481
MalI GATC 2 cut(s) 78, 495
MboI GATC 2 cut(s) 76, 493
MboII GAAGA 8 cut(s) 295, 314, 317, 323, 467, 503, 593, 643
MflI RGATCY 1 cut(s) 493
MhlI GDGCHC 1 cut(s) 531
MlsI TGGCCA 1 cut(s) 177
MluCI AATT 3 cut(s) 286, 381, 467
MluNI TGGCCA 1 cut(s) 177
MlyI GAGTC 2 cut(s) 65, 637
MmeI TCCRAC 2 cut(s) 93, 111
Mox20I TGGCCA 1 cut(s) 177
MroNI GCCGGC 1 cut(s) 622
MscI TGGCCA 1 cut(s) 177
MseI TTAA 6 cut(s) 11, 45, 324, 569, 648, 654
Msp20I TGGCCA 1 cut(s) 177
MspA1I CMGCKG 1 cut(s) 280
MspCI CTTAAG 1 cut(s) 10
MspI CCGG 2 cut(s) 198, 623
MspR9I CCNGG 1 cut(s) 198
MwoI GCNNNNNNNGC 4 cut(s) 174, 229, 509, 526
NaeI GCCGGC 1 cut(s) 624
NciI CCSGG 1 cut(s) 198
NdeII GATC 2 cut(s) 76, 493
NgoMIV GCCGGC 1 cut(s) 622
NlaIII CATG 1 cut(s) 85
NlaIV GGNNCC 1 cut(s) 591
NmuCI GTSAC 1 cut(s) 481
PdiI GCCGGC 1 cut(s) 624
PfeI GAWTC 1 cut(s) 634
PkrI GCNGC 3 cut(s) 279, 376, 519
PleI GAGTC 2 cut(s) 65, 637
PmaCI CACGTG 1 cut(s) 443
PmlI CACGTG 1 cut(s) 443
PpsI GAGTC 2 cut(s) 65, 637
Ppu21I YACGTR 1 cut(s) 443
PspCI CACGTG 1 cut(s) 443
PspN4I GGNNCC 1 cut(s) 591
PsuI RGATCY 1 cut(s) 493
RsaI GTAC 4 cut(s) 122, 405, 439, 664
RsaNI GTAC 4 cut(s) 121, 404, 438, 663
SaqAI TTAA 6 cut(s) 11, 45, 324, 569, 648, 654
SatI GCNGC 3 cut(s) 278, 375, 518
Sau3AI GATC 2 cut(s) 76, 493
SchI GAGTC 2 cut(s) 65, 637
ScrFI CCNGG 1 cut(s) 198
SduI GDGCHC 1 cut(s) 531
SfaNI GCATC 2 cut(s) 210, 559
SfcI CTRYAG 1 cut(s) 462
SmlI CTYRAG 1 cut(s) 10
SmoI CTYRAG 1 cut(s) 10
Sse9I AATT 3 cut(s) 286, 381, 467
SsiI CCGC 2 cut(s) 280, 626
StyD4I CCNGG 1 cut(s) 196
TaaI ACNGT 3 cut(s) 184, 337, 574
TaiI ACGT 2 cut(s) 445, 549
TasI AATT 3 cut(s) 286, 381, 467
TfiI GAWTC 1 cut(s) 634
Tru1I TTAA 6 cut(s) 11, 45, 324, 569, 648, 654
Tru9I TTAA 6 cut(s) 11, 45, 324, 569, 648, 654
TscAI CASTG 1 cut(s) 189
TseFI GTSAC 1 cut(s) 481
TseI GCWGC 3 cut(s) 277, 374, 517
Tsp45I GTSAC 1 cut(s) 481
TspGWI ACGGA 4 cut(s) 23, 425, 503, 650
TspRI CASTG 1 cut(s) 189
Vha464I CTTAAG 1 cut(s) 10
VneI GTGCAC 1 cut(s) 527
XapI RAATTY 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.