Rh1CG424100

50S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0015063
Physical Location & Seq
Reverse (-)
68310063 .. 68312272
2210 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG424100.1

Sequence Viewer

Length: 555 bp
ATGGCTTGTATACGAAATGGCAGAAATGCCCTCCGTCAGATCATCCGAGACACTCACAACGCCGTCCATTCTTCCGAGTCGGAGCGCATGATGAATCCTCTGGTTTTCGCTTGCCAAGGAGTCCGGCATAGGAAATTGGAAGTGATTTTGACGACGAATGTGGATAAGCTCGGCAAGGCCGGTGAGACTGTGAAGGTTGCGCCGGGGCATTTCCGCAACCACTTGATGCCGAAATTGCTTGCTGTACCCAACATTGACAAGTATGCCTATCTCATAAGACAGCAGCGAAAGAATGCCCCCCTGGAAGAAGAGGAGGAGAAGGAGGAGGTTAAAGTGGTTACTGTGTCCGAGGAAGTTAAGATGAAAGAATATGAAAAGGCAGCGAAGCGTCTGGATAATGCTCGTCTGGTATTGCGGAGGAACATTAATCTTGAAAAGTTGAGGACACGTGCAACAAAGGAAGACCCTATAGAATTGCGTTCTACAGTGACCAAGGAGGATATTGTGGCTGAGGTATGGTTTTGTCCTTTGTTGTCTTCAAACTTCAGACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L9_C Ribosomal_L9_N

Protein Analysis

184

Amino Acids

21.27

Weight (kDa)

9.51

Isoelectric Point (pI)

60.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L9_N PF01281 47 - 83 4.7e-13 Ribosomal protein L9, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015063)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53070
fragaria_vesca FvH4_7g32000
malus_domestica MD07G1293600.v1.1
prunus_persica Prupe.2G313400_v2.0.a1 Prupe.2G313400_v2.0.a1 Prupe.2G313400_v2.0.a1
pyrus_communis pycom07g26640
rosa_chinensis RchiOBHm_Chr1g0381511
rosa_laevigata RLG00000026226
rosa_roxburghii Rroxscaffold_4G00278600
rosa_rugosa Rorug01G0429100
rosa_samantha Rh1AG452300 Rh1BG409600 Rh1CG424100 Rh1DG440900
rosa_wichuraiana Rw1G039490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 10
AciI CCGC 2 cut(s) 214, 415
AcuI CTGAAG 1 cut(s) 529
AcvI CACGTG 1 cut(s) 449
AfaI GTAC 1 cut(s) 246
AflIII ACRYGT 1 cut(s) 446
AgsI TTSAA 2 cut(s) 434, 540
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
Alw26I GTCTC 2 cut(s) 42, 179
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 2 cut(s) 283, 380
AseI ATTAAT 1 cut(s) 426
AspLEI GCGC 2 cut(s) 87, 202
AsuC2I CCSGG 1 cut(s) 204
AsuHPI GGTGA 1 cut(s) 194
BbrPI CACGTG 1 cut(s) 449
BbsI GAAGAC 2 cut(s) 468, 528
BbvCI CCTCAGC 1 cut(s) 510
BbvI GCAGC 2 cut(s) 295, 392
BceAI ACGGC 1 cut(s) 47
BciT130I CCWGG 1 cut(s) 302
BcnI CCSGG 1 cut(s) 204
BcoDI GTCTC 2 cut(s) 42, 179
BfmI CTRYAG 2 cut(s) 468, 483
BisI GCNGC 2 cut(s) 284, 381
BlsI GCNGC 2 cut(s) 285, 382
Bme1390I CCNGG 2 cut(s) 204, 302
BmrFI CCNGG 2 cut(s) 204, 302
BmsI GCATC 1 cut(s) 216
BpiI GAAGAC 2 cut(s) 468, 528
Bpu10I CCTNAGC 1 cut(s) 510
BpuMI CCSGG 1 cut(s) 204
BsaAI YACGTR 1 cut(s) 449
BsaJI CCNNGG 5 cut(s) 115, 203, 300, 348, 492
Bse118I RCCGGY 1 cut(s) 179
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 5 cut(s) 115, 203, 300, 348, 492
BseGI GGATG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 501
BseRI GAGGAG 3 cut(s) 326, 329, 338
BseXI GCAGC 2 cut(s) 295, 392
BshFI GGCC 1 cut(s) 179
BsiSI CCGG 3 cut(s) 124, 180, 203
BsmAI GTCTC 2 cut(s) 42, 179
BsmI GAATGC 1 cut(s) 298
BsnI GGCC 1 cut(s) 179
Bsp143I GATC 1 cut(s) 39
BspACI CCGC 2 cut(s) 214, 415
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 1 cut(s) 502
BsrFI RCCGGY 1 cut(s) 179
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 5 cut(s) 115, 203, 300, 348, 492
BssMI GATC 1 cut(s) 39
BssNAI GTATAC 1 cut(s) 11
BssT1I CCWWGG 2 cut(s) 115, 492
Bst1107I GTATAC 1 cut(s) 11
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 3 cut(s) 190, 343, 487
Bst6I CTCTTC 1 cut(s) 303
BstBAI YACGTR 1 cut(s) 449
BstC8I GCNNGC 2 cut(s) 112, 240
BstDEI CTNAG 1 cut(s) 510
BstF5I GGATG 1 cut(s) 42
BstHHI GCGC 2 cut(s) 87, 202
BstKTI GATC 1 cut(s) 42
BstMAI GTCTC 2 cut(s) 42, 179
BstMBI GATC 1 cut(s) 39
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 2 cut(s) 202, 300
BstSFI CTRYAG 2 cut(s) 468, 483
BstV1I GCAGC 2 cut(s) 295, 392
BstV2I GAAGAC 2 cut(s) 468, 528
BstZ17I GTATAC 1 cut(s) 11
BsuRI GGCC 1 cut(s) 179
BtsCI GGATG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 492
Cac8I GCNNGC 2 cut(s) 112, 240
CfoI GCGC 2 cut(s) 87, 202
Cfr10I RCCGGY 1 cut(s) 179
CseI GACGC 1 cut(s) 377
Csp6I GTAC 1 cut(s) 245
CviAII CATG 1 cut(s) 88
CviJI RGCY 4 cut(s) 5, 169, 179, 509
CviKI_1 RGCY 4 cut(s) 5, 169, 179, 509
CviQI GTAC 1 cut(s) 245
DdeI CTNAG 1 cut(s) 510
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
Eco130I CCWWGG 2 cut(s) 115, 492
Eco57I CTGAAG 1 cut(s) 529
Eco72I CACGTG 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 300
EcoT14I CCWWGG 2 cut(s) 115, 492
ErhI CCWWGG 2 cut(s) 115, 492
FaeI CATG 1 cut(s) 91
FaiI YATR 8 cut(s) 11, 89, 129, 264, 275, 372, 470, 517
FatI CATG 1 cut(s) 87
FblI GTMKAC 1 cut(s) 10
Fnu4HI GCNGC 2 cut(s) 284, 381
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 2 cut(s) 284, 381
GlaI GCGC 2 cut(s) 86, 201
GluI GCNGC 2 cut(s) 284, 381
HaeIII GGCC 1 cut(s) 179
HapII CCGG 3 cut(s) 124, 180, 203
HgaI GACGC 1 cut(s) 377
HhaI GCGC 2 cut(s) 87, 202
Hin1II CATG 1 cut(s) 91
Hin6I GCGC 2 cut(s) 85, 200
HinP1I GCGC 2 cut(s) 85, 200
HinfI GANTC 3 cut(s) 77, 94, 120
HpaII CCGG 3 cut(s) 124, 180, 203
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 1 cut(s) 11
Hpy188I TCNGA 6 cut(s) 39, 47, 76, 82, 349, 548
Hpy188III TCNNGA 2 cut(s) 392, 431
Hpy8I GTNNAC 1 cut(s) 11
Hpy99I CGWCG 1 cut(s) 157
HpyAV CCTTC 2 cut(s) 187, 313
HpyCH4III ACNGT 3 cut(s) 190, 343, 487
HpyCH4IV ACGT 1 cut(s) 448
HpyCH4V TGCA 1 cut(s) 452
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
HpyF3I CTNAG 1 cut(s) 510
HpySE526I ACGT 1 cut(s) 448
Hsp92II CATG 1 cut(s) 91
HspAI GCGC 2 cut(s) 85, 200
Kzo9I GATC 1 cut(s) 39
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 8 cut(s) 86, 137, 193, 216, 287, 314, 377, 392
Lsp1109I GCAGC 2 cut(s) 295, 392
LweI GCATC 1 cut(s) 216
MaeII ACGT 1 cut(s) 448
MaeIII GTNAC 2 cut(s) 337, 487
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MboII GAAGA 5 cut(s) 63, 317, 320, 473, 528
MluCI AATT 3 cut(s) 134, 233, 473
MlyI GAGTC 2 cut(s) 86, 129
MmeI TCCRAC 1 cut(s) 60
MseI TTAA 3 cut(s) 330, 357, 426
MspI CCGG 3 cut(s) 124, 180, 203
MspR9I CCNGG 2 cut(s) 204, 302
Mva1269I GAATGC 1 cut(s) 298
MvaI CCWGG 1 cut(s) 302
MwoI GCNNNNNNNGC 1 cut(s) 235
NciI CCSGG 1 cut(s) 204
NdeII GATC 1 cut(s) 39
NlaIII CATG 1 cut(s) 91
NmeAIII GCCGAG 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 487
PctI GAATGC 1 cut(s) 298
PfeI GAWTC 1 cut(s) 94
PkrI GCNGC 2 cut(s) 285, 382
PleI GAGTC 2 cut(s) 85, 128
PmaCI CACGTG 1 cut(s) 449
PmlI CACGTG 1 cut(s) 449
PpsI GAGTC 2 cut(s) 85, 128
Ppu21I YACGTR 1 cut(s) 449
PshBI ATTAAT 1 cut(s) 426
Psp6I CCWGG 1 cut(s) 300
PspCI CACGTG 1 cut(s) 449
PspGI CCWGG 1 cut(s) 300
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
SaqAI TTAA 3 cut(s) 330, 357, 426
SatI GCNGC 2 cut(s) 284, 381
Sau3AI GATC 1 cut(s) 39
SchI GAGTC 2 cut(s) 86, 129
ScrFI CCNGG 2 cut(s) 204, 302
SetI ASST 6 cut(s) 171, 198, 330, 451, 516, 553
SfaNI GCATC 1 cut(s) 216
SfcI CTRYAG 2 cut(s) 468, 483
Sse9I AATT 3 cut(s) 134, 233, 473
SsiI CCGC 2 cut(s) 214, 415
StyD4I CCNGG 2 cut(s) 202, 300
StyI CCWWGG 2 cut(s) 115, 492
TaaI ACNGT 3 cut(s) 190, 343, 487
TaiI ACGT 1 cut(s) 451
TasI AATT 3 cut(s) 134, 233, 473
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 3 cut(s) 330, 357, 426
Tru9I TTAA 3 cut(s) 330, 357, 426
TscAI CASTG 1 cut(s) 492
TseFI GTSAC 1 cut(s) 487
TseI GCWGC 2 cut(s) 283, 380
Tsp45I GTSAC 1 cut(s) 487
TspDTI ATGAA 3 cut(s) 107, 377, 387
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 1 cut(s) 492
VspI ATTAAT 1 cut(s) 426
XmiI GTMKAC 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.