AT5G53730

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015397
Physical Location & Seq
Reverse (-)
21807623 .. 21809004
1382 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G53730.1

Sequence Viewer

Length: 642 bp
ATGTCTCAAATCTCCATAACTTCTCCAAAACATTGCGCCAAGAAAGGAGGGATTAACATCAACAATCGCCACAAGAAACTATTTTTCACATTCTCAACTTTCTTCTCTGGCCTTCTCCTCATCATCTTCCTCGTTTGGCTCATCCTCCACCCCGAGAGACCCGAGTTCTCCCTCACAGAAGCCGATATATACAGCCTCAACCTCACCACCTCCTCCACTCATCTCCTCAACTCTTCAGTCCAACTAACTCTCTTCTCCAAAAACCCTAACAAAAAAGTCGGGATCTACTACGACAAGCTACTCGTATATGCAGCGTATAGGGGACAACAAATCACATCAGAGGCCTCTCTACCGCCTTTTTATCAATCCCATGAAGAAATCAATCTCTTGACAGCGTTTCTTCAAGGGACTGAGCTACCCGTTGCCCAGTCCTTTGGTTATCAAATCAGTCGTGAACGGTCAACTGGTAAAATAATCATCGGTATGAAGATGGACGGGAAACTACGGTGGAAGATCGGGACATGGGTCTCGGGTGCATACCGGTTTAATGTGAATTGTCTTGCAATTGTGGCTTTTGGAATGAACATGACCACTCCTCCCTTAGCTTCATTACAAGGGACTCGTTGCTCTACAACTATATGA

Protein Analysis

213

Amino Acids

23.91

Weight (kDa)

9.65

Isoelectric Point (pI)

47.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 86 - 186 1.5e-08 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53730
fragaria_vesca FvH4_7g32930
malus_domestica MD01G1228300.v1.1 MD07G1299200.v1.1
prunus_persica Prupe.2G319000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0382891
rosa_laevigata RLG00000026151
rosa_multiflora Rmu_co8420301.1_g000001 Rmu_sc0010366.1_g000005
rosa_roxburghii Rroxscaffold_4G00277800
rosa_rugosa Rorug01G0437100
rosa_samantha Rh1AG462100 Rh1BG419200 Rh1CG432800 Rh1DG451200
rosa_wichuraiana Rw1G040970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 353
AclWI GGATC 1 cut(s) 290
AcuI CTGAAG 1 cut(s) 219
AgeI ACCGGT 1 cut(s) 540
AgsI TTSAA 1 cut(s) 404
AluBI AGCT 3 cut(s) 298, 415, 605
AluI AGCT 3 cut(s) 298, 415, 605
Alw26I GTCTC 3 cut(s) 9, 151, 532
AlwI GGATC 1 cut(s) 290
Ama87I CYCGRG 3 cut(s) 152, 161, 529
AoxI GGCC 2 cut(s) 109, 342
ApeKI GCWGC 1 cut(s) 311
AsiGI ACCGGT 1 cut(s) 540
AspLEI GCGC 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 196
AvaI CYCGRG 3 cut(s) 152, 161, 529
BbvI GCAGC 1 cut(s) 323
BccI CCATC 1 cut(s) 484
BcoDI GTCTC 3 cut(s) 9, 151, 532
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
BmeT110I CYCGRG 3 cut(s) 152, 161, 529
BmrI ACTGGG 1 cut(s) 421
BmuI ACTGGG 1 cut(s) 421
BoxI GACNNNNGTC 1 cut(s) 524
Bpu10I CCTNAGC 1 cut(s) 601
BsaBI GATNNNNATC 1 cut(s) 56
BsaI GGTCTC 2 cut(s) 151, 532
BsaWI WCCGGW 1 cut(s) 540
BsaXI ACNNNNNCTCC 2 cut(s) 580, 610
Bse118I RCCGGY 1 cut(s) 540
Bse1I ACTGG 2 cut(s) 427, 469
Bse3DI GCAATG 1 cut(s) 31
Bse8I GATNNNNATC 1 cut(s) 56
BseGI GGATG 1 cut(s) 141
BseJI GATNNNNATC 1 cut(s) 56
BseMI GCAATG 1 cut(s) 31
BseMII CTCAG 1 cut(s) 402
BseNI ACTGG 2 cut(s) 427, 469
BseRI GAGGAG 4 cut(s) 107, 202, 215, 585
BseXI GCAGC 1 cut(s) 323
BshFI GGCC 2 cut(s) 111, 344
BshTI ACCGGT 1 cut(s) 540
BsiHKCI CYCGRG 3 cut(s) 152, 161, 529
BsiSI CCGG 1 cut(s) 541
BslFI GGGAC 4 cut(s) 336, 421, 532, 631
BsmAI GTCTC 3 cut(s) 9, 151, 532
BsmFI GGGAC 4 cut(s) 336, 421, 532, 631
BsnI GGCC 2 cut(s) 111, 344
Bso31I GGTCTC 2 cut(s) 151, 532
BsoBI CYCGRG 3 cut(s) 152, 161, 529
Bsp143I GATC 2 cut(s) 282, 513
BspACI CCGC 1 cut(s) 353
BspANI GGCC 2 cut(s) 111, 344
BspCNI CTCAG 1 cut(s) 403
BspPI GGATC 1 cut(s) 290
BspTNI GGTCTC 2 cut(s) 151, 532
BsrDI GCAATG 1 cut(s) 31
BsrFI RCCGGY 1 cut(s) 540
BsrI ACTGG 2 cut(s) 427, 469
BssAI RCCGGY 1 cut(s) 540
BssMI GATC 2 cut(s) 282, 513
Bst4CI ACNGT 2 cut(s) 459, 507
Bst6I CTCTTC 2 cut(s) 238, 257
BstDEI CTNAG 2 cut(s) 411, 601
BstF5I GGATG 1 cut(s) 141
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 2 cut(s) 285, 516
BstMAI GTCTC 3 cut(s) 9, 151, 532
BstMBI GATC 2 cut(s) 282, 513
BstMWI GCNNNNNNNGC 1 cut(s) 569
BstPAI GACNNNNGTC 1 cut(s) 524
BstV1I GCAGC 1 cut(s) 323
BstX2I RGATCY 1 cut(s) 282
BstXI CCANNNNNNTGG 1 cut(s) 434
BstYI RGATCY 1 cut(s) 282
BsuRI GGCC 2 cut(s) 111, 344
BtsCI GGATG 1 cut(s) 141
CfoI GCGC 1 cut(s) 38
Cfr10I RCCGGY 1 cut(s) 540
CspAI ACCGGT 1 cut(s) 540
CviAII CATG 3 cut(s) 371, 522, 586
CviJI RGCY 9 cut(s) 111, 139, 182, 195, 298, 344, 415, 572, 605
CviKI_1 RGCY 9 cut(s) 111, 139, 182, 195, 298, 344, 415, 572, 605
DdeI CTNAG 2 cut(s) 411, 601
DpnI GATC 2 cut(s) 284, 515
DpnII GATC 2 cut(s) 282, 513
Eam1104I CTCTTC 2 cut(s) 238, 257
EarI CTCTTC 2 cut(s) 238, 257
Eco147I AGGCCT 1 cut(s) 344
Eco31I GGTCTC 2 cut(s) 151, 532
Eco57I CTGAAG 1 cut(s) 219
Eco88I CYCGRG 3 cut(s) 152, 161, 529
FaeI CATG 3 cut(s) 374, 525, 589
FaqI GGGAC 4 cut(s) 336, 421, 532, 631
FatI CATG 3 cut(s) 370, 521, 585
Fnu4HI GCNGC 1 cut(s) 312
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 312
GlaI GCGC 1 cut(s) 37
GluI GCNGC 1 cut(s) 312
HaeIII GGCC 2 cut(s) 111, 344
HapII CCGG 1 cut(s) 541
HhaI GCGC 1 cut(s) 38
Hin1II CATG 3 cut(s) 374, 525, 589
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HincII GTYRAC 1 cut(s) 462
HindII GTYRAC 1 cut(s) 462
HinfI GANTC 1 cut(s) 619
HpaII CCGG 1 cut(s) 541
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 2 cut(s) 455, 462
Hpy188I TCNGA 1 cut(s) 340
Hpy188III TCNNGA 4 cut(s) 280, 388, 452, 517
Hpy8I GTNNAC 2 cut(s) 455, 462
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 2 cut(s) 459, 507
HpyCH4V TGCA 3 cut(s) 311, 536, 563
HpyF10VI GCNNNNNNNGC 1 cut(s) 569
HpyF3I CTNAG 2 cut(s) 411, 601
Hsp92II CATG 3 cut(s) 374, 525, 589
HspAI GCGC 1 cut(s) 36
Kzo9I GATC 2 cut(s) 282, 513
LpnPI CCDG 4 cut(s) 93, 440, 450, 554
Lsp1109I GCAGC 1 cut(s) 323
MalI GATC 2 cut(s) 284, 515
MboI GATC 2 cut(s) 282, 513
MboII GAAGA 8 cut(s) 94, 118, 225, 244, 386, 392, 499, 523
MfeI CAATTG 1 cut(s) 564
MflI RGATCY 1 cut(s) 282
MluCI AATT 2 cut(s) 553, 564
MlyI GAGTC 1 cut(s) 613
MmeI TCCRAC 1 cut(s) 265
MseI TTAA 2 cut(s) 54, 546
MslI CAYNNNNRTG 1 cut(s) 482
MspI CCGG 1 cut(s) 541
MunI CAATTG 1 cut(s) 564
MwoI GCNNNNNNNGC 1 cut(s) 569
NdeII GATC 2 cut(s) 282, 513
NlaIII CATG 3 cut(s) 374, 525, 589
PceI AGGCCT 1 cut(s) 344
PinAI ACCGGT 1 cut(s) 540
PkrI GCNGC 1 cut(s) 313
PleI GAGTC 1 cut(s) 613
PpsI GAGTC 1 cut(s) 613
PshAI GACNNNNGTC 1 cut(s) 524
PsuI RGATCY 1 cut(s) 282
RseI CAYNNNNRTG 1 cut(s) 482
SaqAI TTAA 2 cut(s) 54, 546
SatI GCNGC 1 cut(s) 312
Sau3AI GATC 2 cut(s) 282, 513
SchI GAGTC 1 cut(s) 613
SetI ASST 5 cut(s) 204, 212, 300, 417, 607
SmiMI CAYNNNNRTG 1 cut(s) 482
Sse9I AATT 2 cut(s) 553, 564
SseBI AGGCCT 1 cut(s) 344
SsiI CCGC 1 cut(s) 353
StuI AGGCCT 1 cut(s) 344
TaaI ACNGT 2 cut(s) 459, 507
TasI AATT 2 cut(s) 553, 564
Tru1I TTAA 2 cut(s) 54, 546
Tru9I TTAA 2 cut(s) 54, 546
TseI GCWGC 1 cut(s) 311
TspDTI ATGAA 4 cut(s) 387, 500, 596, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.