Rh1CG432800

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0015397
Physical Location & Seq
Forward (+)
68882700 .. 68884544
1845 bp
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UTR
Exon/CDS
Intron
Rh1CG432800.1

Sequence Viewer

Length: 639 bp
ATGTCTCAAGCCCACACGAAATCTCCTAAACACTGTGGCGATAAGCACGGACTGAAAATTAACAAGCTCTACAAGAAGCTATTCGCAGTATTCTCTTCACTTTTCACCACAATCCTCTGTGTAATATTACTTGTTTGGCTTATACTACACCCCACCAAGCCTCAGTTCTCTCTCAAAGAAGCTGATATCTACCAGCTCAACCTCTCAGGAACCAATAACCTCCTCAACTCCTCCGTCCAACTCACCTTGCTTTCCAAGAATCCCAATCAAAAAGTTGGCATTTACTACGACGAGCTTCAAGTCTATGCTCAATACAAAGGCCAACAGATCACAGTTTACACATCTCTGCCTCCTTTCTACCAGGGACACGAAGACAGCAATGTCTTGACGGCTTCTTTGATTGGAAATGGTTTGCCGGTGGCTCCCTCCTTCGGTTATGAAGTGGGTAGTGATCAGACGGCTGGGAGACTGGTTTTGAATCTCAAAGTGCTCGGACGACTAAGGTGGAAGGTAGGAACTTGGGTGTCCGGGAGATACAGAGTGAACGTGGATTGTGTTGCTGTTATGACTTTCGGTCCTTCTCTCCCAACAGGTCCACTCACTACTAGGCAGGGGACTCAGTGTTCTACCACTGTCTGA

Protein Analysis

212

Amino Acids

23.44

Weight (kDa)

9.52

Isoelectric Point (pI)

24.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 82 - 185 1.8e-11 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53730
fragaria_vesca FvH4_7g32930
malus_domestica MD01G1228300.v1.1 MD07G1299200.v1.1
prunus_persica Prupe.2G319000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0382891
rosa_laevigata RLG00000026151
rosa_multiflora Rmu_co8420301.1_g000001 Rmu_sc0010366.1_g000005
rosa_roxburghii Rroxscaffold_4G00277800
rosa_rugosa Rorug01G0437100
rosa_samantha Rh1AG462100 Rh1BG419200 Rh1CG432800 Rh1DG451200
rosa_wichuraiana Rw1G040970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 380
AfiI CCNNNNNNNGG 1 cut(s) 431
AgsI TTSAA 2 cut(s) 299, 478
AhdI GACNNNNNGTC 1 cut(s) 573
AjnI CCWGG 1 cut(s) 360
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AloI GAACNNNNNNTCC 2 cut(s) 607, 639
AluBI AGCT 5 cut(s) 67, 79, 182, 196, 295
AluI AGCT 5 cut(s) 67, 79, 182, 196, 295
Alw21I GWGCWC 1 cut(s) 492
Alw26I GTCTC 2 cut(s) 9, 460
AoxI GGCC 1 cut(s) 319
ArsI GACNNNNNNTTYG 2 cut(s) 379, 411
Asp700I GAANNNNTTC 1 cut(s) 80
AspS9I GGNCC 2 cut(s) 575, 593
AsuC2I CCSGG 1 cut(s) 529
AsuHPI GGTGA 2 cut(s) 97, 235
AvaII GGWCC 2 cut(s) 575, 593
BbsI GAAGAC 1 cut(s) 378
Bbv12I GWGCWC 1 cut(s) 492
BceAI ACGGC 2 cut(s) 405, 474
BciT130I CCWGG 1 cut(s) 362
BclI TGATCA 1 cut(s) 451
BcnI CCSGG 1 cut(s) 529
BcoDI GTCTC 2 cut(s) 9, 460
BfaI CTAG 1 cut(s) 606
Bme1390I CCNGG 2 cut(s) 362, 529
Bme18I GGWCC 2 cut(s) 575, 593
BmeRI GACNNNNNGTC 1 cut(s) 573
BmgT120I GGNCC 2 cut(s) 575, 593
BmiI GGNNCC 2 cut(s) 211, 423
BmrFI CCNGG 2 cut(s) 362, 529
BpiI GAAGAC 1 cut(s) 378
BpuMI CCSGG 1 cut(s) 529
BsaJI CCNNGG 1 cut(s) 361
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 1 cut(s) 431
Bse118I RCCGGY 1 cut(s) 415
Bse1I ACTGG 1 cut(s) 474
Bse3DI GCAATG 1 cut(s) 385
BseBI CCWGG 1 cut(s) 362
BseDI CCNNGG 1 cut(s) 361
BseLI CCNNNNNNNGG 1 cut(s) 431
BseMI GCAATG 1 cut(s) 385
BseMII CTCAG 3 cut(s) 176, 219, 632
BseNI ACTGG 1 cut(s) 474
BseRI GAGGAG 2 cut(s) 212, 220
BseYI CCCAGC 1 cut(s) 461
BshFI GGCC 1 cut(s) 321
BsiHKAI GWGCWC 1 cut(s) 492
BsiSI CCGG 2 cut(s) 416, 528
BslFI GGGAC 2 cut(s) 378, 628
BslI CCNNNNNNNGG 1 cut(s) 431
BsmAI GTCTC 2 cut(s) 9, 460
BsmFI GGGAC 2 cut(s) 378, 628
BsnI GGCC 1 cut(s) 321
Bsp1286I GDGCHC 1 cut(s) 492
Bsp143I GATC 2 cut(s) 327, 451
BspANI GGCC 1 cut(s) 321
BspCNI CTCAG 3 cut(s) 175, 218, 631
BspLI GGNNCC 2 cut(s) 211, 423
BsrDI GCAATG 1 cut(s) 385
BsrFI RCCGGY 1 cut(s) 415
BsrI ACTGG 1 cut(s) 474
BssAI RCCGGY 1 cut(s) 415
BssECI CCNNGG 1 cut(s) 361
BssMI GATC 2 cut(s) 327, 451
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 3 cut(s) 35, 334, 634
Bst6I CTCTTC 1 cut(s) 100
BstDEI CTNAG 4 cut(s) 162, 205, 500, 618
BstKTI GATC 2 cut(s) 330, 454
BstMAI GTCTC 2 cut(s) 9, 460
BstMBI GATC 2 cut(s) 327, 451
BstNI CCWGG 1 cut(s) 362
BstSCI CCNGG 2 cut(s) 360, 527
BstV2I GAAGAC 1 cut(s) 378
BsuRI GGCC 1 cut(s) 321
BtsIMutI CAGTG 3 cut(s) 31, 626, 630
Cfr10I RCCGGY 1 cut(s) 415
Cfr13I GGNCC 2 cut(s) 575, 593
DdeI CTNAG 4 cut(s) 162, 205, 500, 618
DpnI GATC 2 cut(s) 329, 453
DpnII GATC 2 cut(s) 327, 451
DrdI GACNNNNNNGTC 1 cut(s) 380
DriI GACNNNNNGTC 1 cut(s) 573
DseDI GACNNNNNNGTC 1 cut(s) 380
Eam1104I CTCTTC 1 cut(s) 100
Eam1105I GACNNNNNGTC 1 cut(s) 573
EarI CTCTTC 1 cut(s) 100
Eco32I GATATC 1 cut(s) 187
Eco47I GGWCC 2 cut(s) 575, 593
EcoRII CCWGG 1 cut(s) 360
EcoRV GATATC 1 cut(s) 187
FaiI YATR 4 cut(s) 143, 306, 438, 566
FaqI GGGAC 2 cut(s) 378, 628
FbaI TGATCA 1 cut(s) 451
FspBI CTAG 1 cut(s) 606
GsaI CCCAGC 1 cut(s) 465
HaeIII GGCC 1 cut(s) 321
HapII CCGG 2 cut(s) 416, 528
HinfI GANTC 3 cut(s) 259, 478, 616
HpaII CCGG 2 cut(s) 416, 528
HphI GGTGA 2 cut(s) 97, 235
Hpy166II GTNNAC 3 cut(s) 337, 544, 596
Hpy188I TCNGA 3 cut(s) 456, 494, 638
Hpy188III TCNNGA 2 cut(s) 207, 385
Hpy8I GTNNAC 3 cut(s) 337, 544, 596
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 3 cut(s) 439, 502, 588
HpyCH4III ACNGT 3 cut(s) 35, 334, 634
HpyCH4IV ACGT 1 cut(s) 546
HpyF3I CTNAG 4 cut(s) 162, 205, 500, 618
HpySE526I ACGT 1 cut(s) 546
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 2 cut(s) 327, 451
LmnI GCTCC 1 cut(s) 427
MaeI CTAG 1 cut(s) 606
MaeII ACGT 1 cut(s) 546
MalI GATC 2 cut(s) 329, 453
MboI GATC 2 cut(s) 327, 451
MboII GAAGA 2 cut(s) 87, 383
MhlI GDGCHC 1 cut(s) 492
MluCI AATT 1 cut(s) 57
MlyI GAGTC 1 cut(s) 610
MmeI TCCRAC 1 cut(s) 262
MnlI CCTC 8 cut(s) 125, 171, 212, 230, 233, 241, 360, 436
MroXI GAANNNNTTC 1 cut(s) 80
MseI TTAA 1 cut(s) 60
MspI CCGG 2 cut(s) 416, 528
MspR9I CCNGG 2 cut(s) 362, 529
MvaI CCWGG 1 cut(s) 362
NciI CCSGG 1 cut(s) 529
NdeII GATC 2 cut(s) 327, 451
NlaIV GGNNCC 2 cut(s) 211, 423
PdmI GAANNNNTTC 1 cut(s) 80
PfeI GAWTC 2 cut(s) 259, 478
PfoI TCCNGGA 1 cut(s) 527
PleI GAGTC 1 cut(s) 610
PpsI GAGTC 1 cut(s) 610
Psp6I CCWGG 1 cut(s) 360
PspFI CCCAGC 1 cut(s) 461
PspGI CCWGG 1 cut(s) 360
PspN4I GGNNCC 2 cut(s) 211, 423
PspPI GGNCC 2 cut(s) 575, 593
SaqAI TTAA 1 cut(s) 60
Sau3AI GATC 2 cut(s) 327, 451
Sau96I GGNCC 2 cut(s) 575, 593
SchI GAGTC 1 cut(s) 610
ScrFI CCNGG 2 cut(s) 362, 529
SduI GDGCHC 1 cut(s) 492
SinI GGWCC 2 cut(s) 575, 593
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
Sse9I AATT 1 cut(s) 57
SspI AATATT 1 cut(s) 126
SspMI CTAG 1 cut(s) 606
StyD4I CCNGG 2 cut(s) 360, 527
TaaI ACNGT 3 cut(s) 35, 334, 634
TaiI ACGT 1 cut(s) 549
TaqII GACCGA 1 cut(s) 563
TasI AATT 1 cut(s) 57
TfiI GAWTC 2 cut(s) 259, 478
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TscAI CASTG 3 cut(s) 38, 626, 637
TspDTI ATGAA 1 cut(s) 453
TspGWI ACGGA 2 cut(s) 63, 223
TspRI CASTG 3 cut(s) 38, 626, 637
VpaK11BI GGWCC 2 cut(s) 575, 593
XmnI GAANNNNTTC 1 cut(s) 80
XspI CTAG 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.