Rw1G040970

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0015397
Physical Location & Seq
Reverse (-)
68033670 .. 68034674
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G040970.1

Sequence Viewer

Length: 639 bp
ATGTCTCAAGCCCTCACGAAATCTCCTAAACACTGTGGCGATAAGCACGGACTGAAAATTAACAAGCTCTACAAGAAGCTATTCGCAGTATTCTCTACACTTTTCACCACAATCCTCTGTTTAATATTACTTGTTTGGCTTATACTACACCCCACCAAGCCTCAGTTCTCTCTCAAAGAAGCTGATATCTACCTGCTCAACCTCTCCGGAACCAATAACCTCCTCAACTCCTCCGTCCAACTCACCTTGCTTTCCAAGAATCCCAATCAAAAAGTTGGCATTTACTACGACGAGCTTCAAGTCTATGCTCAATACAAAGGCCAACTGATCACAGTTTACACATCTCTGCCTCCTTTCTACCAAGGACACGAAGACAGCAATGTCTTGACGGCTTCTTTGATTGGAAATGGTTTGCCGGTGGCTCCCTCTTTTGGTTATGAAGTGGGTCGTGATCAGACGGCTGGGAGACTGGTTTTGAATCTCAAAGTGCTCGGACGACTAAGGTGGAAGGTAGGAACTTGGGTGTCCGGGAGATACAGAGTGAACGTGGATTGCGTTGCTGTTATGGCTTTCGGTCCTTCTCTCCCAACAGGTCCACTTACTACTAGGCAGGGGACTCAGTGTTCTACCACTGTCTGA

Protein Analysis

212

Amino Acids

23.45

Weight (kDa)

9.6

Isoelectric Point (pI)

24.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 82 - 185 4e-11 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015397)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53730
fragaria_vesca FvH4_7g32930
malus_domestica MD01G1228300.v1.1 MD07G1299200.v1.1
prunus_persica Prupe.2G319000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0382891
rosa_laevigata RLG00000026151
rosa_multiflora Rmu_co8420301.1_g000001 Rmu_sc0010366.1_g000005
rosa_roxburghii Rroxscaffold_4G00277800
rosa_rugosa Rorug01G0437100
rosa_samantha Rh1AG462100 Rh1BG419200 Rh1CG432800 Rh1DG451200
rosa_wichuraiana Rw1G040970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 380
Acc36I ACCTGC 1 cut(s) 201
AccIII TCCGGA 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 431
AgsI TTSAA 2 cut(s) 299, 478
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AloI GAACNNNNNNTCC 2 cut(s) 607, 639
AluBI AGCT 4 cut(s) 67, 79, 182, 295
AluI AGCT 4 cut(s) 67, 79, 182, 295
Alw21I GWGCWC 1 cut(s) 492
Alw26I GTCTC 2 cut(s) 9, 460
Aor13HI TCCGGA 1 cut(s) 206
AoxI GGCC 1 cut(s) 319
ArsI GACNNNNNNTTYG 2 cut(s) 379, 411
Asp700I GAANNNNTTC 1 cut(s) 80
AspS9I GGNCC 2 cut(s) 575, 593
AsuC2I CCSGG 1 cut(s) 529
AsuHPI GGTGA 2 cut(s) 97, 235
AvaII GGWCC 2 cut(s) 575, 593
BbsI GAAGAC 1 cut(s) 378
Bbv12I GWGCWC 1 cut(s) 492
BceAI ACGGC 2 cut(s) 405, 474
BclI TGATCA 2 cut(s) 327, 451
BcnI CCSGG 1 cut(s) 529
BcoDI GTCTC 2 cut(s) 9, 460
BfaI CTAG 1 cut(s) 606
BfuAI ACCTGC 1 cut(s) 201
Bme1390I CCNGG 1 cut(s) 529
Bme18I GGWCC 2 cut(s) 575, 593
BmgT120I GGNCC 2 cut(s) 575, 593
BmiI GGNNCC 2 cut(s) 211, 423
BmrFI CCNGG 1 cut(s) 529
BpiI GAAGAC 1 cut(s) 378
BpuMI CCSGG 1 cut(s) 529
BsaJI CCNNGG 1 cut(s) 361
BsaWI WCCGGW 1 cut(s) 206
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 1 cut(s) 431
Bse118I RCCGGY 1 cut(s) 415
Bse1I ACTGG 1 cut(s) 474
Bse3DI GCAATG 1 cut(s) 385
BseAI TCCGGA 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 361
BseLI CCNNNNNNNGG 1 cut(s) 431
BseMI GCAATG 1 cut(s) 385
BseMII CTCAG 2 cut(s) 176, 632
BseNI ACTGG 1 cut(s) 474
BseRI GAGGAG 2 cut(s) 212, 220
BseYI CCCAGC 1 cut(s) 461
BshFI GGCC 1 cut(s) 321
BsiHKAI GWGCWC 1 cut(s) 492
BsiSI CCGG 3 cut(s) 207, 416, 528
BslFI GGGAC 1 cut(s) 628
BslI CCNNNNNNNGG 1 cut(s) 431
BsmAI GTCTC 2 cut(s) 9, 460
BsmFI GGGAC 1 cut(s) 628
BsnI GGCC 1 cut(s) 321
Bsp1286I GDGCHC 1 cut(s) 492
Bsp13I TCCGGA 1 cut(s) 206
Bsp143I GATC 2 cut(s) 327, 451
BspANI GGCC 1 cut(s) 321
BspCNI CTCAG 2 cut(s) 175, 631
BspEI TCCGGA 1 cut(s) 206
BspLI GGNNCC 2 cut(s) 211, 423
BspMI ACCTGC 1 cut(s) 201
BsrDI GCAATG 1 cut(s) 385
BsrFI RCCGGY 1 cut(s) 415
BsrI ACTGG 1 cut(s) 474
BssAI RCCGGY 1 cut(s) 415
BssECI CCNNGG 1 cut(s) 361
BssMI GATC 2 cut(s) 327, 451
BssT1I CCWWGG 1 cut(s) 361
Bst4CI ACNGT 3 cut(s) 35, 334, 634
BstDEI CTNAG 3 cut(s) 162, 500, 618
BstKTI GATC 2 cut(s) 330, 454
BstMAI GTCTC 2 cut(s) 9, 460
BstMBI GATC 2 cut(s) 327, 451
BstMWI GCNNNNNNNGC 1 cut(s) 566
BstSCI CCNGG 1 cut(s) 527
BstV2I GAAGAC 1 cut(s) 378
BsuRI GGCC 1 cut(s) 321
BtsIMutI CAGTG 3 cut(s) 31, 626, 630
BveI ACCTGC 1 cut(s) 201
Cfr10I RCCGGY 1 cut(s) 415
Cfr13I GGNCC 2 cut(s) 575, 593
DdeI CTNAG 3 cut(s) 162, 500, 618
DpnI GATC 2 cut(s) 329, 453
DpnII GATC 2 cut(s) 327, 451
DrdI GACNNNNNNGTC 1 cut(s) 380
DseDI GACNNNNNNGTC 1 cut(s) 380
Eco130I CCWWGG 1 cut(s) 361
Eco32I GATATC 1 cut(s) 187
Eco47I GGWCC 2 cut(s) 575, 593
EcoRV GATATC 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 361
FaiI YATR 4 cut(s) 143, 306, 438, 566
FaqI GGGAC 1 cut(s) 628
FbaI TGATCA 2 cut(s) 327, 451
FspBI CTAG 1 cut(s) 606
GsaI CCCAGC 1 cut(s) 465
HaeIII GGCC 1 cut(s) 321
HapII CCGG 3 cut(s) 207, 416, 528
HinfI GANTC 3 cut(s) 259, 478, 616
HpaII CCGG 3 cut(s) 207, 416, 528
HphI GGTGA 2 cut(s) 97, 235
Hpy166II GTNNAC 3 cut(s) 337, 544, 596
Hpy188I TCNGA 3 cut(s) 456, 494, 638
Hpy188III TCNNGA 4 cut(s) 16, 207, 385, 449
Hpy8I GTNNAC 3 cut(s) 337, 544, 596
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 2 cut(s) 502, 588
HpyCH4III ACNGT 3 cut(s) 35, 334, 634
HpyCH4IV ACGT 1 cut(s) 546
HpyF10VI GCNNNNNNNGC 1 cut(s) 566
HpyF3I CTNAG 3 cut(s) 162, 500, 618
HpySE526I ACGT 1 cut(s) 546
Kpn2I TCCGGA 1 cut(s) 206
Ksp22I TGATCA 2 cut(s) 327, 451
Kzo9I GATC 2 cut(s) 327, 451
LmnI GCTCC 1 cut(s) 427
LpnPI CCDG 8 cut(s) 206, 220, 429, 447, 455, 541, 576, 596
MaeI CTAG 1 cut(s) 606
MaeII ACGT 1 cut(s) 546
MalI GATC 2 cut(s) 329, 453
MboI GATC 2 cut(s) 327, 451
MboII GAAGA 1 cut(s) 383
MhlI GDGCHC 1 cut(s) 492
MluCI AATT 1 cut(s) 57
MlyI GAGTC 1 cut(s) 610
MmeI TCCRAC 1 cut(s) 262
MnlI CCTC 9 cut(s) 23, 125, 171, 212, 230, 233, 241, 360, 436
MroI TCCGGA 1 cut(s) 206
MroXI GAANNNNTTC 1 cut(s) 80
MseI TTAA 2 cut(s) 60, 122
MspI CCGG 3 cut(s) 207, 416, 528
MspR9I CCNGG 1 cut(s) 529
MwoI GCNNNNNNNGC 1 cut(s) 566
NciI CCSGG 1 cut(s) 529
NdeII GATC 2 cut(s) 327, 451
NlaIV GGNNCC 2 cut(s) 211, 423
PcsI WCGNNNNNNNCGW 1 cut(s) 552
PdmI GAANNNNTTC 1 cut(s) 80
PfeI GAWTC 2 cut(s) 259, 478
PfoI TCCNGGA 1 cut(s) 527
PleI GAGTC 1 cut(s) 610
PpsI GAGTC 1 cut(s) 610
PspFI CCCAGC 1 cut(s) 461
PspN4I GGNNCC 2 cut(s) 211, 423
PspPI GGNCC 2 cut(s) 575, 593
SaqAI TTAA 2 cut(s) 60, 122
Sau3AI GATC 2 cut(s) 327, 451
Sau96I GGNCC 2 cut(s) 575, 593
SchI GAGTC 1 cut(s) 610
ScrFI CCNGG 1 cut(s) 529
SduI GDGCHC 1 cut(s) 492
SinI GGWCC 2 cut(s) 575, 593
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
Sse9I AATT 1 cut(s) 57
SspI AATATT 1 cut(s) 126
SspMI CTAG 1 cut(s) 606
StyD4I CCNGG 1 cut(s) 527
StyI CCWWGG 1 cut(s) 361
TaaI ACNGT 3 cut(s) 35, 334, 634
TaiI ACGT 1 cut(s) 549
TaqII GACCGA 1 cut(s) 563
TasI AATT 1 cut(s) 57
TfiI GAWTC 2 cut(s) 259, 478
Tru1I TTAA 2 cut(s) 60, 122
Tru9I TTAA 2 cut(s) 60, 122
TscAI CASTG 3 cut(s) 38, 626, 637
TspDTI ATGAA 1 cut(s) 453
TspGWI ACGGA 2 cut(s) 63, 223
TspRI CASTG 3 cut(s) 38, 626, 637
VpaK11BI GGWCC 2 cut(s) 575, 593
XmnI GAANNNNTTC 1 cut(s) 80
XspI CTAG 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.