Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014278

Physical Location & Seq

Genomic Coordinates Forward (+)

22171166 .. 22173019

Gene Structure 1854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G54580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCGATGGCTATGAGACTTCCAGCGATATCTAGAGCTGTGACGGAAGTAGCTTCAGCTCCGGTTGGTTTGAGACGACTGTTCTGTTCAAATGCTTCAAGGTTCTCTTTTTTGTCTCCACAAGCTGAATCCCAAACACCGGCTCGTCCTCAGGCTGAACCTAGCACCAATCTCTTCGTCTCCGGGCTTAGTAAGCGCACCACTTCTGAAGGACTAAGGACTGCTTTTGCTCAGTTTGGAGAAGTTGCTGATGCTAAGGTTGTCACAGACAGAGTATCAGGATATTCCAAAGGGTTTGGATTTGTTAGATATGCCACTTTAGAAGATTCTGCCAAAGGCATAGCTGGAATGGACGGGAAGTTTCTTGACGGTTGGGTCATATTCGCAGAGTATGCAAGACCGAGAGAGCAATCACAGTCATATCAACCTCAGAACAACATGTCTCGTCCTCCATACTATGGTAACCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:1900864 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

156

Amino Acids

17.09

Weight (kDa)

9.77

Isoelectric Point (pI)

56.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	58 - 124	8.3e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54580
fragaria_vesca	FvH4_3g21540
malus_domestica	MD03G1215200.v1.1 MD11G1229900.v1.1
prunus_persica	Prupe.4G197600_v2.0.a1
pyrus_communis	pycom03g16370 pycom11g20360
rosa_chinensis	RchiOBHm_Chr5g0036991
rosa_laevigata	RLG00000033741
rosa_multiflora	Rmu_sc0013351.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043980
rosa_rugosa	Rorug05G0159600
rosa_samantha	Rh5AG251700 Rh5BG253200 Rh5CG285900 Rh5DG261800
rosa_wichuraiana	Rw5G023180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	374
AccB7I	CCANNNNNTGG	1 cut(s)	458
AciI	CCGC	1 cut(s)	466
AcuI	CTGAAG	2 cut(s)	39, 228
AfiI	CCNNNNNNNGG	2 cut(s)	139, 458
AflIII	ACRYGT	1 cut(s)	438
AgsI	TTSAA	2 cut(s)	90, 99
AluBI	AGCT	5 cut(s)	38, 53, 59, 125, 344
AluI	AGCT	5 cut(s)	38, 53, 59, 125, 344
Alw26I	GTCTC	5 cut(s)	10, 67, 120, 184, 447
AspLEI	GCGC	1 cut(s)	198
AsuC2I	CCSGG	1 cut(s)	184
AxyI	CCTNAGG	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	184
BcoDI	GTCTC	5 cut(s)	10, 67, 120, 184, 447
BfaI	CTAG	3 cut(s)	33, 162, 469
Bme1390I	CCNGG	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	241
Bpu10I	CCTNAGC	1 cut(s)	255
BpuMI	CCSGG	1 cut(s)	184
BsaWI	WCCGGW	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 458
Bse118I	RCCGGY	1 cut(s)	139
Bse21I	CCTNAGG	1 cut(s)	150
BseLI	CCNNNNNNNGG	2 cut(s)	139, 458
BseMII	CTCAG	3 cut(s)	164, 245, 443
BsiSI	CCGG	3 cut(s)	62, 140, 183
BslI	CCNNNNNNNGG	2 cut(s)	139, 458
BsmAI	GTCTC	5 cut(s)	10, 67, 120, 184, 447
BsmBI	CGTCTC	2 cut(s)	67, 184
BspACI	CCGC	1 cut(s)	466
BspCNI	CTCAG	3 cut(s)	163, 244, 442
BsrFI	RCCGGY	1 cut(s)	139
BssAI	RCCGGY	1 cut(s)	139
Bst4CI	ACNGT	3 cut(s)	81, 371, 417
Bst6I	CTCTTC	1 cut(s)	179
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstDEI	CTNAG	6 cut(s)	150, 188, 215, 231, 255, 429
BstEII	GGTNACC	1 cut(s)	461
BstHHI	GCGC	1 cut(s)	198
BstMAI	GTCTC	5 cut(s)	10, 67, 120, 184, 447
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 392
BstNSI	RCATGY	1 cut(s)	442
BstPI	GGTNACC	1 cut(s)	461
BstSCI	CCNGG	1 cut(s)	182
Bsu36I	CCTNAGG	1 cut(s)	150
BtgZI	GCGATG	1 cut(s)	20
CfoI	GCGC	1 cut(s)	198
Cfr10I	RCCGGY	1 cut(s)	139
CviAII	CATG	1 cut(s)	439
CviJI	RGCY	9 cut(s)	11, 38, 53, 59, 125, 143, 155, 187, 344
CviKI_1	RGCY	9 cut(s)	11, 38, 53, 59, 125, 143, 155, 187, 344
DdeI	CTNAG	6 cut(s)	150, 188, 215, 231, 255, 429
DrdI	GACNNNNNNGTC	1 cut(s)	374
DseDI	GACNNNNNNGTC	1 cut(s)	374
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Eco32I	GATATC	1 cut(s)	30
Eco57I	CTGAAG	2 cut(s)	39, 228
Eco81I	CCTNAGG	1 cut(s)	150
Eco91I	GGTNACC	1 cut(s)	461
EcoO65I	GGTNACC	1 cut(s)	461
EcoRV	GATATC	1 cut(s)	30
Esp3I	CGTCTC	2 cut(s)	67, 184
FaeI	CATG	1 cut(s)	442
FaiI	YATR	9 cut(s)	14, 312, 341, 380, 393, 421, 440, 454, 459
FalI	AAGNNNNNCTT	4 cut(s)	91, 123, 208, 240
FatI	CATG	1 cut(s)	438
FspBI	CTAG	3 cut(s)	33, 162, 469
GlaI	GCGC	1 cut(s)	197
HapII	CCGG	3 cut(s)	62, 140, 183
HhaI	GCGC	1 cut(s)	198
Hin1II	CATG	1 cut(s)	442
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HinfI	GANTC	2 cut(s)	128, 326
HpaII	CCGG	3 cut(s)	62, 140, 183
Hpy188I	TCNGA	2 cut(s)	208, 432
Hpy188III	TCNNGA	3 cut(s)	33, 279, 365
HpyAV	CCTTC	1 cut(s)	203
HpyCH4III	ACNGT	3 cut(s)	81, 371, 417
HpyCH4V	TGCA	1 cut(s)	395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 392
HpyF3I	CTNAG	6 cut(s)	150, 188, 215, 231, 255, 429
Hsp92II	CATG	1 cut(s)	442
HspAI	GCGC	1 cut(s)	196
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	7 cut(s)	36, 75, 137, 153, 196, 264, 330
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	3 cut(s)	33, 162, 469
MaeIII	GTNAC	3 cut(s)	40, 262, 461
MboII	GAAGA	2 cut(s)	166, 335
MnlI	CCTC	3 cut(s)	159, 438, 459
MspI	CCGG	3 cut(s)	62, 140, 183
MspR9I	CCNGG	1 cut(s)	184
MwoI	GCNNNNNNNGC	2 cut(s)	193, 392
NciI	CCSGG	1 cut(s)	184
NlaIII	CATG	1 cut(s)	442
NmuCI	GTSAC	2 cut(s)	40, 262
NspI	RCATGY	1 cut(s)	442
PciI	ACATGT	1 cut(s)	438
PfeI	GAWTC	2 cut(s)	128, 326
PflMI	CCANNNNNTGG	1 cut(s)	458
PscI	ACATGT	1 cut(s)	438
PspEI	GGTNACC	1 cut(s)	461
ScrFI	CCNGG	1 cut(s)	184
SetI	ASST	9 cut(s)	40, 55, 61, 104, 127, 163, 261, 346, 430
SfaNI	GCATC	1 cut(s)	241
SsiI	CCGC	1 cut(s)	466
SspMI	CTAG	3 cut(s)	33, 162, 469
StyD4I	CCNGG	1 cut(s)	182
TaaI	ACNGT	3 cut(s)	81, 371, 417
TaqII	GACCGA	1 cut(s)	415
TfiI	GAWTC	2 cut(s)	128, 326
TseFI	GTSAC	2 cut(s)	40, 262
Tsp45I	GTSAC	2 cut(s)	40, 262
TspGWI	ACGGA	1 cut(s)	59
Van91I	CCANNNNNTGG	1 cut(s)	458
XbaI	TCTAGA	1 cut(s)	32
XceI	RCATGY	1 cut(s)	442
XspI	CTAG	3 cut(s)	33, 162, 469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.