Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0014278

Physical Location & Seq

Genomic Coordinates Forward (+)

31624734 .. 31627445

Gene Structure 2712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033741

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCTTTGACTATGAGAGCTGCGGCGGCGGCGGCAGCGGCGGGGCCCACTCGCGGCTTGAGACGGCTGTTCTCGACTGGCTTCGTTCCTCCGATGAACTCTCCGCCGCCCAATCCTCGAGTAGAGGCCGAACCAAGCACCAACCTCTTCGTCTCCGGGCTTAACAAGCGTACTACCTCAGAAGGACTACATAAAGCCTTTTCTGCGTTTGGTGAAGTAGTTCAAGCCCGAGTGGTGACTGATCGGGTATCAGGATTCTCCAAGGGATTTGGTTTTGTAAGGTATTCAACCTTAGAAGATGCTGCCAAAGGCAAACAAGGCATGGATGGACAGTTTCTGGATGGTTGGGTTATATTTGCTGAATATGCAAGGCCCAGAACAACTACACCACCTCCTGAGAACAATTTGACTCAGTATGGCCGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:1900864 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

143

Amino Acids

15.36

Weight (kDa)

10.07

Isoelectric Point (pI)

33.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	49 - 115	7.9e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54580
fragaria_vesca	FvH4_3g21540
malus_domestica	MD03G1215200.v1.1 MD11G1229900.v1.1
prunus_persica	Prupe.4G197600_v2.0.a1
pyrus_communis	pycom03g16370 pycom11g20360
rosa_chinensis	RchiOBHm_Chr5g0036991
rosa_laevigata	RLG00000033741
rosa_multiflora	Rmu_sc0013351.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043980
rosa_rugosa	Rorug05G0159600
rosa_samantha	Rh5AG251700 Rh5BG253200 Rh5CG285900 Rh5DG261800
rosa_wichuraiana	Rw5G023180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	54
AciI	CCGC	9 cut(s)	23, 26, 29, 32, 38, 41, 54, 104, 107
AcoI	YGGCCR	1 cut(s)	418
AfaI	GTAC	1 cut(s)	172
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	2 cut(s)	224, 288
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
Alw26I	GTCTC	2 cut(s)	55, 157
AlwNI	CAGNNNCTG	1 cut(s)	337
Ama87I	CYCGRG	2 cut(s)	117, 228
AoxI	GGCC	4 cut(s)	44, 126, 371, 418
ApaI	GGGCCC	1 cut(s)	48
ApeKI	GCWGC	3 cut(s)	20, 35, 302
Asp700I	GAANNNNTTC	1 cut(s)	219
AspS9I	GGNCC	3 cut(s)	44, 45, 372
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	2 cut(s)	224, 247
AvaI	CYCGRG	2 cut(s)	117, 228
BaeGI	GKGCMC	1 cut(s)	48
BanII	GRGCYC	1 cut(s)	48
BbvI	GCAGC	3 cut(s)	7, 47, 289
BccI	CCATC	2 cut(s)	320, 335
BceAI	ACGGC	2 cut(s)	80, 405
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	2 cut(s)	55, 157
Bme1390I	CCNGG	1 cut(s)	157
BmeT110I	CYCGRG	2 cut(s)	117, 228
BmgT120I	GGNCC	3 cut(s)	44, 45, 372
BmiI	GGNNCC	2 cut(s)	45, 46
BmrFI	CCNGG	1 cut(s)	157
BmsI	GCATC	1 cut(s)	289
BpuEI	CTTGAG	1 cut(s)	79
BpuMI	CCSGG	1 cut(s)	157
BsaJI	CCNNGG	1 cut(s)	261
BsaXI	ACNNNNNCTCC	2 cut(s)	376, 406
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	82
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	2 cut(s)	331, 346
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMII	CTCAG	3 cut(s)	192, 387, 425
BseNI	ACTGG	1 cut(s)	82
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	3 cut(s)	7, 47, 289
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	4 cut(s)	46, 128, 373, 420
BsiHKCI	CYCGRG	2 cut(s)	117, 228
BsiSI	CCGG	1 cut(s)	156
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	2 cut(s)	55, 157
BsmBI	CGTCTC	2 cut(s)	55, 157
BsnI	GGCC	4 cut(s)	46, 128, 373, 420
BsoBI	CYCGRG	2 cut(s)	117, 228
Bsp120I	GGGCCC	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	241
BspACI	CCGC	9 cut(s)	23, 26, 29, 32, 38, 41, 54, 104, 107
BspANI	GGCC	4 cut(s)	46, 128, 373, 420
BspCNI	CTCAG	3 cut(s)	191, 388, 424
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	2 cut(s)	45, 46
BsrI	ACTGG	1 cut(s)	82
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	1 cut(s)	241
BssT1I	CCWWGG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	333
Bst6I	CTCTTC	1 cut(s)	152
BstDEI	CTNAG	4 cut(s)	178, 292, 396, 411
BstF5I	GGATG	2 cut(s)	331, 346
BstFNI	CGCG	1 cut(s)	54
BstKTI	GATC	1 cut(s)	244
BstMAI	GTCTC	2 cut(s)	55, 157
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	9 cut(s)	26, 29, 32, 35, 38, 166, 203, 318, 365
BstSCI	CCNGG	1 cut(s)	155
BstSLI	GKGCMC	1 cut(s)	48
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	3 cut(s)	7, 47, 289
BsuRI	GGCC	4 cut(s)	46, 128, 373, 420
BtsCI	GGATG	2 cut(s)	331, 346
CaiI	CAGNNNCTG	1 cut(s)	337
Cfr13I	GGNCC	3 cut(s)	44, 45, 372
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	1 cut(s)	322
CviQI	GTAC	1 cut(s)	171
DdeI	CTNAG	4 cut(s)	178, 292, 396, 411
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
EaeI	YGGCCR	1 cut(s)	418
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
EciI	GGCGGA	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	261
Eco24I	GRGCYC	1 cut(s)	48
Eco88I	CYCGRG	2 cut(s)	117, 228
EcoO109I	RGGNCCY	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	261
EcoT38I	GRGCYC	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	261
Esp3I	CGTCTC	2 cut(s)	55, 157
FaeI	CATG	1 cut(s)	325
FaiI	YATR	6 cut(s)	14, 192, 323, 353, 366, 417
FatI	CATG	1 cut(s)	321
FauI	CCCGC	1 cut(s)	34
FokI	GGATG	2 cut(s)	338, 353
FriOI	GRGCYC	1 cut(s)	48
HaeIII	GGCC	4 cut(s)	46, 128, 373, 420
HapII	CCGG	1 cut(s)	156
Hin1II	CATG	1 cut(s)	325
HinfI	GANTC	2 cut(s)	255, 409
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	2 cut(s)	224, 247
Hpy188I	TCNGA	2 cut(s)	93, 181
Hpy188III	TCNNGA	4 cut(s)	73, 252, 338, 395
HpyAV	CCTTC	1 cut(s)	176
HpyCH4III	ACNGT	1 cut(s)	333
HpyCH4V	TGCA	1 cut(s)	368
HpyF10VI	GCNNNNNNNGC	9 cut(s)	26, 29, 32, 35, 38, 166, 203, 318, 365
HpyF3I	CTNAG	4 cut(s)	178, 292, 396, 411
Hsp92II	CATG	1 cut(s)	325
Kzo9I	GATC	1 cut(s)	241
LpnPI	CCDG	6 cut(s)	63, 169, 237, 323, 388, 408
Lsp1109I	GCAGC	3 cut(s)	7, 47, 289
LweI	GCATC	1 cut(s)	289
MaeIII	GTNAC	2 cut(s)	235, 422
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MboII	GAAGA	2 cut(s)	139, 308
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	1 cut(s)	403
MlyI	GAGTC	1 cut(s)	403
MnlI	CCTC	6 cut(s)	99, 118, 126, 155, 187, 402
MroXI	GAANNNNTTC	1 cut(s)	219
MseI	TTAA	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	38
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	157
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	9 cut(s)	26, 29, 32, 35, 38, 166, 203, 318, 365
NciI	CCSGG	1 cut(s)	157
NdeII	GATC	1 cut(s)	241
NlaIII	CATG	1 cut(s)	325
NlaIV	GGNNCC	2 cut(s)	45, 46
NmuCI	GTSAC	1 cut(s)	235
PaeR7I	CTCGAG	1 cut(s)	117
PdmI	GAANNNNTTC	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	255
PleI	GAGTC	1 cut(s)	403
PpsI	GAGTC	1 cut(s)	403
PspN4I	GGNNCC	2 cut(s)	45, 46
PspOMI	GGGCCC	1 cut(s)	44
PspPI	GGNCC	3 cut(s)	44, 45, 372
PspXI	VCTCGAGB	1 cut(s)	117
PstNI	CAGNNNCTG	1 cut(s)	337
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	162
Sau3AI	GATC	1 cut(s)	241
Sau96I	GGNCC	3 cut(s)	44, 45, 372
SchI	GAGTC	1 cut(s)	403
ScrFI	CCNGG	1 cut(s)	157
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	6 cut(s)	22, 147, 179, 284, 293, 394
SfaNI	GCATC	1 cut(s)	289
Sfr274I	CTCGAG	1 cut(s)	117
SlaI	CTCGAG	1 cut(s)	117
SmlI	CTYRAG	2 cut(s)	58, 117
SmoI	CTYRAG	2 cut(s)	58, 117
Sse9I	AATT	1 cut(s)	403
SsiI	CCGC	9 cut(s)	23, 26, 29, 32, 38, 41, 54, 104, 107
StyD4I	CCNGG	1 cut(s)	155
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	1 cut(s)	333
TaqI	TCGA	2 cut(s)	74, 118
TasI	AATT	1 cut(s)	403
TauI	GCSGC	7 cut(s)	26, 29, 32, 35, 41, 57, 109
TfiI	GAWTC	1 cut(s)	255
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	3 cut(s)	20, 35, 302
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	1 cut(s)	110
XhoI	CTCGAG	1 cut(s)	117
XmnI	GAANNNNTTC	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.