Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0014278

Physical Location & Seq

Genomic Coordinates Reverse (-)

17534655 .. 17537530

Gene Structure 2876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g16370.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCTTTGACACTGCGAGCAGCGGCGGCGGTGGCCGCCGGTTCCACTCGTGGCTTGGGGCGGCTCTTCTCAACAAGTTTCATTCCCTCAATGAACTCTGCAACGCCTTCGGCTCGAGAGCAGGCTGAGCCGAGCACCAACCTCTTCGTCTCCGGGCTCAGCAAACGTACTACTACAGAAAAATTACACGAAGCCTTTTCTCAGTTTGGTGAAGTAGTTCATGCTAGGGTGGTAACTGATCGAGTATCAGGATATTCCAAGGGGTTTGGTTTTGTAAAGTATGCTACCCTAGAAGATGCTGCCAAAGGCATAGAAGGGATGGATGGAAAGTTTCTTGATGGTTGGGTCATATTTGCTGAATACGCAAGACCCAGACAGCCAACTCCACCACCTCAGAACAATATGGCTTCACCATATAGCCGTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:1900864 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

143

Amino Acids

15.36

Weight (kDa)

9.57

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54580
fragaria_vesca	FvH4_3g21540
malus_domestica	MD03G1215200.v1.1 MD11G1229900.v1.1
prunus_persica	Prupe.4G197600_v2.0.a1
pyrus_communis	pycom03g16370 pycom11g20360
rosa_chinensis	RchiOBHm_Chr5g0036991
rosa_laevigata	RLG00000033741
rosa_multiflora	Rmu_sc0013351.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043980
rosa_rugosa	Rorug05G0159600
rosa_samantha	Rh5AG251700 Rh5BG253200 Rh5CG285900 Rh5DG261800
rosa_wichuraiana	Rw5G023180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	23, 26, 29, 36, 61
AcoI	YGGCCR	1 cut(s)	33
AfaI	GTAC	1 cut(s)	169
Alw21I	GWGCWC	1 cut(s)	137
Alw26I	GTCTC	1 cut(s)	154
Ama87I	CYCGRG	1 cut(s)	114
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	2 cut(s)	20, 299
Asp700I	GAANNNNTTC	1 cut(s)	216
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	2 cut(s)	221, 402
AvaI	CYCGRG	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	159
BauI	CACGAG	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	137
BbvI	GCAGC	2 cut(s)	32, 286
BccI	CCATC	3 cut(s)	313, 317, 332
BceAI	ACGGC	1 cut(s)	405
BcgI	CGANNNNNNTGC	2 cut(s)	90, 124
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	2 cut(s)	225, 290
BfmI	CTRYAG	1 cut(s)	174
BisI	GCNGC	6 cut(s)	21, 24, 27, 36, 62, 300
BlpI	GCTNAGC	2 cut(s)	126, 158
BlsI	GCNGC	6 cut(s)	22, 25, 28, 37, 63, 301
Bme1390I	CCNGG	1 cut(s)	154
BmeT110I	CYCGRG	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	286
Bpu1102I	GCTNAGC	2 cut(s)	126, 158
BpuMI	CCSGG	1 cut(s)	154
BsaJI	CCNNGG	1 cut(s)	258
Bse118I	RCCGGY	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	2 cut(s)	324, 328
BseMII	CTCAG	4 cut(s)	117, 172, 215, 407
BseXI	GCAGC	2 cut(s)	32, 286
BshFI	GGCC	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	137
BsiHKCI	CYCGRG	1 cut(s)	114
BsiSI	CCGG	2 cut(s)	39, 153
BsmAI	GTCTC	1 cut(s)	154
BsmBI	CGTCTC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	35
BsoBI	CYCGRG	1 cut(s)	114
Bsp1286I	GDGCHC	2 cut(s)	137, 159
Bsp143I	GATC	1 cut(s)	238
Bsp1720I	GCTNAGC	2 cut(s)	126, 158
BspACI	CCGC	5 cut(s)	23, 26, 29, 36, 61
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	4 cut(s)	118, 171, 214, 406
BspLI	GGNNCC	1 cut(s)	43
BspQI	GCTCTTC	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	38
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	1 cut(s)	238
BssSI	CACGAG	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	258
Bst2BI	CACGAG	1 cut(s)	48
Bst6I	CTCTTC	2 cut(s)	71, 149
BstC8I	GCNNGC	2 cut(s)	18, 123
BstDEI	CTNAG	4 cut(s)	126, 158, 201, 393
BstF5I	GGATG	2 cut(s)	324, 328
BstKTI	GATC	1 cut(s)	241
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 32, 35, 127, 362
BstSCI	CCNGG	1 cut(s)	152
BstSFI	CTRYAG	1 cut(s)	174
BstV1I	GCAGC	2 cut(s)	32, 286
BsuRI	GGCC	1 cut(s)	35
BtsCI	GGATG	2 cut(s)	324, 328
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	1 cut(s)	11
Cac8I	GCNNGC	2 cut(s)	18, 123
Cfr10I	RCCGGY	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	168
CviAII	CATG	1 cut(s)	221
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	4 cut(s)	126, 158, 201, 393
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
EaeI	YGGCCR	1 cut(s)	33
Eam1104I	CTCTTC	2 cut(s)	71, 149
EarI	CTCTTC	2 cut(s)	71, 149
Eco130I	CCWWGG	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	159
Eco88I	CYCGRG	1 cut(s)	114
EcoT14I	CCWWGG	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	258
Esp3I	CGTCTC	1 cut(s)	154
FaeI	CATG	1 cut(s)	224
FaiI	YATR	7 cut(s)	222, 282, 311, 350, 404, 415, 417
FatI	CATG	1 cut(s)	220
Fnu4HI	GCNGC	6 cut(s)	21, 24, 27, 36, 62, 300
FokI	GGATG	2 cut(s)	331, 335
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	6 cut(s)	21, 24, 27, 36, 62, 300
FspBI	CTAG	2 cut(s)	225, 290
GluI	GCNGC	6 cut(s)	21, 24, 27, 36, 62, 300
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	2 cut(s)	39, 153
Hin1II	CATG	1 cut(s)	224
HpaII	CCGG	2 cut(s)	39, 153
HphI	GGTGA	2 cut(s)	221, 402
Hpy188I	TCNGA	1 cut(s)	396
Hpy188III	TCNNGA	3 cut(s)	116, 249, 335
HpyAV	CCTTC	2 cut(s)	117, 308
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 32, 35, 127, 362
HpyF3I	CTNAG	4 cut(s)	126, 158, 201, 393
HpySE526I	ACGT	1 cut(s)	166
Hsp92II	CATG	1 cut(s)	224
Kzo9I	GATC	1 cut(s)	238
LguI	GCTCTTC	1 cut(s)	71
LpnPI	CCDG	5 cut(s)	52, 107, 166, 234, 385
Lsp1109I	GCAGC	2 cut(s)	32, 286
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	2 cut(s)	225, 290
MaeII	ACGT	1 cut(s)	166
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MboII	GAAGA	3 cut(s)	58, 136, 305
MhlI	GDGCHC	2 cut(s)	137, 159
MluCI	AATT	1 cut(s)	182
MnlI	CCTC	3 cut(s)	97, 152, 402
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	1 cut(s)	427
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	2 cut(s)	39, 153
MspR9I	CCNGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	5 cut(s)	26, 32, 35, 127, 362
NciI	CCSGG	1 cut(s)	154
NdeII	GATC	1 cut(s)	238
NlaIII	CATG	1 cut(s)	224
NlaIV	GGNNCC	1 cut(s)	43
NmeAIII	GCCGAG	1 cut(s)	156
PaeR7I	CTCGAG	1 cut(s)	114
PciSI	GCTCTTC	1 cut(s)	71
PdmI	GAANNNNTTC	1 cut(s)	216
PkrI	GCNGC	6 cut(s)	22, 25, 28, 37, 63, 301
PspN4I	GGNNCC	1 cut(s)	43
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
SapI	GCTCTTC	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	427
SatI	GCNGC	6 cut(s)	21, 24, 27, 36, 62, 300
Sau3AI	GATC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	154
SduI	GDGCHC	2 cut(s)	137, 159
SetI	ASST	3 cut(s)	144, 169, 394
SfaNI	GCATC	1 cut(s)	286
SfcI	CTRYAG	1 cut(s)	174
Sfr274I	CTCGAG	1 cut(s)	114
SlaI	CTCGAG	1 cut(s)	114
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
Sse9I	AATT	1 cut(s)	182
SsiI	CCGC	5 cut(s)	23, 26, 29, 36, 61
SspMI	CTAG	2 cut(s)	225, 290
StyD4I	CCNGG	1 cut(s)	152
StyI	CCWWGG	1 cut(s)	258
TaiI	ACGT	1 cut(s)	169
TaqI	TCGA	2 cut(s)	115, 241
TasI	AATT	1 cut(s)	182
TauI	GCSGC	4 cut(s)	26, 29, 38, 64
Tru1I	TTAA	1 cut(s)	427
Tru9I	TTAA	1 cut(s)	427
TscAI	CASTG	1 cut(s)	18
TseI	GCWGC	2 cut(s)	20, 299
TspDTI	ATGAA	3 cut(s)	70, 107, 209
TspRI	CASTG	1 cut(s)	18
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XhoI	CTCGAG	1 cut(s)	114
XmnI	GAANNNNTTC	1 cut(s)	216
XspI	CTAG	2 cut(s)	225, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.