Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0014278

Physical Location & Seq

Genomic Coordinates Reverse (-)

29558385 .. 29562038

Gene Structure 3654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1215200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCTTTGACACTGAGAGCAGCGGCGGCCGCCGCCGCCGGTTCCACTCGTGGCTTGGGGCGGCTCTTCTCAACCAGTTTCATTCCCCCAATGAACTCTGCAACGCCTTCGGCTCGAGAGCAGGCTGAGCCGAGCACGAACCTCTTCGTCTCCGGGCTCAGCAAACGTACTACTACAGAAAAATTACACGAAACCTTTTCTCAGTTTGGTGAAGTAGTTCATGCTAGAGTGGTAACTGATCGAGTATCAGGATATTCCAAGGGGTTTGGTTTTGTAAAGTATGCTACCCTAGAAGATGCTGCCAAAGGCATAGAAGGGATGGATGGAAAGTTTCTTGATGGTTGGGTCATATTTGCTGAATACGCAAGACCCAGACAGCCAACTCCACCACCTCAGAACAATATGGCTTCACCATATAGCCGTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:1900864 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

143

Amino Acids

15.37

Weight (kDa)

9.57

Isoelectric Point (pI)

36.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	48 - 114	6.1e-20	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54580
fragaria_vesca	FvH4_3g21540
malus_domestica	MD03G1215200.v1.1 MD11G1229900.v1.1
prunus_persica	Prupe.4G197600_v2.0.a1
pyrus_communis	pycom03g16370 pycom11g20360
rosa_chinensis	RchiOBHm_Chr5g0036991
rosa_laevigata	RLG00000033741
rosa_multiflora	Rmu_sc0013351.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043980
rosa_rugosa	Rorug05G0159600
rosa_samantha	Rh5AG251700 Rh5BG253200 Rh5CG285900 Rh5DG261800
rosa_wichuraiana	Rw5G023180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	23, 26, 30, 33, 36, 61
AcoI	YGGCCR	1 cut(s)	27
AfaI	GTAC	1 cut(s)	169
Alw21I	GWGCWC	1 cut(s)	137
Alw26I	GTCTC	1 cut(s)	154
Ama87I	CYCGRG	1 cut(s)	114
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	2 cut(s)	20, 299
Asp700I	GAANNNNTTC	2 cut(s)	143, 216
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	2 cut(s)	221, 402
AvaI	CYCGRG	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	159
BauI	CACGAG	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	137
BbvI	GCAGC	2 cut(s)	32, 286
BccI	CCATC	3 cut(s)	313, 317, 332
BceAI	ACGGC	1 cut(s)	405
BcgI	CGANNNNNNTGC	2 cut(s)	90, 124
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	2 cut(s)	225, 290
BfmI	CTRYAG	1 cut(s)	174
BisI	GCNGC	8 cut(s)	21, 24, 27, 30, 33, 36, 62, 300
BlpI	GCTNAGC	2 cut(s)	126, 158
BlsI	GCNGC	8 cut(s)	22, 25, 28, 31, 34, 37, 63, 301
Bme1390I	CCNGG	1 cut(s)	154
BmeT110I	CYCGRG	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	286
Bpu1102I	GCTNAGC	2 cut(s)	126, 158
BpuMI	CCSGG	1 cut(s)	154
BsaJI	CCNNGG	1 cut(s)	258
Bse118I	RCCGGY	1 cut(s)	38
Bse1I	ACTGG	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	2 cut(s)	324, 328
BseMII	CTCAG	5 cut(s)	5, 117, 172, 215, 407
BseNI	ACTGG	1 cut(s)	75
BseX3I	CGGCCG	1 cut(s)	27
BseXI	GCAGC	2 cut(s)	32, 286
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	29
BsiEI	CGRYCG	1 cut(s)	30
BsiHKAI	GWGCWC	1 cut(s)	137
BsiHKCI	CYCGRG	1 cut(s)	114
BsiSI	CCGG	2 cut(s)	39, 153
BsmAI	GTCTC	1 cut(s)	154
BsmBI	CGTCTC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	29
BsoBI	CYCGRG	1 cut(s)	114
Bsp1286I	GDGCHC	2 cut(s)	137, 159
Bsp143I	GATC	1 cut(s)	238
Bsp1720I	GCTNAGC	2 cut(s)	126, 158
BspACI	CCGC	6 cut(s)	23, 26, 30, 33, 36, 61
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	5 cut(s)	6, 118, 171, 214, 406
BspLI	GGNNCC	1 cut(s)	43
BspQI	GCTCTTC	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	75
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	1 cut(s)	238
BssSI	CACGAG	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	258
Bst2BI	CACGAG	1 cut(s)	48
Bst6I	CTCTTC	2 cut(s)	71, 149
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	5 cut(s)	14, 126, 158, 201, 393
BstF5I	GGATG	2 cut(s)	324, 328
BstKTI	GATC	1 cut(s)	241
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	238
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	6 cut(s)	26, 29, 32, 35, 127, 362
BstSCI	CCNGG	1 cut(s)	152
BstSFI	CTRYAG	1 cut(s)	174
BstV1I	GCAGC	2 cut(s)	32, 286
BstZI	CGGCCG	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	29
BtsCI	GGATG	2 cut(s)	324, 328
BtsIMutI	CAGTG	1 cut(s)	11
Cac8I	GCNNGC	1 cut(s)	123
CciNI	GCGGCCGC	1 cut(s)	27
Cfr10I	RCCGGY	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	168
CviAII	CATG	1 cut(s)	221
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	5 cut(s)	14, 126, 158, 201, 393
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
EaeI	YGGCCR	1 cut(s)	27
EagI	CGGCCG	1 cut(s)	27
Eam1104I	CTCTTC	2 cut(s)	71, 149
EarI	CTCTTC	2 cut(s)	71, 149
EclXI	CGGCCG	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	159
Eco52I	CGGCCG	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	114
EcoT14I	CCWWGG	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	258
Esp3I	CGTCTC	1 cut(s)	154
FaeI	CATG	1 cut(s)	224
FaiI	YATR	7 cut(s)	222, 282, 311, 350, 404, 415, 417
FatI	CATG	1 cut(s)	220
Fnu4HI	GCNGC	8 cut(s)	21, 24, 27, 30, 33, 36, 62, 300
FokI	GGATG	2 cut(s)	331, 335
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	8 cut(s)	21, 24, 27, 30, 33, 36, 62, 300
FspBI	CTAG	2 cut(s)	225, 290
GluI	GCNGC	8 cut(s)	21, 24, 27, 30, 33, 36, 62, 300
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	2 cut(s)	39, 153
Hin1II	CATG	1 cut(s)	224
HpaII	CCGG	2 cut(s)	39, 153
HphI	GGTGA	2 cut(s)	221, 402
Hpy188I	TCNGA	1 cut(s)	396
Hpy188III	TCNNGA	3 cut(s)	116, 249, 335
HpyAV	CCTTC	2 cut(s)	117, 308
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	6 cut(s)	26, 29, 32, 35, 127, 362
HpyF3I	CTNAG	5 cut(s)	14, 126, 158, 201, 393
HpySE526I	ACGT	1 cut(s)	166
Hsp92II	CATG	1 cut(s)	224
Kzo9I	GATC	1 cut(s)	238
LguI	GCTCTTC	1 cut(s)	71
LpnPI	CCDG	6 cut(s)	52, 88, 107, 166, 234, 385
Lsp1109I	GCAGC	2 cut(s)	32, 286
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	2 cut(s)	225, 290
MaeII	ACGT	1 cut(s)	166
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MboII	GAAGA	3 cut(s)	58, 136, 305
MhlI	GDGCHC	2 cut(s)	137, 159
MluCI	AATT	1 cut(s)	182
MnlI	CCTC	2 cut(s)	152, 402
MroXI	GAANNNNTTC	2 cut(s)	143, 216
MseI	TTAA	1 cut(s)	427
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	2 cut(s)	39, 153
MspR9I	CCNGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	6 cut(s)	26, 29, 32, 35, 127, 362
NciI	CCSGG	1 cut(s)	154
NdeII	GATC	1 cut(s)	238
NlaIII	CATG	1 cut(s)	224
NlaIV	GGNNCC	1 cut(s)	43
NmeAIII	GCCGAG	1 cut(s)	156
NotI	GCGGCCGC	1 cut(s)	27
PaeR7I	CTCGAG	1 cut(s)	114
PciSI	GCTCTTC	1 cut(s)	71
PdmI	GAANNNNTTC	2 cut(s)	143, 216
PkrI	GCNGC	8 cut(s)	22, 25, 28, 31, 34, 37, 63, 301
PspN4I	GGNNCC	1 cut(s)	43
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
SapI	GCTCTTC	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	427
SatI	GCNGC	8 cut(s)	21, 24, 27, 30, 33, 36, 62, 300
Sau3AI	GATC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	154
SduI	GDGCHC	2 cut(s)	137, 159
SetI	ASST	4 cut(s)	144, 169, 197, 394
SfaNI	GCATC	1 cut(s)	286
SfcI	CTRYAG	1 cut(s)	174
Sfr274I	CTCGAG	1 cut(s)	114
SlaI	CTCGAG	1 cut(s)	114
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
Sse9I	AATT	1 cut(s)	182
SsiI	CCGC	6 cut(s)	23, 26, 30, 33, 36, 61
SspMI	CTAG	2 cut(s)	225, 290
StyD4I	CCNGG	1 cut(s)	152
StyI	CCWWGG	1 cut(s)	258
TaiI	ACGT	1 cut(s)	169
TaqI	TCGA	2 cut(s)	115, 241
TasI	AATT	1 cut(s)	182
TauI	GCSGC	6 cut(s)	26, 29, 32, 35, 38, 64
Tru1I	TTAA	1 cut(s)	427
Tru9I	TTAA	1 cut(s)	427
TscAI	CASTG	1 cut(s)	18
TseI	GCWGC	2 cut(s)	20, 299
TspDTI	ATGAA	3 cut(s)	70, 107, 209
TspRI	CASTG	1 cut(s)	18
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XhoI	CTCGAG	1 cut(s)	114
XmnI	GAANNNNTTC	2 cut(s)	143, 216
XspI	CTAG	2 cut(s)	225, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.