Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013351.1

Orthogroup ID

OG0014278

Physical Location & Seq

Genomic Coordinates Reverse (-)

4096 .. 7037

Gene Structure 2942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013351.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atggctttgactatgagagcggcggcagcggcagcagcggcggcgggggggcccactcgcggcttgagacggctgttctcgactggcttcgttcctccgatgaactctccgccgcctaatcctcgagtagaggccgaaccaagcaccaacctcttcgtctccgggcttaacaagcgtactacctcagaaggactacataaagccttttctgcatttggtgaagtagttcaagctcgagtggtgactgatcgggtatcaggattctccaagggatttggttttgtaaggtattcaaccttagaagatgctgccaaaggcaaacaaggcatggatggacagtttctggatggttgggttatatttgctgaatatgcaaggcccagaacaactacaccacctcctgagaacaatgcaactcagtatggccgttactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:1900864 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

144

Amino Acids

15.45

Weight (kDa)

10.07

Isoelectric Point (pI)

33.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54580
fragaria_vesca	FvH4_3g21540
malus_domestica	MD03G1215200.v1.1 MD11G1229900.v1.1
prunus_persica	Prupe.4G197600_v2.0.a1
pyrus_communis	pycom03g16370 pycom11g20360
rosa_chinensis	RchiOBHm_Chr5g0036991
rosa_laevigata	RLG00000033741
rosa_multiflora	Rmu_sc0013351.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043980
rosa_rugosa	Rorug05G0159600
rosa_samantha	Rh5AG251700 Rh5BG253200 Rh5CG285900 Rh5DG261800
rosa_wichuraiana	Rw5G023180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	20
AccII	CGCG	1 cut(s)	60
AciI	CCGC	9 cut(s)	20, 23, 29, 38, 41, 44, 60, 110, 113
AcoI	YGGCCR	1 cut(s)	424
AfaI	GTAC	1 cut(s)	178
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	2 cut(s)	230, 294
AluBI	AGCT	1 cut(s)	233
AluI	AGCT	1 cut(s)	233
Alw26I	GTCTC	2 cut(s)	61, 163
AlwNI	CAGNNNCTG	1 cut(s)	343
Ama87I	CYCGRG	2 cut(s)	123, 234
AoxI	GGCC	4 cut(s)	50, 132, 377, 424
ApaI	GGGCCC	1 cut(s)	54
ApeKI	GCWGC	4 cut(s)	26, 32, 35, 308
Asp700I	GAANNNNTTC	1 cut(s)	225
AspS9I	GGNCC	3 cut(s)	50, 51, 378
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	2 cut(s)	230, 253
AvaI	CYCGRG	2 cut(s)	123, 234
BaeGI	GKGCMC	1 cut(s)	54
BanII	GRGCYC	1 cut(s)	54
BbvI	GCAGC	4 cut(s)	38, 44, 47, 295
BccI	CCATC	2 cut(s)	326, 341
BceAI	ACGGC	2 cut(s)	86, 411
BcnI	CCSGG	1 cut(s)	163
BcoDI	GTCTC	2 cut(s)	61, 163
Bme1390I	CCNGG	1 cut(s)	163
BmeT110I	CYCGRG	2 cut(s)	123, 234
BmgT120I	GGNCC	3 cut(s)	50, 51, 378
BmiI	GGNNCC	2 cut(s)	51, 52
BmrFI	CCNGG	1 cut(s)	163
BmsI	GCATC	1 cut(s)	295
BpuEI	CTTGAG	1 cut(s)	85
BpuMI	CCSGG	1 cut(s)	163
BsaJI	CCNNGG	1 cut(s)	267
BsaXI	ACNNNNNCTCC	2 cut(s)	382, 412
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse1I	ACTGG	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	2 cut(s)	337, 352
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	3 cut(s)	198, 393, 431
BseNI	ACTGG	1 cut(s)	88
BseSI	GKGCMC	1 cut(s)	54
BseXI	GCAGC	4 cut(s)	38, 44, 47, 295
Bsh1236I	CGCG	1 cut(s)	60
BshFI	GGCC	4 cut(s)	52, 134, 379, 426
BsiHKCI	CYCGRG	2 cut(s)	123, 234
BsiSI	CCGG	1 cut(s)	162
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmAI	GTCTC	2 cut(s)	61, 163
BsmBI	CGTCTC	2 cut(s)	61, 163
BsnI	GGCC	4 cut(s)	52, 134, 379, 426
BsoBI	CYCGRG	2 cut(s)	123, 234
Bsp120I	GGGCCC	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	1 cut(s)	247
BspACI	CCGC	9 cut(s)	20, 23, 29, 38, 41, 44, 60, 110, 113
BspANI	GGCC	4 cut(s)	52, 134, 379, 426
BspCNI	CTCAG	3 cut(s)	197, 394, 430
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	2 cut(s)	51, 52
BsrBI	CCGCTC	1 cut(s)	20
BsrI	ACTGG	1 cut(s)	88
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	1 cut(s)	247
BssT1I	CCWWGG	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	339
Bst6I	CTCTTC	1 cut(s)	158
BstDEI	CTNAG	4 cut(s)	184, 298, 402, 417
BstF5I	GGATG	2 cut(s)	337, 352
BstFNI	CGCG	1 cut(s)	60
BstKTI	GATC	1 cut(s)	250
BstMAI	GTCTC	2 cut(s)	61, 163
BstMBI	GATC	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	161
BstSLI	GKGCMC	1 cut(s)	54
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	4 cut(s)	38, 44, 47, 295
BsuRI	GGCC	4 cut(s)	52, 134, 379, 426
BtsCI	GGATG	2 cut(s)	337, 352
CaiI	CAGNNNCTG	1 cut(s)	343
Cfr13I	GGNCC	3 cut(s)	50, 51, 378
Csp6I	GTAC	1 cut(s)	177
CviAII	CATG	1 cut(s)	328
CviQI	GTAC	1 cut(s)	177
DdeI	CTNAG	4 cut(s)	184, 298, 402, 417
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
EaeI	YGGCCR	1 cut(s)	424
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
EciI	GGCGGA	1 cut(s)	99
Eco130I	CCWWGG	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	54
Eco88I	CYCGRG	2 cut(s)	123, 234
EcoO109I	RGGNCCY	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	267
Esp3I	CGTCTC	2 cut(s)	61, 163
FaeI	CATG	1 cut(s)	331
FaiI	YATR	6 cut(s)	14, 198, 329, 359, 372, 423
FatI	CATG	1 cut(s)	327
FauI	CCCGC	1 cut(s)	37
FokI	GGATG	2 cut(s)	344, 359
FriOI	GRGCYC	1 cut(s)	54
HaeIII	GGCC	4 cut(s)	52, 134, 379, 426
HapII	CCGG	1 cut(s)	162
Hin1II	CATG	1 cut(s)	331
HinfI	GANTC	1 cut(s)	261
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	2 cut(s)	230, 253
Hpy188I	TCNGA	2 cut(s)	99, 187
Hpy188III	TCNNGA	4 cut(s)	79, 258, 344, 401
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	1 cut(s)	339
HpyCH4V	TGCA	3 cut(s)	212, 374, 413
HpyF3I	CTNAG	4 cut(s)	184, 298, 402, 417
Hsp92II	CATG	1 cut(s)	331
Kzo9I	GATC	1 cut(s)	247
LpnPI	CCDG	6 cut(s)	69, 175, 243, 329, 394, 414
Lsp1109I	GCAGC	4 cut(s)	38, 44, 47, 295
LweI	GCATC	1 cut(s)	295
MaeIII	GTNAC	2 cut(s)	241, 428
MalI	GATC	1 cut(s)	249
MbiI	CCGCTC	1 cut(s)	20
MboI	GATC	1 cut(s)	247
MboII	GAAGA	2 cut(s)	145, 314
MhlI	GDGCHC	1 cut(s)	54
MnlI	CCTC	6 cut(s)	105, 124, 132, 161, 193, 408
MroXI	GAANNNNTTC	1 cut(s)	225
MseI	TTAA	1 cut(s)	168
MspA1I	CMGCKG	2 cut(s)	29, 38
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	163
MvnI	CGCG	1 cut(s)	60
NciI	CCSGG	1 cut(s)	163
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	1 cut(s)	331
NlaIV	GGNNCC	2 cut(s)	51, 52
NmuCI	GTSAC	1 cut(s)	241
PaeR7I	CTCGAG	2 cut(s)	123, 234
PdmI	GAANNNNTTC	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	261
PspN4I	GGNNCC	2 cut(s)	51, 52
PspOMI	GGGCCC	1 cut(s)	50
PspPI	GGNCC	3 cut(s)	50, 51, 378
PspXI	VCTCGAGB	2 cut(s)	123, 234
PstNI	CAGNNNCTG	1 cut(s)	343
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	168
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	3 cut(s)	50, 51, 378
ScrFI	CCNGG	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	6 cut(s)	153, 185, 235, 290, 299, 400
SfaNI	GCATC	1 cut(s)	295
Sfr274I	CTCGAG	2 cut(s)	123, 234
SlaI	CTCGAG	2 cut(s)	123, 234
SmlI	CTYRAG	3 cut(s)	64, 123, 234
SmoI	CTYRAG	3 cut(s)	64, 123, 234
SsiI	CCGC	9 cut(s)	20, 23, 29, 38, 41, 44, 60, 110, 113
StyD4I	CCNGG	1 cut(s)	161
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	339
TaqI	TCGA	3 cut(s)	80, 124, 235
TauI	GCSGC	7 cut(s)	23, 26, 32, 41, 44, 63, 115
TfiI	GAWTC	1 cut(s)	261
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	4 cut(s)	26, 32, 35, 308
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	1 cut(s)	116
XhoI	CTCGAG	2 cut(s)	123, 234
XmnI	GAANNNNTTC	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.