Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0014278

Physical Location & Seq

Genomic Coordinates Forward (+)

14638484 .. 14641744

Gene Structure 3261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g21540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCTTTGACTATGAGAGCGGCGGCGGCGGCAGCGGCGGGGCCCACTCGCGGCCTGAGACGGCTGTTCTCGACTAGCTTCGTTCCTCCGATGAACTCTCCGGTGCCTAATCCTCGACAGGAGGCTGAACCAAGCACCAACCTCTTCGTCTCTGGGCTTAACAAGCGTACTACCTCAGAAGGACTACACAAAGCCTTTGCTGCGTTTGGTGAAGTAGTTCAAGCTCGAGTGGTGACTGATCGGGTTTCAGGATTCTCCAAGGGATTTGGTTTCGTAAGGTATGCAACCTTAGAAGATGCTGCCAAAGGCAAACAAGGCATGGATGGACAGTTTCTGGATGGTTGGGTCATATTTGCTGAATATGCAAGGCCTAGAACACCTACTCCACCTCCTGAGAACAATTCAACACAGTATGGCCGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:1900864 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

142

Amino Acids

15.29

Weight (kDa)

10.07

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	48 - 114	1.4e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Orthologous Genes (Group: OG0014278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54580
fragaria_vesca	FvH4_3g21540
malus_domestica	MD03G1215200.v1.1 MD11G1229900.v1.1
prunus_persica	Prupe.4G197600_v2.0.a1
pyrus_communis	pycom03g16370 pycom11g20360
rosa_chinensis	RchiOBHm_Chr5g0036991
rosa_laevigata	RLG00000033741
rosa_multiflora	Rmu_sc0013351.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043980
rosa_rugosa	Rorug05G0159600
rosa_samantha	Rh5AG251700 Rh5BG253200 Rh5CG285900 Rh5DG261800
rosa_wichuraiana	Rw5G023180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	103
AccBSI	CCGCTC	1 cut(s)	20
AccII	CGCG	1 cut(s)	51
AciI	CCGC	7 cut(s)	20, 23, 26, 29, 35, 38, 51
AcoI	YGGCCR	1 cut(s)	415
AfaI	GTAC	1 cut(s)	169
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgsI	TTSAA	2 cut(s)	221, 405
AloI	GAACNNNNNNTCC	2 cut(s)	367, 399
AluBI	AGCT	2 cut(s)	78, 224
AluI	AGCT	2 cut(s)	78, 224
Alw26I	GTCTC	2 cut(s)	52, 154
AlwNI	CAGNNNCTG	1 cut(s)	334
Ama87I	CYCGRG	1 cut(s)	225
AoxI	GGCC	4 cut(s)	41, 52, 368, 415
ApaI	GGGCCC	1 cut(s)	45
ApeKI	GCWGC	3 cut(s)	32, 200, 299
Asp700I	GAANNNNTTC	1 cut(s)	216
AspS9I	GGNCC	2 cut(s)	41, 42
AsuHPI	GGTGA	2 cut(s)	221, 244
AvaI	CYCGRG	1 cut(s)	225
BaeGI	GKGCMC	1 cut(s)	45
BanI	GGYRCC	1 cut(s)	103
BanII	GRGCYC	1 cut(s)	45
BbvI	GCAGC	3 cut(s)	44, 187, 286
BccI	CCATC	2 cut(s)	317, 332
BceAI	ACGGC	2 cut(s)	77, 402
BcoDI	GTCTC	2 cut(s)	52, 154
BfaI	CTAG	2 cut(s)	75, 372
BisI	GCNGC	9 cut(s)	21, 24, 27, 30, 33, 36, 52, 201, 300
BlsI	GCNGC	9 cut(s)	22, 25, 28, 31, 34, 37, 53, 202, 301
BmeT110I	CYCGRG	1 cut(s)	225
BmgT120I	GGNCC	2 cut(s)	41, 42
BmiI	GGNNCC	3 cut(s)	42, 43, 105
BmsI	GCATC	1 cut(s)	286
BsaJI	CCNNGG	1 cut(s)	258
BsaWI	WCCGGW	1 cut(s)	100
BsaXI	ACNNNNNCTCC	4 cut(s)	367, 373, 397, 403
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	2 cut(s)	328, 343
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMII	CTCAG	3 cut(s)	47, 189, 384
BseSI	GKGCMC	1 cut(s)	45
BseXI	GCAGC	3 cut(s)	44, 187, 286
Bsh1236I	CGCG	1 cut(s)	51
BshFI	GGCC	4 cut(s)	43, 54, 370, 417
BshNI	GGYRCC	1 cut(s)	103
BsiHKCI	CYCGRG	1 cut(s)	225
BsiSI	CCGG	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmAI	GTCTC	2 cut(s)	52, 154
BsmBI	CGTCTC	2 cut(s)	52, 154
BsnI	GGCC	4 cut(s)	43, 54, 370, 417
BsoBI	CYCGRG	1 cut(s)	225
Bsp120I	GGGCCC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	238
BspACI	CCGC	7 cut(s)	20, 23, 26, 29, 35, 38, 51
BspANI	GGCC	4 cut(s)	43, 54, 370, 417
BspCNI	CTCAG	3 cut(s)	48, 188, 385
BspFNI	CGCG	1 cut(s)	51
BspLI	GGNNCC	3 cut(s)	42, 43, 105
BspT107I	GGYRCC	1 cut(s)	103
BsrBI	CCGCTC	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	1 cut(s)	238
BssT1I	CCWWGG	1 cut(s)	258
Bst4CI	ACNGT	2 cut(s)	330, 411
Bst6I	CTCTTC	1 cut(s)	149
BstDEI	CTNAG	4 cut(s)	56, 175, 289, 393
BstF5I	GGATG	2 cut(s)	328, 343
BstFNI	CGCG	1 cut(s)	51
BstKTI	GATC	1 cut(s)	241
BstMAI	GTCTC	2 cut(s)	52, 154
BstMBI	GATC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	8 cut(s)	26, 29, 32, 35, 163, 200, 315, 362
BstSLI	GKGCMC	1 cut(s)	45
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	3 cut(s)	44, 187, 286
BsuRI	GGCC	4 cut(s)	43, 54, 370, 417
BtsCI	GGATG	2 cut(s)	328, 343
CaiI	CAGNNNCTG	1 cut(s)	334
Cfr13I	GGNCC	2 cut(s)	41, 42
Csp6I	GTAC	1 cut(s)	168
CviAII	CATG	1 cut(s)	319
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	4 cut(s)	56, 175, 289, 393
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
EaeI	YGGCCR	1 cut(s)	415
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Eco130I	CCWWGG	1 cut(s)	258
Eco147I	AGGCCT	1 cut(s)	370
Eco24I	GRGCYC	1 cut(s)	45
Eco88I	CYCGRG	1 cut(s)	225
EcoO109I	RGGNCCY	1 cut(s)	41
EcoT14I	CCWWGG	1 cut(s)	258
EcoT38I	GRGCYC	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	258
Esp3I	CGTCTC	2 cut(s)	52, 154
FaeI	CATG	1 cut(s)	322
FaiI	YATR	6 cut(s)	14, 282, 320, 350, 363, 414
FatI	CATG	1 cut(s)	318
FauI	CCCGC	1 cut(s)	31
Fnu4HI	GCNGC	9 cut(s)	21, 24, 27, 30, 33, 36, 52, 201, 300
FokI	GGATG	2 cut(s)	335, 350
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	9 cut(s)	21, 24, 27, 30, 33, 36, 52, 201, 300
FspBI	CTAG	2 cut(s)	75, 372
GluI	GCNGC	9 cut(s)	21, 24, 27, 30, 33, 36, 52, 201, 300
HaeIII	GGCC	4 cut(s)	43, 54, 370, 417
HapII	CCGG	1 cut(s)	101
Hin1II	CATG	1 cut(s)	322
HinfI	GANTC	1 cut(s)	252
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	2 cut(s)	221, 244
Hpy188I	TCNGA	2 cut(s)	90, 178
Hpy188III	TCNNGA	4 cut(s)	70, 249, 335, 392
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	2 cut(s)	330, 411
HpyCH4V	TGCA	2 cut(s)	284, 365
HpyF10VI	GCNNNNNNNGC	8 cut(s)	26, 29, 32, 35, 163, 200, 315, 362
HpyF3I	CTNAG	4 cut(s)	56, 175, 289, 393
Hsp92II	CATG	1 cut(s)	322
Kzo9I	GATC	1 cut(s)	238
LpnPI	CCDG	7 cut(s)	68, 104, 114, 138, 234, 320, 405
Lsp1109I	GCAGC	3 cut(s)	44, 187, 286
LweI	GCATC	1 cut(s)	286
MaeI	CTAG	2 cut(s)	75, 372
MaeIII	GTNAC	2 cut(s)	232, 419
MalI	GATC	1 cut(s)	240
MbiI	CCGCTC	1 cut(s)	20
MboI	GATC	1 cut(s)	238
MboII	GAAGA	2 cut(s)	136, 305
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	1 cut(s)	400
MnlI	CCTC	6 cut(s)	96, 115, 123, 152, 184, 399
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	1 cut(s)	159
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	1 cut(s)	101
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	8 cut(s)	26, 29, 32, 35, 163, 200, 315, 362
NdeII	GATC	1 cut(s)	238
NlaIII	CATG	1 cut(s)	322
NlaIV	GGNNCC	3 cut(s)	42, 43, 105
NmuCI	GTSAC	1 cut(s)	232
PaeR7I	CTCGAG	1 cut(s)	225
PceI	AGGCCT	1 cut(s)	370
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	252
PkrI	GCNGC	9 cut(s)	22, 25, 28, 31, 34, 37, 53, 202, 301
PspN4I	GGNNCC	3 cut(s)	42, 43, 105
PspOMI	GGGCCC	1 cut(s)	41
PspPI	GGNCC	2 cut(s)	41, 42
PspXI	VCTCGAGB	1 cut(s)	225
PstNI	CAGNNNCTG	1 cut(s)	334
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	9 cut(s)	21, 24, 27, 30, 33, 36, 52, 201, 300
Sau3AI	GATC	1 cut(s)	238
Sau96I	GGNCC	2 cut(s)	41, 42
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	8 cut(s)	80, 144, 176, 226, 281, 290, 382, 391
SfaNI	GCATC	1 cut(s)	286
Sfr274I	CTCGAG	1 cut(s)	225
SlaI	CTCGAG	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
Sse9I	AATT	1 cut(s)	400
SseBI	AGGCCT	1 cut(s)	370
SsiI	CCGC	7 cut(s)	20, 23, 26, 29, 35, 38, 51
SspMI	CTAG	2 cut(s)	75, 372
StuI	AGGCCT	1 cut(s)	370
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	2 cut(s)	330, 411
TaqI	TCGA	3 cut(s)	71, 115, 226
TasI	AATT	1 cut(s)	400
TauI	GCSGC	6 cut(s)	23, 26, 29, 32, 38, 54
TfiI	GAWTC	1 cut(s)	252
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	3 cut(s)	32, 200, 299
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	1 cut(s)	107
XhoI	CTCGAG	1 cut(s)	225
XmnI	GAANNNNTTC	1 cut(s)	216
XspI	CTAG	2 cut(s)	75, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.