Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0014278

Physical Location & Seq

Genomic Coordinates Forward (+)

32280983 .. 32284244

Gene Structure 3262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG251700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCTTTGACTATGAGAGCGGCGGCAGCGGCAGCGGCAGCGGCGGGGCCCACTCGCGGCTTGAGACGGCTGTTCTCGACTGGCTTCGTTCCTCCGATGAACTCTCCGCCGCCTAATCCTCGAGTAGAGGCCGAACCAAGCACCAACCTCTTCGTCTCCGGGCTTAACAAGCGTACTACCTCAGAAGGACTACATAAAGCCTTTTCTGCATTTGGTGAAGTAGTTCAAGCTCGAGTGGTGACTGATCGGGTATCAGGATTCTCCAAGGGATTTGGTTTTGTAAGGTATTCAACCTTAGAAGATGCTGCCAAAGGCAAACAAGGCATGGATGGACAGTTTCTGGATGGTTGGGTTATATTTGCTGAATATGCAAGGCCCAGAACAACTACACCACCTCCTGAGAACAATTCAACTCAGTATGGCCGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:1900864 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

143

Amino Acids

15.4

Weight (kDa)

10.07

Isoelectric Point (pI)

33.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	50 - 116	8.1e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54580
fragaria_vesca	FvH4_3g21540
malus_domestica	MD03G1215200.v1.1 MD11G1229900.v1.1
prunus_persica	Prupe.4G197600_v2.0.a1
pyrus_communis	pycom03g16370 pycom11g20360
rosa_chinensis	RchiOBHm_Chr5g0036991
rosa_laevigata	RLG00000033741
rosa_multiflora	Rmu_sc0013351.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043980
rosa_rugosa	Rorug05G0159600
rosa_samantha	Rh5AG251700 Rh5BG253200 Rh5CG285900 Rh5DG261800
rosa_wichuraiana	Rw5G023180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	20
AccII	CGCG	1 cut(s)	57
AciI	CCGC	9 cut(s)	20, 23, 29, 35, 41, 44, 57, 107, 110
AcoI	YGGCCR	1 cut(s)	421
AfaI	GTAC	1 cut(s)	175
AfiI	CCNNNNNNNGG	1 cut(s)	56
AgsI	TTSAA	3 cut(s)	227, 291, 411
AluBI	AGCT	1 cut(s)	230
AluI	AGCT	1 cut(s)	230
Alw26I	GTCTC	2 cut(s)	58, 160
AlwNI	CAGNNNCTG	1 cut(s)	340
Ama87I	CYCGRG	2 cut(s)	120, 231
AoxI	GGCC	4 cut(s)	47, 129, 374, 421
ApaI	GGGCCC	1 cut(s)	51
ApeKI	GCWGC	4 cut(s)	26, 32, 38, 305
Asp700I	GAANNNNTTC	1 cut(s)	222
AspS9I	GGNCC	3 cut(s)	47, 48, 375
AsuC2I	CCSGG	1 cut(s)	160
AsuHPI	GGTGA	2 cut(s)	227, 250
AvaI	CYCGRG	2 cut(s)	120, 231
BaeGI	GKGCMC	1 cut(s)	51
BanII	GRGCYC	1 cut(s)	51
BbvI	GCAGC	4 cut(s)	38, 44, 50, 292
BccI	CCATC	2 cut(s)	323, 338
BceAI	ACGGC	2 cut(s)	83, 408
BcnI	CCSGG	1 cut(s)	160
BcoDI	GTCTC	2 cut(s)	58, 160
Bme1390I	CCNGG	1 cut(s)	160
BmeT110I	CYCGRG	2 cut(s)	120, 231
BmgT120I	GGNCC	3 cut(s)	47, 48, 375
BmiI	GGNNCC	2 cut(s)	48, 49
BmrFI	CCNGG	1 cut(s)	160
BmsI	GCATC	1 cut(s)	292
BpuEI	CTTGAG	1 cut(s)	82
BpuMI	CCSGG	1 cut(s)	160
BsaJI	CCNNGG	1 cut(s)	264
BsaXI	ACNNNNNCTCC	2 cut(s)	379, 409
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	85
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	2 cut(s)	334, 349
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseMII	CTCAG	3 cut(s)	195, 390, 428
BseNI	ACTGG	1 cut(s)	85
BseSI	GKGCMC	1 cut(s)	51
BseXI	GCAGC	4 cut(s)	38, 44, 50, 292
Bsh1236I	CGCG	1 cut(s)	57
BshFI	GGCC	4 cut(s)	49, 131, 376, 423
BsiHKCI	CYCGRG	2 cut(s)	120, 231
BsiSI	CCGG	1 cut(s)	159
BslI	CCNNNNNNNGG	1 cut(s)	56
BsmAI	GTCTC	2 cut(s)	58, 160
BsmBI	CGTCTC	2 cut(s)	58, 160
BsnI	GGCC	4 cut(s)	49, 131, 376, 423
BsoBI	CYCGRG	2 cut(s)	120, 231
Bsp120I	GGGCCC	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	1 cut(s)	244
BspACI	CCGC	9 cut(s)	20, 23, 29, 35, 41, 44, 57, 107, 110
BspANI	GGCC	4 cut(s)	49, 131, 376, 423
BspCNI	CTCAG	3 cut(s)	194, 391, 427
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	2 cut(s)	48, 49
BsrBI	CCGCTC	1 cut(s)	20
BsrI	ACTGG	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	1 cut(s)	244
BssT1I	CCWWGG	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	336
Bst6I	CTCTTC	1 cut(s)	155
BstDEI	CTNAG	4 cut(s)	181, 295, 399, 414
BstF5I	GGATG	2 cut(s)	334, 349
BstFNI	CGCG	1 cut(s)	57
BstKTI	GATC	1 cut(s)	247
BstMAI	GTCTC	2 cut(s)	58, 160
BstMBI	GATC	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	158
BstSLI	GKGCMC	1 cut(s)	51
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	4 cut(s)	38, 44, 50, 292
BsuRI	GGCC	4 cut(s)	49, 131, 376, 423
BtsCI	GGATG	2 cut(s)	334, 349
CaiI	CAGNNNCTG	1 cut(s)	340
Cfr13I	GGNCC	3 cut(s)	47, 48, 375
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	1 cut(s)	325
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	4 cut(s)	181, 295, 399, 414
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
EaeI	YGGCCR	1 cut(s)	421
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
EciI	GGCGGA	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	51
Eco88I	CYCGRG	2 cut(s)	120, 231
EcoO109I	RGGNCCY	1 cut(s)	47
EcoT14I	CCWWGG	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	264
Esp3I	CGTCTC	2 cut(s)	58, 160
FaeI	CATG	1 cut(s)	328
FaiI	YATR	6 cut(s)	14, 195, 326, 356, 369, 420
FatI	CATG	1 cut(s)	324
FauI	CCCGC	1 cut(s)	37
FokI	GGATG	2 cut(s)	341, 356
FriOI	GRGCYC	1 cut(s)	51
HaeIII	GGCC	4 cut(s)	49, 131, 376, 423
HapII	CCGG	1 cut(s)	159
Hin1II	CATG	1 cut(s)	328
HinfI	GANTC	1 cut(s)	258
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	2 cut(s)	227, 250
Hpy188I	TCNGA	2 cut(s)	96, 184
Hpy188III	TCNNGA	4 cut(s)	76, 255, 341, 398
HpyAV	CCTTC	1 cut(s)	179
HpyCH4III	ACNGT	1 cut(s)	336
HpyCH4V	TGCA	2 cut(s)	209, 371
HpyF3I	CTNAG	4 cut(s)	181, 295, 399, 414
Hsp92II	CATG	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	244
LpnPI	CCDG	6 cut(s)	66, 172, 240, 326, 391, 411
Lsp1109I	GCAGC	4 cut(s)	38, 44, 50, 292
LweI	GCATC	1 cut(s)	292
MaeIII	GTNAC	2 cut(s)	238, 425
MalI	GATC	1 cut(s)	246
MbiI	CCGCTC	1 cut(s)	20
MboI	GATC	1 cut(s)	244
MboII	GAAGA	2 cut(s)	142, 311
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	1 cut(s)	406
MnlI	CCTC	6 cut(s)	102, 121, 129, 158, 190, 405
MroXI	GAANNNNTTC	1 cut(s)	222
MseI	TTAA	1 cut(s)	165
MspA1I	CMGCKG	3 cut(s)	29, 35, 41
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	160
MvnI	CGCG	1 cut(s)	57
NciI	CCSGG	1 cut(s)	160
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	1 cut(s)	328
NlaIV	GGNNCC	2 cut(s)	48, 49
NmuCI	GTSAC	1 cut(s)	238
PaeR7I	CTCGAG	2 cut(s)	120, 231
PdmI	GAANNNNTTC	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	258
PspN4I	GGNNCC	2 cut(s)	48, 49
PspOMI	GGGCCC	1 cut(s)	47
PspPI	GGNCC	3 cut(s)	47, 48, 375
PspXI	VCTCGAGB	2 cut(s)	120, 231
PstNI	CAGNNNCTG	1 cut(s)	340
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	165
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	3 cut(s)	47, 48, 375
ScrFI	CCNGG	1 cut(s)	160
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	6 cut(s)	150, 182, 232, 287, 296, 397
SfaNI	GCATC	1 cut(s)	292
Sfr274I	CTCGAG	2 cut(s)	120, 231
SlaI	CTCGAG	2 cut(s)	120, 231
SmlI	CTYRAG	3 cut(s)	61, 120, 231
SmoI	CTYRAG	3 cut(s)	61, 120, 231
Sse9I	AATT	1 cut(s)	406
SsiI	CCGC	9 cut(s)	20, 23, 29, 35, 41, 44, 57, 107, 110
StyD4I	CCNGG	1 cut(s)	158
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	336
TaqI	TCGA	3 cut(s)	77, 121, 232
TasI	AATT	1 cut(s)	406
TauI	GCSGC	7 cut(s)	23, 26, 32, 38, 44, 60, 112
TfiI	GAWTC	1 cut(s)	258
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	4 cut(s)	26, 32, 38, 305
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	1 cut(s)	113
XhoI	CTCGAG	2 cut(s)	120, 231
XmnI	GAANNNNTTC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.