Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0014278

Physical Location & Seq

Genomic Coordinates Forward (+)

12094954 .. 12098086

Gene Structure 3133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G197600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCTTTGACTCTGAGAGCAGCGGCGGCGGGGCCCACTCGTGGCTTGAGACGGCTCTTCTCAACAAGTTTCATTCCCCCAATGAACTCTCCGGCGCCTCAGGCTCGAGAGAAGGCTGAGCCAAGCACCAACCTCTTCGTCTCTGGACTTAGCAAACGTACTACTTCAGAAAAACTACAGGAAGCCTTTTCTCAGTTTGGTGAAGTAGTTCATGCTAGAGTGGTAACCGATCGGGTATCAGGATATTCTAAAGGATTTGGTTTTGTAAGGTATGCTACCTTAGAAGATGCTGGCAAAGGCATAGACGGCATGGATGGAAAGTTTCTTGACGGTTGGGTCATATTTGCTGAATACGCAAGACCCAGACAACCACCTCCACCGCCTGAGAACAATATGTCTCCACCATATAGCCGTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:1900864 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

140

Amino Acids

15.27

Weight (kDa)

9.75

Isoelectric Point (pI)

52.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54580
fragaria_vesca	FvH4_3g21540
malus_domestica	MD03G1215200.v1.1 MD11G1229900.v1.1
prunus_persica	Prupe.4G197600_v2.0.a1
pyrus_communis	pycom03g16370 pycom11g20360
rosa_chinensis	RchiOBHm_Chr5g0036991
rosa_laevigata	RLG00000033741
rosa_multiflora	Rmu_sc0013351.1_g000001
rosa_roxburghii	Rroxscaffold_1G00043980
rosa_rugosa	Rorug05G0159600
rosa_samantha	Rh5AG251700 Rh5BG253200 Rh5CG285900 Rh5DG261800
rosa_wichuraiana	Rw5G023180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	335
AccB1I	GGYRCC	1 cut(s)	94
AciI	CCGC	4 cut(s)	23, 26, 29, 380
AcuI	CTGAAG	1 cut(s)	150
AcyI	GRCGYC	1 cut(s)	95
AfaI	GTAC	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	41
Alw26I	GTCTC	3 cut(s)	43, 145, 402
Ama87I	CYCGRG	1 cut(s)	105
AoxI	GGCC	1 cut(s)	32
ApaI	GGGCCC	1 cut(s)	36
ApeKI	GCWGC	1 cut(s)	20
Asp700I	GAANNNNTTC	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	2 cut(s)	32, 33
AsuHPI	GGTGA	1 cut(s)	212
AvaI	CYCGRG	1 cut(s)	105
AxyI	CCTNAGG	1 cut(s)	99
BaeGI	GKGCMC	1 cut(s)	36
BanI	GGYRCC	1 cut(s)	94
BanII	GRGCYC	1 cut(s)	36
BauI	CACGAG	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	32
BccI	CCATC	1 cut(s)	308
BceAI	ACGGC	3 cut(s)	68, 322, 396
BcoDI	GTCTC	3 cut(s)	43, 145, 402
BfaI	CTAG	1 cut(s)	216
BfmI	CTRYAG	1 cut(s)	176
BfoI	RGCGCY	1 cut(s)	98
BisI	GCNGC	3 cut(s)	21, 24, 27
BlpI	GCTNAGC	1 cut(s)	117
BlsI	GCNGC	3 cut(s)	22, 25, 28
BmeT110I	CYCGRG	1 cut(s)	105
BmgT120I	GGNCC	2 cut(s)	32, 33
BmiI	GGNNCC	3 cut(s)	33, 34, 96
BmsI	GCATC	1 cut(s)	277
Bpu1102I	GCTNAGC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	67
BsaHI	GRCGYC	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse21I	CCTNAGG	1 cut(s)	99
BseGI	GGATG	1 cut(s)	319
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMII	CTCAG	5 cut(s)	5, 108, 113, 206, 375
BseSI	GKGCMC	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	32
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	1 cut(s)	34
BshNI	GGYRCC	1 cut(s)	94
BsiEI	CGRYCG	1 cut(s)	232
BsiHKCI	CYCGRG	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmAI	GTCTC	3 cut(s)	43, 145, 402
BsmBI	CGTCTC	2 cut(s)	43, 145
BsnI	GGCC	1 cut(s)	34
BsoBI	CYCGRG	1 cut(s)	105
Bsp120I	GGGCCC	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp143I	GATC	1 cut(s)	229
Bsp1720I	GCTNAGC	1 cut(s)	117
BspACI	CCGC	4 cut(s)	23, 26, 29, 380
BspANI	GGCC	1 cut(s)	34
BspCNI	CTCAG	5 cut(s)	6, 109, 112, 205, 376
BspLI	GGNNCC	3 cut(s)	33, 34, 96
BspQI	GCTCTTC	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	94
BssMI	GATC	1 cut(s)	229
BssNI	GRCGYC	1 cut(s)	95
BssSI	CACGAG	1 cut(s)	39
Bst2BI	CACGAG	1 cut(s)	39
Bst4CI	ACNGT	1 cut(s)	332
Bst6I	CTCTTC	2 cut(s)	62, 140
BstACI	GRCGYC	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	292
BstDEI	CTNAG	7 cut(s)	14, 99, 117, 149, 192, 280, 384
BstEII	GGTNACC	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	319
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	1 cut(s)	232
BstMAI	GTCTC	3 cut(s)	43, 145, 402
BstMBI	GATC	1 cut(s)	229
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 101, 306, 353
BstPI	GGTNACC	1 cut(s)	223
BstSFI	CTRYAG	1 cut(s)	176
BstSLI	GKGCMC	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	32
Bsu36I	CCTNAGG	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	319
Cac8I	GCNNGC	1 cut(s)	292
CfoI	GCGC	1 cut(s)	97
Cfr13I	GGNCC	2 cut(s)	32, 33
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	2 cut(s)	212, 310
CviJI	RGCY	9 cut(s)	5, 34, 45, 55, 104, 116, 121, 185, 411
CviKI_1	RGCY	9 cut(s)	5, 34, 45, 55, 104, 116, 121, 185, 411
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	7 cut(s)	14, 99, 117, 149, 192, 280, 384
DinI	GGCGCC	1 cut(s)	96
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
DrdI	GACNNNNNNGTC	1 cut(s)	335
DseDI	GACNNNNNNGTC	1 cut(s)	335
Eam1104I	CTCTTC	2 cut(s)	62, 140
EarI	CTCTTC	2 cut(s)	62, 140
Eco24I	GRGCYC	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	150
Eco81I	CCTNAGG	1 cut(s)	99
Eco88I	CYCGRG	1 cut(s)	105
Eco91I	GGTNACC	1 cut(s)	223
EcoO109I	RGGNCCY	1 cut(s)	32
EcoO65I	GGTNACC	1 cut(s)	223
EcoT38I	GRGCYC	1 cut(s)	36
EgeI	GGCGCC	1 cut(s)	96
EheI	GGCGCC	1 cut(s)	96
Esp3I	CGTCTC	2 cut(s)	43, 145
FaeI	CATG	2 cut(s)	215, 313
FaiI	YATR	8 cut(s)	213, 273, 302, 311, 341, 395, 406, 408
FatI	CATG	2 cut(s)	211, 309
FauI	CCCGC	1 cut(s)	22
Fnu4HI	GCNGC	3 cut(s)	21, 24, 27
FokI	GGATG	1 cut(s)	326
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	3 cut(s)	21, 24, 27
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	3 cut(s)	21, 24, 27
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	34
HapII	CCGG	1 cut(s)	92
HhaI	GCGC	1 cut(s)	97
Hin1I	GRCGYC	1 cut(s)	95
Hin1II	CATG	2 cut(s)	215, 313
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HinfI	GANTC	1 cut(s)	10
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	1 cut(s)	212
Hpy188I	TCNGA	2 cut(s)	15, 169
Hpy188III	TCNNGA	4 cut(s)	107, 144, 240, 326
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4IV	ACGT	1 cut(s)	157
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 101, 306, 353
HpyF3I	CTNAG	7 cut(s)	14, 99, 117, 149, 192, 280, 384
HpySE526I	ACGT	1 cut(s)	157
Hsp92I	GRCGYC	1 cut(s)	95
Hsp92II	CATG	2 cut(s)	215, 313
HspAI	GCGC	1 cut(s)	95
KasI	GGCGCC	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	229
LguI	GCTCTTC	1 cut(s)	62
LpnPI	CCDG	8 cut(s)	86, 105, 129, 164, 225, 276, 376, 396
Lsp1109I	GCAGC	1 cut(s)	32
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	3 cut(s)	49, 127, 296
MhlI	GDGCHC	1 cut(s)	36
Mly113I	GGCGCC	1 cut(s)	95
MlyI	GAGTC	1 cut(s)	4
MnlI	CCTC	3 cut(s)	108, 143, 384
MroXI	GAANNNNTTC	1 cut(s)	207
MseI	TTAA	1 cut(s)	418
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	4 cut(s)	26, 101, 306, 353
NarI	GGCGCC	1 cut(s)	95
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	2 cut(s)	215, 313
NlaIV	GGNNCC	3 cut(s)	33, 34, 96
PaeR7I	CTCGAG	1 cut(s)	105
PciSI	GCTCTTC	1 cut(s)	62
PdmI	GAANNNNTTC	1 cut(s)	207
PkrI	GCNGC	3 cut(s)	22, 25, 28
Ple19I	CGATCG	1 cut(s)	232
PleI	GAGTC	1 cut(s)	4
PluTI	GGCGCC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	4
PspEI	GGTNACC	1 cut(s)	223
PspN4I	GGNNCC	3 cut(s)	33, 34, 96
PspOMI	GGGCCC	1 cut(s)	32
PspPI	GGNCC	2 cut(s)	32, 33
PvuI	CGATCG	1 cut(s)	232
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
SapI	GCTCTTC	1 cut(s)	62
SaqAI	TTAA	1 cut(s)	418
SatI	GCNGC	3 cut(s)	21, 24, 27
Sau3AI	GATC	1 cut(s)	229
Sau96I	GGNCC	2 cut(s)	32, 33
SchI	GAGTC	1 cut(s)	4
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	5 cut(s)	135, 160, 272, 281, 376
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	1 cut(s)	176
SfoI	GGCGCC	1 cut(s)	96
Sfr274I	CTCGAG	1 cut(s)	105
SlaI	CTCGAG	1 cut(s)	105
SmlI	CTYRAG	2 cut(s)	46, 105
SmoI	CTYRAG	2 cut(s)	46, 105
SsiI	CCGC	4 cut(s)	23, 26, 29, 380
SspDI	GGCGCC	1 cut(s)	94
SspMI	CTAG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	332
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	1 cut(s)	106
TauI	GCSGC	2 cut(s)	26, 29
Tru1I	TTAA	1 cut(s)	418
Tru9I	TTAA	1 cut(s)	418
TseI	GCWGC	1 cut(s)	20
TspDTI	ATGAA	3 cut(s)	61, 98, 200
XhoI	CTCGAG	1 cut(s)	105
XmnI	GAANNNNTTC	1 cut(s)	207
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.