Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012521

Physical Location & Seq

Genomic Coordinates Reverse (-)

22420600 .. 22422649

Gene Structure 2050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G55280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGCGATAATTCCGTTAGCACAGCTTAATGAGCTAACGATTTCTTCATCTTCTTCTTCGTTTCTTACCAAATCGATATCTTCTCATTCGTTGCATAGTAGCTGCATTTGCGCAAGTTCTAGAATCAGTCAATTCCGTGGCGGCTTCTCTAAACGAAGAAGCGATTCAACAAGGTCTAAGTCGATGCGATTGAGGTGTTCCTTCTCTCCGATGGAATCTGCGAGAATTAAGGTGATTGGTGTCGGTGGTGGTGGTAACAATGCCGTTAACCGGATGATTTCAAGCGGTTTACAGAGTGTTGATTTCTATGCGATAAACACGGATTCGCAAGCTCTGTTACAGTCTTCTGCTGAGAACCCACTTCAAATTGGAGAACTTTTAACTCGTGGGCTTGGCACTGGTGGAAACCCGCTTCTTGGAGAACAAGCTGCAGAAGAATCAAAAGATGCAATTGCTAATGCTCTTAAAGGATCAGACCTTGTTTTCATAACTGCTGGTATGGGTGGTGGAACAGGGTCTGGTGCTGCACCTGTGGTAGCTCAGATTTCGAAGGATGCTGGTTATTTGACTGTTGGTGTTGTTACCTATCCGTTTAGCTTTGAAGGACGTAAAAGATCTTTGCAGGCACTGGAAGCTATTGAAAAGCTCCAAAAGAATGTTGATACCCTTATCGTGATTCCAAATGATCGTCTGCTAGATATTGCTGATGAACAGACGCCACTTCAGGACGCGTTTCTTCTTGCAGATGATGTTTTACGCCAAGGAGTACAAGGAATCTCAGATATTATTACTATACCTGGACTAGTCAATGTAGATTTTGCAGATGTGAAGGCAGTCATGAAAGATTCTGGAACTGCAATGCTCGGGGTAGGTGTTTCTTCCAGCAAAAACCGGGCAGAAGAAGCAGCTGAACAAGCAACTTTGGCTCCATTGATCGGATCATCCATACAATCAGCTACTGGTGTCGTCTACAACATCACTGGTGGAAAAGACATAACTTTGCAGGAAGTGAACCGAGTATCACAGGTCGTGACAAGTTTGGCAGACCCATCGGCCAACATCATATTTGGAGCTGTTGTGGATGATCGCTACACCGGAGAGATTCATGTAACGATAATCGCCACAGGCTTCTCTCAGTCATTCCAGAAGACACTTCTGACTGATCCAAGAGCAGCTAAACTCCTTGACAAAATGGGATCATCAGGTCAACAAGAGAACAAAGGAATGTCTCTGCCTCACCAGAAGCAGTCTCCATCAACTATCTCTACCAAATCGTCTTCTCCCCGTAGACTTTTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009637 GO:0009657 GO:0009658 GO:0009902 GO:0009987 GO:0010020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019750 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

433

Amino Acids

45.56

Weight (kDa)

6.92

Isoelectric Point (pI)

50.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tubulin	PF00091	75 - 235	4.2e-50	Tubulin/FtsZ family, GTPase domain
FtsZ_C	PF12327	284 - 377	7.9e-30	FtsZ family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55280
fragaria_vesca	FvH4_3g23650 FvH4_3g23650
malus_domestica	MD03G1192200.v1.1 MD11G1208400.v1.1 MD17G1254500.v1.1
prunus_persica	Prupe.4G225000_v2.0.a1 Prupe.4G225000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0041711
rosa_laevigata	RLG00000034091
rosa_multiflora	Rmu_sc0000861.1_g000027 Rmu_sc0005255.1_g000021
rosa_roxburghii	Rroxscaffold_1G00038800
rosa_rugosa	Rorug05G0195100
rosa_samantha	Rh5AG280100 Rh5BG285600 Rh5CG317800 Rh5DG294400
rosa_wichuraiana	Rw5G026390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	112
AccI	GTMKAC	2 cut(s)	969, 1288
AccII	CGCG	1 cut(s)	731
AciI	CCGC	3 cut(s)	141, 285, 410
AclWI	GGATC	4 cut(s)	478, 946, 1157, 1204
AcoI	YGGCCR	1 cut(s)	1053
AcuI	CTGAAG	1 cut(s)	707
AcyI	GRCGYC	1 cut(s)	716
AfaI	GTAC	1 cut(s)	768
AfiI	CCNNNNNNNGG	3 cut(s)	270, 416, 935
AflIII	ACRYGT	1 cut(s)	729
AgsI	TTSAA	5 cut(s)	168, 282, 365, 602, 641
AhlI	ACTAGT	1 cut(s)	802
AjnI	CCWGG	1 cut(s)	796
Alw26I	GTCTC	2 cut(s)	1233, 1254
AlwI	GGATC	4 cut(s)	478, 946, 1157, 1204
AlwNI	CAGNNNCTG	3 cut(s)	518, 628, 959
Ama87I	CYCGRG	1 cut(s)	863
AoxI	GGCC	1 cut(s)	1053
ApeKI	GCWGC	5 cut(s)	102, 428, 524, 905, 1172
Asp700I	GAANNNNTTC	1 cut(s)	163
AspLEI	GCGC	1 cut(s)	113
AsuC2I	CCSGG	1 cut(s)	893
AsuHPI	GGTGA	2 cut(s)	244, 1229
AsuII	TTCGAA	1 cut(s)	548
AvaI	CYCGRG	1 cut(s)	863
BauI	CACGAG	1 cut(s)	384
BbsI	GAAGAC	3 cut(s)	336, 1154, 1269
BbvI	GCAGC	5 cut(s)	89, 415, 511, 917, 1184
BccI	CCATC	3 cut(s)	205, 1057, 1261
BceAI	ACGGC	1 cut(s)	248
BcgI	CGANNNNNNTGC	2 cut(s)	1032, 1066
BciT130I	CCWGG	1 cut(s)	798
BcnI	CCSGG	1 cut(s)	893
BcoDI	GTCTC	2 cut(s)	1233, 1254
BcuI	ACTAGT	1 cut(s)	802
BfaI	CTAG	4 cut(s)	120, 695, 803, 1300
BfmI	CTRYAG	1 cut(s)	429
BglII	AGATCT	1 cut(s)	614
BisI	GCNGC	6 cut(s)	103, 142, 429, 525, 906, 1173
BlsI	GCNGC	6 cut(s)	104, 143, 430, 526, 907, 1174
Bme1390I	CCNGG	2 cut(s)	798, 893
BmeT110I	CYCGRG	1 cut(s)	863
BmiI	GGNNCC	1 cut(s)	927
BmrFI	CCNGG	2 cut(s)	798, 893
BmsI	GCATC	3 cut(s)	174, 436, 544
BpiI	GAAGAC	3 cut(s)	336, 1154, 1269
Bpu14I	TTCGAA	1 cut(s)	548
BpuMI	CCSGG	1 cut(s)	893
Bsa29I	ATCGAT	1 cut(s)	74
BsaHI	GRCGYC	1 cut(s)	716
BsaJI	CCNNGG	2 cut(s)	136, 760
BsaWI	WCCGGW	2 cut(s)	270, 1094
BsaXI	ACNNNNNCTCC	4 cut(s)	910, 940, 1062, 1092
Bsc4I	CCNNNNNNNGG	3 cut(s)	270, 416, 935
Bse1I	ACTGG	4 cut(s)	403, 633, 964, 985
Bse3DI	GCAATG	1 cut(s)	864
BseBI	CCWGG	1 cut(s)	798
BseCI	ATCGAT	1 cut(s)	74
BseDI	CCNNGG	2 cut(s)	136, 760
BseGI	GGATG	4 cut(s)	279, 559, 941, 1087
BseLI	CCNNNNNNNGG	3 cut(s)	270, 416, 935
BseMI	GCAATG	1 cut(s)	864
BseMII	CTCAG	4 cut(s)	342, 554, 792, 1148
BseNI	ACTGG	4 cut(s)	403, 633, 964, 985
BseXI	GCAGC	5 cut(s)	89, 415, 511, 917, 1184
BsgI	GTGCAG	1 cut(s)	510
Bsh1236I	CGCG	1 cut(s)	731
BshFI	GGCC	1 cut(s)	1055
BshVI	ATCGAT	1 cut(s)	74
BsiHKCI	CYCGRG	1 cut(s)	863
BsiSI	CCGG	3 cut(s)	271, 892, 1095
BslI	CCNNNNNNNGG	3 cut(s)	270, 416, 935
BsmAI	GTCTC	2 cut(s)	1233, 1254
BsnI	GGCC	1 cut(s)	1055
BsoBI	CYCGRG	1 cut(s)	863
Bsp119I	TTCGAA	1 cut(s)	548
Bsp143I	GATC	8 cut(s)	470, 614, 685, 933, 938, 1084, 1162, 1196
BspACI	CCGC	3 cut(s)	141, 285, 410
BspANI	GGCC	1 cut(s)	1055
BspCNI	CTCAG	4 cut(s)	343, 553, 791, 1147
BspDI	ATCGAT	1 cut(s)	74
BspFNI	CGCG	1 cut(s)	731
BspHI	TCATGA	1 cut(s)	837
BspLI	GGNNCC	1 cut(s)	927
BspMAI	CTGCAG	1 cut(s)	433
BspPI	GGATC	4 cut(s)	478, 946, 1157, 1204
BspT104I	TTCGAA	1 cut(s)	548
BsrDI	GCAATG	1 cut(s)	864
BsrI	ACTGG	4 cut(s)	403, 633, 964, 985
BssECI	CCNNGG	2 cut(s)	136, 760
BssMI	GATC	8 cut(s)	470, 614, 685, 933, 938, 1084, 1162, 1196
BssNI	GRCGYC	1 cut(s)	716
BssSI	CACGAG	1 cut(s)	384
BssT1I	CCWWGG	1 cut(s)	760
Bst2BI	CACGAG	1 cut(s)	384
Bst2UI	CCWGG	1 cut(s)	798
Bst4CI	ACNGT	2 cut(s)	342, 571
BstACI	GRCGYC	1 cut(s)	716
BstBI	TTCGAA	1 cut(s)	548
BstC8I	GCNNGC	2 cut(s)	330, 624
BstDEI	CTNAG	5 cut(s)	177, 351, 540, 778, 1134
BstDSI	CCRYGG	1 cut(s)	136
BstF5I	GGATG	4 cut(s)	279, 559, 941, 1087
BstFNI	CGCG	1 cut(s)	731
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	8 cut(s)	473, 617, 688, 936, 941, 1087, 1165, 1199
BstMAI	GTCTC	2 cut(s)	1233, 1254
BstMBI	GATC	8 cut(s)	470, 614, 685, 933, 938, 1084, 1162, 1196
BstMWI	GCNNNNNNNGC	6 cut(s)	31, 108, 632, 902, 914, 923
BstNI	CCWGG	1 cut(s)	798
BstSCI	CCNGG	2 cut(s)	796, 891
BstSFI	CTRYAG	1 cut(s)	429
BstUI	CGCG	1 cut(s)	731
BstV1I	GCAGC	5 cut(s)	89, 415, 511, 917, 1184
BstV2I	GAAGAC	3 cut(s)	336, 1154, 1269
BstX2I	RGATCY	1 cut(s)	614
BstYI	RGATCY	1 cut(s)	614
Bsu15I	ATCGAT	1 cut(s)	74
BsuRI	GGCC	1 cut(s)	1055
BsuTUI	ATCGAT	1 cut(s)	74
BtgI	CCRYGG	1 cut(s)	136
BtsCI	GGATG	4 cut(s)	279, 559, 941, 1087
BtsIMutI	CAGTG	3 cut(s)	396, 626, 978
Cac8I	GCNNGC	2 cut(s)	330, 624
CaiI	CAGNNNCTG	3 cut(s)	518, 628, 959
CciI	TCATGA	1 cut(s)	837
CfoI	GCGC	1 cut(s)	113
ClaI	ATCGAT	1 cut(s)	74
CseI	GACGC	2 cut(s)	724, 737
Csp6I	GTAC	1 cut(s)	767
CviAII	CATG	2 cut(s)	838, 1106
CviQI	GTAC	1 cut(s)	767
DdeI	CTNAG	5 cut(s)	177, 351, 540, 778, 1134
DpnI	GATC	8 cut(s)	472, 616, 687, 935, 940, 1086, 1164, 1198
DpnII	GATC	8 cut(s)	470, 614, 685, 933, 938, 1084, 1162, 1196
EaeI	YGGCCR	1 cut(s)	1053
Eco130I	CCWWGG	1 cut(s)	760
Eco32I	GATATC	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	707
Eco88I	CYCGRG	1 cut(s)	863
EcoRII	CCWGG	1 cut(s)	796
EcoRV	GATATC	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	760
ErhI	CCWWGG	1 cut(s)	760
FaeI	CATG	2 cut(s)	841, 1109
FatI	CATG	2 cut(s)	837, 1105
FauI	CCCGC	1 cut(s)	417
FblI	GTMKAC	2 cut(s)	969, 1288
Fnu4HI	GCNGC	6 cut(s)	103, 142, 429, 525, 906, 1173
FokI	GGATG	4 cut(s)	286, 566, 928, 1094
Fsp4HI	GCNGC	6 cut(s)	103, 142, 429, 525, 906, 1173
FspBI	CTAG	4 cut(s)	120, 695, 803, 1300
FspI	TGCGCA	1 cut(s)	112
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	6 cut(s)	103, 142, 429, 525, 906, 1173
HaeIII	GGCC	1 cut(s)	1055
HapII	CCGG	3 cut(s)	271, 892, 1095
HgaI	GACGC	2 cut(s)	724, 737
HhaI	GCGC	1 cut(s)	113
Hin1I	GRCGYC	1 cut(s)	716
Hin1II	CATG	2 cut(s)	841, 1109
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HincII	GTYRAC	2 cut(s)	268, 1208
HindII	GTYRAC	2 cut(s)	268, 1208
HinfI	GANTC	9 cut(s)	123, 164, 215, 323, 437, 676, 774, 845, 1102
HpaI	GTTAAC	1 cut(s)	268
HpaII	CCGG	3 cut(s)	271, 892, 1095
HphI	GGTGA	2 cut(s)	244, 1229
Hpy166II	GTNNAC	6 cut(s)	268, 290, 970, 1012, 1208, 1289
Hpy188I	TCNGA	6 cut(s)	210, 475, 543, 781, 938, 1158
Hpy188III	TCNNGA	7 cut(s)	120, 673, 725, 838, 849, 1030, 1144
Hpy8I	GTNNAC	6 cut(s)	268, 290, 970, 1012, 1208, 1289
HpyAV	CCTTC	4 cut(s)	211, 544, 596, 823
HpyCH4III	ACNGT	2 cut(s)	342, 571
HpyCH4IV	ACGT	1 cut(s)	607
HpyF10VI	GCNNNNNNNGC	6 cut(s)	31, 108, 632, 902, 914, 923
HpyF3I	CTNAG	5 cut(s)	177, 351, 540, 778, 1134
HpySE526I	ACGT	1 cut(s)	607
Hsp92I	GRCGYC	1 cut(s)	716
Hsp92II	CATG	2 cut(s)	841, 1109
HspAI	GCGC	1 cut(s)	111
KspAI	GTTAAC	1 cut(s)	268
Kzo9I	GATC	8 cut(s)	470, 614, 685, 933, 938, 1084, 1162, 1196
LmnI	GCTCC	3 cut(s)	651, 931, 1070
Lsp1109I	GCAGC	5 cut(s)	89, 415, 511, 917, 1184
LweI	GCATC	3 cut(s)	174, 436, 544
MaeI	CTAG	4 cut(s)	120, 695, 803, 1300
MaeII	ACGT	1 cut(s)	607
MaeIII	GTNAC	5 cut(s)	254, 336, 580, 1030, 1108
MalI	GATC	8 cut(s)	472, 616, 687, 935, 940, 1086, 1164, 1198
MboI	GATC	8 cut(s)	470, 614, 685, 933, 938, 1084, 1162, 1196
MfeI	CAATTG	1 cut(s)	450
MflI	RGATCY	1 cut(s)	614
MluCI	AATT	5 cut(s)	9, 131, 225, 366, 450
MluI	ACGCGT	1 cut(s)	729
MnlI	CCTC	2 cut(s)	186, 1245
MroXI	GAANNNNTTC	1 cut(s)	163
MseI	TTAA	5 cut(s)	27, 228, 267, 380, 465
MspA1I	CMGCKG	1 cut(s)	908
MspI	CCGG	3 cut(s)	271, 892, 1095
MspR9I	CCNGG	2 cut(s)	798, 893
MunI	CAATTG	1 cut(s)	450
MvaI	CCWGG	1 cut(s)	798
MvnI	CGCG	1 cut(s)	731
MwoI	GCNNNNNNNGC	6 cut(s)	31, 108, 632, 902, 914, 923
NciI	CCSGG	1 cut(s)	893
NdeII	GATC	8 cut(s)	470, 614, 685, 933, 938, 1084, 1162, 1196
NlaIII	CATG	2 cut(s)	841, 1109
NlaIV	GGNNCC	1 cut(s)	927
NmuCI	GTSAC	1 cut(s)	1030
NsbI	TGCGCA	1 cut(s)	112
NspV	TTCGAA	1 cut(s)	548
PagI	TCATGA	1 cut(s)	837
PdmI	GAANNNNTTC	1 cut(s)	163
PfeI	GAWTC	9 cut(s)	123, 164, 215, 323, 437, 676, 774, 845, 1102
PkrI	GCNGC	6 cut(s)	104, 143, 430, 526, 907, 1174
Psp6I	CCWGG	1 cut(s)	796
PspGI	CCWGG	1 cut(s)	796
PspN4I	GGNNCC	1 cut(s)	927
PstI	CTGCAG	1 cut(s)	433
PstNI	CAGNNNCTG	3 cut(s)	518, 628, 959
PsuI	RGATCY	1 cut(s)	614
PvuII	CAGCTG	1 cut(s)	908
RsaI	GTAC	1 cut(s)	768
RsaNI	GTAC	1 cut(s)	767
SaqAI	TTAA	5 cut(s)	27, 228, 267, 380, 465
SatI	GCNGC	6 cut(s)	103, 142, 429, 525, 906, 1173
Sau3AI	GATC	8 cut(s)	470, 614, 685, 933, 938, 1084, 1162, 1196
ScrFI	CCNGG	2 cut(s)	798, 893
SfaNI	GCATC	3 cut(s)	174, 436, 544
SfcI	CTRYAG	1 cut(s)	429
SfuI	TTCGAA	1 cut(s)	548
SpeI	ACTAGT	1 cut(s)	802
Sse9I	AATT	5 cut(s)	9, 131, 225, 366, 450
SsiI	CCGC	3 cut(s)	141, 285, 410
SspMI	CTAG	4 cut(s)	120, 695, 803, 1300
StyD4I	CCNGG	2 cut(s)	796, 891
StyI	CCWWGG	1 cut(s)	760
TaaI	ACNGT	2 cut(s)	342, 571
TaiI	ACGT	1 cut(s)	610
TaqI	TCGA	3 cut(s)	74, 182, 548
TasI	AATT	5 cut(s)	9, 131, 225, 366, 450
TatI	WGTACW	1 cut(s)	766
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	9 cut(s)	123, 164, 215, 323, 437, 676, 774, 845, 1102
Tru1I	TTAA	5 cut(s)	27, 228, 267, 380, 465
Tru9I	TTAA	5 cut(s)	27, 228, 267, 380, 465
TscAI	CASTG	3 cut(s)	403, 633, 985
TseFI	GTSAC	1 cut(s)	1030
TseI	GCWGC	5 cut(s)	102, 428, 524, 905, 1172
Tsp45I	GTSAC	1 cut(s)	1030
TspDTI	ATGAA	5 cut(s)	36, 475, 723, 854, 1094
TspGWI	ACGGA	3 cut(s)	125, 335, 579
TspRI	CASTG	3 cut(s)	403, 633, 985
XbaI	TCTAGA	1 cut(s)	119
XmiI	GTMKAC	2 cut(s)	969, 1288
XmnI	GAANNNNTTC	1 cut(s)	163
XspI	CTAG	4 cut(s)	120, 695, 803, 1300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.