Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0012521

Physical Location & Seq

Genomic Coordinates Reverse (-)

30967691 .. 30968552

Gene Structure 862 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1254500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTGGTTCGGAATGTTGTCTTCTGTAATACTGCTTTATGAAACTGCATTTTACATTGGCGAATGTGGATTTTGCAGATGTAAAGGCAGTCATGAAAAACTCAGGAACTGCAATGCTCGGAGTAGGTGTTTCCTCCAGCAAAACCGTGCAGAAGAAGCAGCTGAACAGGCGACTTTGGCTCCTCTGATTGGATCTTCAATTCAATCAGCTACTGGCGTTGTGTATAATATCACAGGTGGAAAGGACATAACCCTGCAGGAAGTCAACAGAGTGTCTCAGGGGGGAAGCCGTAAATTATTGCTTGTGGTTGGTGCTGGTAGCCCTTTTTTCTTGTCTCCTTTCCTTGGCCTAATGAAGTCTGCAAACTATTGTAAATTTTCAGGTCCTTCTGCTAACATAATATTTGGGGCTGTTGTGGATGATCGCTACAACGGAGAGCTTCGTCTGACTATTATTGCAACATGCCTTTCGCAGTCATTTCAGAAGACACTACTAACAGACCCCGAGCCAGGAAAGCTGCTTGACAAGGTTGCAGGGGTCCGAGAAAGCAGAGGGATTCCCCTTCCCCCAAAGTCCTCAACCTCGCCCTCCACCATTTCATCAAAACCGTCGCCGAGAAAGCTTTTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009637 GO:0009657 GO:0009658 GO:0009902 GO:0009987 GO:0010020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019750 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

211

Amino Acids

22.75

Weight (kDa)

9.35

Isoelectric Point (pI)

52.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FtsZ_C	PF12327	47 - 93	6.9e-11	FtsZ family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55280
fragaria_vesca	FvH4_3g23650 FvH4_3g23650
malus_domestica	MD03G1192200.v1.1 MD11G1208400.v1.1 MD17G1254500.v1.1
prunus_persica	Prupe.4G225000_v2.0.a1 Prupe.4G225000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0041711
rosa_laevigata	RLG00000034091
rosa_multiflora	Rmu_sc0000861.1_g000027 Rmu_sc0005255.1_g000021
rosa_roxburghii	Rroxscaffold_1G00038800
rosa_rugosa	Rorug05G0195100
rosa_samantha	Rh5AG280100 Rh5BG285600 Rh5CG317800 Rh5DG294400
rosa_wichuraiana	Rw5G026390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	374
AfiI	CCNNNNNNNGG	3 cut(s)	188, 344, 509
AgsI	TTSAA	2 cut(s)	198, 203
AjnI	CCWGG	1 cut(s)	508
AluBI	AGCT	5 cut(s)	161, 209, 439, 517, 622
AluI	AGCT	5 cut(s)	161, 209, 439, 517, 622
Alw26I	GTCTC	2 cut(s)	279, 339
AlwI	GGATC	1 cut(s)	199
AlwNI	CAGNNNCTG	2 cut(s)	108, 212
Ama87I	CYCGRG	1 cut(s)	503
AoxI	GGCC	1 cut(s)	346
ApeKI	GCWGC	2 cut(s)	158, 517
ApoI	RAATTY	1 cut(s)	374
AspS9I	GGNCC	2 cut(s)	383, 538
AvaI	CYCGRG	1 cut(s)	503
AvaII	GGWCC	2 cut(s)	383, 538
BbsI	GAAGAC	2 cut(s)	12, 491
BbvI	GCAGC	2 cut(s)	170, 504
BceAI	ACGGC	1 cut(s)	273
BciT130I	CCWGG	1 cut(s)	510
BcoDI	GTCTC	2 cut(s)	279, 339
BfmI	CTRYAG	1 cut(s)	254
BisI	GCNGC	2 cut(s)	159, 518
BlsI	GCNGC	2 cut(s)	160, 519
Bme1390I	CCNGG	1 cut(s)	510
Bme18I	GGWCC	2 cut(s)	383, 538
BmeT110I	CYCGRG	1 cut(s)	503
BmgT120I	GGNCC	2 cut(s)	383, 538
BmiI	GGNNCC	2 cut(s)	180, 539
BmrFI	CCNGG	1 cut(s)	510
BpiI	GAAGAC	2 cut(s)	12, 491
BpmI	CTGGAG	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	343
BsaXI	ACNNNNNCTCC	4 cut(s)	112, 142, 163, 193
Bsc4I	CCNNNNNNNGG	3 cut(s)	188, 344, 509
Bse1I	ACTGG	1 cut(s)	217
Bse3DI	GCAATG	1 cut(s)	118
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	1 cut(s)	343
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	3 cut(s)	188, 344, 509
BseMI	GCAATG	1 cut(s)	118
BseMII	CTCAG	2 cut(s)	115, 290
BseNI	ACTGG	1 cut(s)	217
BseRI	GAGGAG	1 cut(s)	171
BseXI	GCAGC	2 cut(s)	170, 504
BsgI	GTGCAG	1 cut(s)	168
BshFI	GGCC	1 cut(s)	348
BsiHKCI	CYCGRG	1 cut(s)	503
BslI	CCNNNNNNNGG	3 cut(s)	188, 344, 509
BsmAI	GTCTC	2 cut(s)	279, 339
BsnI	GGCC	1 cut(s)	348
BsoBI	CYCGRG	1 cut(s)	503
Bsp143I	GATC	2 cut(s)	191, 421
BspANI	GGCC	1 cut(s)	348
BspCNI	CTCAG	2 cut(s)	114, 289
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	180, 539
BspMAI	CTGCAG	1 cut(s)	258
BspPI	GGATC	1 cut(s)	199
BsrDI	GCAATG	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	343
BssMI	GATC	2 cut(s)	191, 421
BssT1I	CCWWGG	1 cut(s)	343
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	2 cut(s)	146, 609
BstDEI	CTNAG	2 cut(s)	101, 276
BstF5I	GGATG	1 cut(s)	424
BstKTI	GATC	2 cut(s)	194, 424
BstMAI	GTCTC	2 cut(s)	279, 339
BstMBI	GATC	2 cut(s)	191, 421
BstMWI	GCNNNNNNNGC	5 cut(s)	155, 167, 176, 514, 619
BstNI	CCWGG	1 cut(s)	510
BstNSI	RCATGY	1 cut(s)	465
BstSCI	CCNGG	1 cut(s)	508
BstSFI	CTRYAG	1 cut(s)	254
BstV1I	GCAGC	2 cut(s)	170, 504
BstV2I	GAAGAC	2 cut(s)	12, 491
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	424
CaiI	CAGNNNCTG	2 cut(s)	108, 212
CciI	TCATGA	1 cut(s)	91
Cfr13I	GGNCC	2 cut(s)	383, 538
CviAII	CATG	2 cut(s)	92, 462
DdeI	CTNAG	2 cut(s)	101, 276
DpnI	GATC	2 cut(s)	193, 423
DpnII	GATC	2 cut(s)	191, 421
Eco130I	CCWWGG	1 cut(s)	343
Eco47I	GGWCC	2 cut(s)	383, 538
Eco88I	CYCGRG	1 cut(s)	503
EcoO109I	RGGNCCY	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	343
FaeI	CATG	2 cut(s)	95, 465
FaiI	YATR	6 cut(s)	39, 93, 225, 248, 398, 463
FalI	AAGNNNNNCTT	1 cut(s)	611
FatI	CATG	2 cut(s)	91, 461
Fnu4HI	GCNGC	2 cut(s)	159, 518
FokI	GGATG	1 cut(s)	431
Fsp4HI	GCNGC	2 cut(s)	159, 518
GluI	GCNGC	2 cut(s)	159, 518
GsuI	CTGGAG	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	348
Hin1II	CATG	2 cut(s)	95, 465
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HindIII	AAGCTT	1 cut(s)	620
HinfI	GANTC	1 cut(s)	556
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	6 cut(s)	11, 120, 186, 447, 483, 542
Hpy188III	TCNNGA	2 cut(s)	92, 103
Hpy8I	GTNNAC	1 cut(s)	265
Hpy99I	CGWCG	1 cut(s)	613
HpyAV	CCTTC	2 cut(s)	396, 572
HpyCH4III	ACNGT	2 cut(s)	146, 609
HpyCH4V	TGCA	8 cut(s)	47, 75, 111, 149, 256, 362, 458, 533
HpyF10VI	GCNNNNNNNGC	5 cut(s)	155, 167, 176, 514, 619
HpyF3I	CTNAG	2 cut(s)	101, 276
Hsp92II	CATG	2 cut(s)	95, 465
Kzo9I	GATC	2 cut(s)	191, 421
LmnI	GCTCC	1 cut(s)	184
Lsp1109I	GCAGC	2 cut(s)	170, 504
MalI	GATC	2 cut(s)	193, 423
MboI	GATC	2 cut(s)	191, 421
MboII	GAAGA	4 cut(s)	12, 164, 186, 496
MflI	RGATCY	1 cut(s)	191
MluCI	AATT	3 cut(s)	198, 293, 374
MnlI	CCTC	6 cut(s)	143, 192, 545, 586, 592, 598
MseI	TTAA	1 cut(s)	631
MspA1I	CMGCKG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	510
MvaI	CCWGG	1 cut(s)	510
MwoI	GCNNNNNNNGC	5 cut(s)	155, 167, 176, 514, 619
NdeII	GATC	2 cut(s)	191, 421
NlaIII	CATG	2 cut(s)	95, 465
NlaIV	GGNNCC	2 cut(s)	180, 539
NspI	RCATGY	1 cut(s)	465
PagI	TCATGA	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	556
PkrI	GCNGC	2 cut(s)	160, 519
PpuMI	RGGWCCY	1 cut(s)	383
Psp5II	RGGWCCY	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	2 cut(s)	180, 539
PspPI	GGNCC	2 cut(s)	383, 538
PspPPI	RGGWCCY	1 cut(s)	383
PstI	CTGCAG	1 cut(s)	258
PstNI	CAGNNNCTG	2 cut(s)	108, 212
PsuI	RGATCY	1 cut(s)	191
PvuII	CAGCTG	1 cut(s)	161
SaqAI	TTAA	1 cut(s)	631
SatI	GCNGC	2 cut(s)	159, 518
Sau3AI	GATC	2 cut(s)	191, 421
Sau96I	GGNCC	2 cut(s)	383, 538
SbfI	CCTGCAGG	1 cut(s)	258
ScrFI	CCNGG	1 cut(s)	510
SdaI	CCTGCAGG	1 cut(s)	258
SfcI	CTRYAG	1 cut(s)	254
SinI	GGWCC	2 cut(s)	383, 538
Sse8387I	CCTGCAGG	1 cut(s)	258
Sse9I	AATT	3 cut(s)	198, 293, 374
SspI	AATATT	1 cut(s)	402
StyD4I	CCNGG	1 cut(s)	508
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	2 cut(s)	146, 609
TasI	AATT	3 cut(s)	198, 293, 374
TfiI	GAWTC	1 cut(s)	556
Tru1I	TTAA	1 cut(s)	631
Tru9I	TTAA	1 cut(s)	631
TseI	GCWGC	2 cut(s)	158, 517
TspDTI	ATGAA	4 cut(s)	54, 108, 368, 588
TspGWI	ACGGA	1 cut(s)	447
VpaK11BI	GGWCC	2 cut(s)	383, 538
XapI	RAATTY	1 cut(s)	374
XceI	RCATGY	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.