Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0012521

Physical Location & Seq

Genomic Coordinates Forward (+)

30355823 .. 30358972

Gene Structure 3150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1208400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGAAAACGACGATGGCTGCATGGAAGAACCCGAACGAGCTAATCTGGACGACGTCGTCCTCAATTCCCGCAGCATTTCACCACCACAAGCCACTGCCTTCCCTCAGAACGTGCATTCCTCTGAGCAGCAAAAGAAGAAGCGCATGGAAGCGTCACCGTTTCGGGGTTGTCAGCTGTTCCTTTGCTCCCATGGAATCGGCCAAGATTAAGGTCGTTGGGGTCGGCGGAGGCGGCAACAATGCTGTTAATCGCATGATTGGCAGCGGTTTACATGGTGTTGATTTCTATGCCATAAACACGGATTCTCAAGCGCTCTTGCAGTCTGCTGCCGAGTACCCGCTGCAGATTGGGGAGCTTTTGACTCGTGGGCTAGGTACTGGTGGGAATCCACTTTTGGGGGAGCAAGCGGCAGAAGAGTCAAAAGAGGCTATTTCTAATGCTCTAAAAGGCTCAGATCTTGTCTTTATAACAGCTGGGATGGGCGGTGGAACAGGGTCTGGAGCTGCCCCTGTTGTTGCCCAGATATCCAAAGAGGCCGGTTGTTTGACTGTTGGTGTAGTTACCTACCCTTTCAGCTTTGAAGGGCGTAAAAGATCATTGCAGGCATTTGAGGCCATTGAAAAGCTGCAGAAAAATGTTGACACTCTAATAGTGATACCGAATGATCGCCTCCTTGATATTGCTGATGAGCAGACACCCCTTCAAGATGCTTTCCTTCTTGCTGATGATGTTTTACGTCAGGGAGTGCAAGGAATTTCTGACATAATCACAATACCCGGACTGGTAAATGTGGATTTTGCAGATGTAAAGGCAGTCATGAAAGACTCAGGAACTGCAATGCTAGGAGTAGGTGTTTCCTCCAGCAAAAACCGTGCAGAAGAAGCAGCTGAACAGGCGACTTTAGCTCCTCTGATTGGATCTTCCATTCAATCAGCTACTGGTGTTGTGTATAATATCACAGGAGGAAAGGACATAACCCTGCAGGAAGTCAACAGAGTTTCTCAGGTCGTGACGAGTTTGGCAGATCCTTCTGCAAACATAATATTTGGGGCTGTTGTGGATGACCGCTACACTGGAGAGATTCATGTGACTATTATTGCCACAGGGTTTTCACAGTCATTTCAGAAGACACTACTAACAGACCCCAAGGCGGCAAGGCTGCTTGACAAGGTTGCAGGGGGTCAAGAAAGCAGGGGGATTCCGCTTCCCCTCAAGTCCTCAACGTCGTCCTCTACCATTTCATCAAAACCGTCTCCGAGAAAACTTTTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009637 GO:0009657 GO:0009658 GO:0009902 GO:0009987 GO:0010020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019750 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

425

Amino Acids

44.63

Weight (kDa)

7.71

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tubulin	PF00091	68 - 228	1.8e-48	Tubulin/FtsZ family, GTPase domain
FtsZ_C	PF12327	277 - 370	7.6e-30	FtsZ family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55280
fragaria_vesca	FvH4_3g23650 FvH4_3g23650
malus_domestica	MD03G1192200.v1.1 MD11G1208400.v1.1 MD17G1254500.v1.1
prunus_persica	Prupe.4G225000_v2.0.a1 Prupe.4G225000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0041711
rosa_laevigata	RLG00000034091
rosa_multiflora	Rmu_sc0000861.1_g000027 Rmu_sc0005255.1_g000021
rosa_roxburghii	Rroxscaffold_1G00038800
rosa_rugosa	Rorug05G0195100
rosa_samantha	Rh5AG280100 Rh5BG285600 Rh5CG317800 Rh5DG294400
rosa_wichuraiana	Rw5G026390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	467
AasI	GACNNNNNNGTC	1 cut(s)	55
AatII	GACGTC	1 cut(s)	56
AclWI	GGATC	2 cut(s)	925, 1019
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	753
AcyI	GRCGYC	1 cut(s)	53
AfaI	GTAC	2 cut(s)	335, 376
AfeI	AGCGCT	1 cut(s)	312
AfiI	CCNNNNNNNGG	4 cut(s)	163, 395, 914, 1150
AgsI	TTSAA	4 cut(s)	581, 620, 704, 929
AjuI	GAANNNNNNNTTGG	2 cut(s)	377, 409
AloI	GAACNNNNNNTCC	2 cut(s)	100, 132
Alw26I	GTCTC	1 cut(s)	1257
AlwI	GGATC	2 cut(s)	925, 1019
AlwNI	CAGNNNCTG	3 cut(s)	497, 833, 938
Aor51HI	AGCGCT	1 cut(s)	312
AoxI	GGCC	3 cut(s)	198, 534, 612
ApoI	RAATTY	1 cut(s)	753
AspLEI	GCGC	2 cut(s)	143, 313
AsuC2I	CCSGG	1 cut(s)	777
AsuHPI	GGTGA	2 cut(s)	71, 146
BauI	CACGAG	1 cut(s)	363
BbsI	GAAGAC	1 cut(s)	1133
BccI	CCATC	2 cut(s)	7, 472
BcnI	CCSGG	1 cut(s)	777
BcoDI	GTCTC	1 cut(s)	1257
BfaI	CTAG	2 cut(s)	371, 842
BfmI	CTRYAG	3 cut(s)	341, 626, 980
BfoI	RGCGCY	1 cut(s)	314
BglII	AGATCT	1 cut(s)	454
Bme1390I	CCNGG	1 cut(s)	777
BmrFI	CCNGG	1 cut(s)	777
BmsI	GCATC	1 cut(s)	697
BpiI	GAAGAC	1 cut(s)	1133
BpmI	CTGGAG	3 cut(s)	519, 844, 1095
BpuEI	CTTGAG	2 cut(s)	291, 1196
BpuMI	CCSGG	1 cut(s)	777
BsaHI	GRCGYC	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	189, 1146
BsaXI	ACNNNNNCTCC	4 cut(s)	837, 867, 889, 919
Bsc4I	CCNNNNNNNGG	4 cut(s)	163, 395, 914, 1150
Bse118I	RCCGGY	1 cut(s)	536
Bse1I	ACTGG	4 cut(s)	382, 786, 943, 1078
Bse3DI	GCAATG	2 cut(s)	596, 843
BseDI	CCNNGG	2 cut(s)	189, 1146
BseGI	GGATG	2 cut(s)	483, 1066
BseLI	CCNNNNNNNGG	4 cut(s)	163, 395, 914, 1150
BseMI	GCAATG	2 cut(s)	596, 843
BseMII	CTCAG	5 cut(s)	113, 118, 465, 840, 1016
BseNI	ACTGG	4 cut(s)	382, 786, 943, 1078
BseRI	GAGGAG	1 cut(s)	897
BseYI	CCCAGC	1 cut(s)	473
BsgI	GTGCAG	1 cut(s)	894
BshFI	GGCC	3 cut(s)	200, 536, 614
BsiSI	CCGG	2 cut(s)	537, 777
BslI	CCNNNNNNNGG	4 cut(s)	163, 395, 914, 1150
BsmAI	GTCTC	1 cut(s)	1257
BsmBI	CGTCTC	1 cut(s)	1257
BsmI	GAATGC	1 cut(s)	114
BsnI	GGCC	3 cut(s)	200, 536, 614
Bsp143I	GATC	5 cut(s)	454, 593, 664, 917, 1024
Bsp19I	CCATGG	1 cut(s)	189
BspANI	GGCC	3 cut(s)	200, 536, 614
BspCNI	CTCAG	5 cut(s)	114, 117, 464, 839, 1015
BspHI	TCATGA	1 cut(s)	816
BspMAI	CTGCAG	3 cut(s)	345, 630, 984
BspPI	GGATC	2 cut(s)	925, 1019
BsrDI	GCAATG	2 cut(s)	596, 843
BsrFI	RCCGGY	1 cut(s)	536
BsrI	ACTGG	4 cut(s)	382, 786, 943, 1078
BssAI	RCCGGY	1 cut(s)	536
BssECI	CCNNGG	2 cut(s)	189, 1146
BssMI	GATC	5 cut(s)	454, 593, 664, 917, 1024
BssNI	GRCGYC	1 cut(s)	53
BssSI	CACGAG	1 cut(s)	363
BssT1I	CCWWGG	2 cut(s)	189, 1146
Bst2BI	CACGAG	1 cut(s)	363
Bst4CI	ACNGT	5 cut(s)	158, 550, 872, 1116, 1251
Bst6I	CTCTTC	1 cut(s)	408
BstACI	GRCGYC	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	405, 603
BstDEI	CTNAG	5 cut(s)	104, 122, 451, 826, 1002
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	483, 1066
BstH2I	RGCGCY	1 cut(s)	314
BstHHI	GCGC	2 cut(s)	143, 313
BstKTI	GATC	5 cut(s)	457, 596, 667, 920, 1027
BstMAI	GTCTC	1 cut(s)	1257
BstMBI	GATC	5 cut(s)	454, 593, 664, 917, 1024
BstMWI	GCNNNNNNNGC	6 cut(s)	231, 258, 611, 881, 893, 902
BstSCI	CCNGG	1 cut(s)	775
BstSFI	CTRYAG	3 cut(s)	341, 626, 980
BstV2I	GAAGAC	1 cut(s)	1133
BstX2I	RGATCY	3 cut(s)	454, 917, 1024
BstYI	RGATCY	3 cut(s)	454, 917, 1024
BsuRI	GGCC	3 cut(s)	200, 536, 614
BtgI	CCRYGG	1 cut(s)	189
BtsCI	GGATG	2 cut(s)	483, 1066
BtsI	GCAGTG	1 cut(s)	92
BtsIMutI	CAGTG	2 cut(s)	92, 1071
Cac8I	GCNNGC	2 cut(s)	405, 603
CaiI	CAGNNNCTG	3 cut(s)	497, 833, 938
CciI	TCATGA	1 cut(s)	816
CfoI	GCGC	2 cut(s)	143, 313
Cfr10I	RCCGGY	1 cut(s)	536
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	2 cut(s)	334, 375
CviAII	CATG	7 cut(s)	21, 144, 190, 253, 272, 817, 1085
CviQI	GTAC	2 cut(s)	334, 375
DdeI	CTNAG	5 cut(s)	104, 122, 451, 826, 1002
DpnI	GATC	5 cut(s)	456, 595, 666, 919, 1026
DpnII	GATC	5 cut(s)	454, 593, 664, 917, 1024
DrdI	GACNNNNNNGTC	1 cut(s)	55
DseDI	GACNNNNNNGTC	1 cut(s)	55
EaeI	YGGCCR	1 cut(s)	198
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
EciI	GGCGGA	1 cut(s)	240
Eco130I	CCWWGG	2 cut(s)	189, 1146
Eco32I	GATATC	1 cut(s)	525
Eco47III	AGCGCT	1 cut(s)	312
EcoRV	GATATC	1 cut(s)	525
EcoT14I	CCWWGG	2 cut(s)	189, 1146
ErhI	CCWWGG	2 cut(s)	189, 1146
Esp3I	CGTCTC	1 cut(s)	1257
FaeI	CATG	7 cut(s)	24, 147, 193, 256, 275, 820, 1088
FatI	CATG	7 cut(s)	20, 143, 189, 252, 271, 816, 1084
FauI	CCCGC	2 cut(s)	76, 345
FokI	GGATG	2 cut(s)	490, 1073
FspBI	CTAG	2 cut(s)	371, 842
GlaI	GCGC	2 cut(s)	142, 312
GsaI	CCCAGC	1 cut(s)	477
GsuI	CTGGAG	3 cut(s)	519, 844, 1095
HaeII	RGCGCY	1 cut(s)	314
HaeIII	GGCC	3 cut(s)	200, 536, 614
HapII	CCGG	2 cut(s)	537, 777
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	2 cut(s)	143, 313
Hin1I	GRCGYC	1 cut(s)	53
Hin1II	CATG	7 cut(s)	24, 147, 193, 256, 275, 820, 1088
Hin6I	GCGC	2 cut(s)	141, 311
HinP1I	GCGC	2 cut(s)	141, 311
HincII	GTYRAC	2 cut(s)	640, 991
HindII	GTYRAC	2 cut(s)	640, 991
HinfI	GANTC	8 cut(s)	194, 302, 361, 385, 416, 824, 1081, 1198
HpaII	CCGG	2 cut(s)	537, 777
HphI	GGTGA	2 cut(s)	71, 146
Hpy166II	GTNNAC	3 cut(s)	269, 640, 991
Hpy188I	TCNGA	7 cut(s)	107, 123, 454, 760, 912, 1125, 1257
Hpy188III	TCNNGA	7 cut(s)	46, 498, 704, 817, 828, 1009, 1184
Hpy8I	GTNNAC	3 cut(s)	269, 640, 991
Hpy99I	CGWCG	4 cut(s)	13, 55, 58, 1228
HpyAV	CCTTC	5 cut(s)	108, 575, 710, 725, 1038
HpyCH4III	ACNGT	5 cut(s)	158, 550, 872, 1116, 1251
HpyCH4IV	ACGT	4 cut(s)	53, 110, 736, 1223
HpyF10VI	GCNNNNNNNGC	6 cut(s)	231, 258, 611, 881, 893, 902
HpyF3I	CTNAG	5 cut(s)	104, 122, 451, 826, 1002
HpySE526I	ACGT	4 cut(s)	53, 110, 736, 1223
Hsp92I	GRCGYC	1 cut(s)	53
Hsp92II	CATG	7 cut(s)	24, 147, 193, 256, 275, 820, 1088
HspAI	GCGC	2 cut(s)	141, 311
Kzo9I	GATC	5 cut(s)	454, 593, 664, 917, 1024
LmnI	GCTCC	5 cut(s)	190, 352, 400, 500, 910
LweI	GCATC	1 cut(s)	697
MaeI	CTAG	2 cut(s)	371, 842
MaeII	ACGT	4 cut(s)	53, 110, 736, 1223
MaeIII	GTNAC	4 cut(s)	152, 559, 1009, 1087
MalI	GATC	5 cut(s)	456, 595, 666, 919, 1026
MboI	GATC	5 cut(s)	454, 593, 664, 917, 1024
MboII	GAAGA	6 cut(s)	37, 147, 425, 890, 912, 1138
MflI	RGATCY	3 cut(s)	454, 917, 1024
MluCI	AATT	2 cut(s)	63, 753
MlyI	GAGTC	3 cut(s)	355, 425, 818
MseI	TTAA	3 cut(s)	207, 246, 1273
MspA1I	CMGCKG	5 cut(s)	174, 264, 340, 473, 887
MspI	CCGG	2 cut(s)	537, 777
MspR9I	CCNGG	1 cut(s)	777
Mva1269I	GAATGC	1 cut(s)	114
MwoI	GCNNNNNNNGC	6 cut(s)	231, 258, 611, 881, 893, 902
NciI	CCSGG	1 cut(s)	777
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	5 cut(s)	454, 593, 664, 917, 1024
NlaIII	CATG	7 cut(s)	24, 147, 193, 256, 275, 820, 1088
NmeAIII	GCCGAG	1 cut(s)	355
NmuCI	GTSAC	3 cut(s)	152, 1009, 1087
PagI	TCATGA	1 cut(s)	816
PctI	GAATGC	1 cut(s)	114
PfeI	GAWTC	5 cut(s)	194, 302, 385, 1081, 1198
PflFI	GACNNNGTC	2 cut(s)	52, 55
PleI	GAGTC	3 cut(s)	355, 424, 818
PpsI	GAGTC	3 cut(s)	355, 424, 818
PsiI	TTATAA	1 cut(s)	467
PspFI	CCCAGC	1 cut(s)	473
PstI	CTGCAG	3 cut(s)	345, 630, 984
PstNI	CAGNNNCTG	3 cut(s)	497, 833, 938
PsuI	RGATCY	3 cut(s)	454, 917, 1024
PsyI	GACNNNGTC	2 cut(s)	52, 55
PvuII	CAGCTG	3 cut(s)	174, 473, 887
RsaI	GTAC	2 cut(s)	335, 376
RsaNI	GTAC	2 cut(s)	334, 375
SaqAI	TTAA	3 cut(s)	207, 246, 1273
Sau3AI	GATC	5 cut(s)	454, 593, 664, 917, 1024
SbfI	CCTGCAGG	1 cut(s)	984
SchI	GAGTC	3 cut(s)	355, 425, 818
ScrFI	CCNGG	1 cut(s)	777
SdaI	CCTGCAGG	1 cut(s)	984
SfaNI	GCATC	1 cut(s)	697
SfcI	CTRYAG	3 cut(s)	341, 626, 980
SmlI	CTYRAG	2 cut(s)	306, 1211
SmoI	CTYRAG	2 cut(s)	306, 1211
Sse8387I	CCTGCAGG	1 cut(s)	984
Sse9I	AATT	2 cut(s)	63, 753
SspI	AATATT	1 cut(s)	1044
SspMI	CTAG	2 cut(s)	371, 842
StyD4I	CCNGG	1 cut(s)	775
StyI	CCWWGG	2 cut(s)	189, 1146
TaaI	ACNGT	5 cut(s)	158, 550, 872, 1116, 1251
TaiI	ACGT	4 cut(s)	56, 113, 739, 1226
TasI	AATT	2 cut(s)	63, 753
TauI	GCSGC	3 cut(s)	234, 410, 1154
TfiI	GAWTC	5 cut(s)	194, 302, 385, 1081, 1198
Tru1I	TTAA	3 cut(s)	207, 246, 1273
Tru9I	TTAA	3 cut(s)	207, 246, 1273
TscAI	CASTG	2 cut(s)	99, 1078
TseFI	GTSAC	3 cut(s)	152, 1009, 1087
Tsp45I	GTSAC	3 cut(s)	152, 1009, 1087
TspDTI	ATGAA	4 cut(s)	17, 833, 1073, 1230
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	2 cut(s)	99, 1078
Tth111I	GACNNNGTC	2 cut(s)	52, 55
XapI	RAATTY	1 cut(s)	753
XspI	CTAG	2 cut(s)	371, 842
ZraI	GACGTC	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.