Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0012521

Physical Location & Seq

Genomic Coordinates Forward (+)

56294794 .. 56298231

Gene Structure 3438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00038800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGAAGGACTCAGGAACCGCAATGCTTGGAGTAGGGGTCTCCTCTAGCAAAAATCGTGCAGAAGAAGCAGCTGAACAGGCGACTTTGGCTCCGCTGATTGGGTCTTCAATACAATCAGCCACTGGAGTAGTGTATAATATCACTGGAGGAAAGGACATAACCCTGCAGGAAGTGAACAGAGTGTCTCAGGTTGTAACAAGTTTGGCAGATCCTTCTGCTAACATAATATTTGGGGCTGTTGTGGATGACCGCTACACCGGAGAGATTCATGTGACTATTATTGCAACAGGCTTTTCACAATCATTTCAGAAGACACTACTAACAGACCCCAAAGCAGCAAGGCTGGTTGACAAAGTTGCAGCGGATCAAGAAACCAGGGGGATCCCCCTTCCCCTCAAGTCCTCCACCGCTCCATCAAGACCGGCTACAAGAAAGCTTTTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009637 GO:0009657 GO:0009658 GO:0009902 GO:0009987 GO:0010020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019750 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

148

Amino Acids

15.55

Weight (kDa)

8.01

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FtsZ_C	PF12327	5 - 98	7.1e-31	FtsZ family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55280
fragaria_vesca	FvH4_3g23650 FvH4_3g23650
malus_domestica	MD03G1192200.v1.1 MD11G1208400.v1.1 MD17G1254500.v1.1
prunus_persica	Prupe.4G225000_v2.0.a1 Prupe.4G225000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0041711
rosa_laevigata	RLG00000034091
rosa_multiflora	Rmu_sc0000861.1_g000027 Rmu_sc0005255.1_g000021
rosa_roxburghii	Rroxscaffold_1G00038800
rosa_rugosa	Rorug05G0195100
rosa_samantha	Rh5AG280100 Rh5BG285600 Rh5CG317800 Rh5DG294400
rosa_wichuraiana	Rw5G026390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	410
AciI	CCGC	5 cut(s)	18, 92, 250, 362, 408
AclWI	GGATC	4 cut(s)	203, 372, 376, 389
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	1 cut(s)	108
AjnI	CCWGG	1 cut(s)	374
AluBI	AGCT	2 cut(s)	71, 436
AluI	AGCT	2 cut(s)	71, 436
Alw26I	GTCTC	2 cut(s)	43, 189
AlwI	GGATC	4 cut(s)	203, 372, 376, 389
AlwNI	CAGNNNCTG	1 cut(s)	122
ApeKI	GCWGC	3 cut(s)	68, 335, 359
BamHI	GGATCC	1 cut(s)	381
BbsI	GAAGAC	2 cut(s)	96, 317
BbvI	GCAGC	3 cut(s)	80, 347, 371
BccI	CCATC	1 cut(s)	421
BciT130I	CCWGG	1 cut(s)	376
BcoDI	GTCTC	2 cut(s)	43, 189
BfaI	CTAG	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	164
BisI	GCNGC	3 cut(s)	69, 336, 360
BlsI	GCNGC	3 cut(s)	70, 337, 361
Bme1390I	CCNGG	1 cut(s)	376
BmiI	GGNNCC	3 cut(s)	16, 90, 383
BmrFI	CCNGG	1 cut(s)	376
BpiI	GAAGAC	2 cut(s)	96, 317
BpmI	CTGGAG	2 cut(s)	144, 165
BpuEI	CTTGAG	1 cut(s)	380
BsaI	GGTCTC	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	375
BsaWI	WCCGGW	1 cut(s)	257
BsaXI	ACNNNNNCTCC	4 cut(s)	21, 51, 73, 103
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse118I	RCCGGY	1 cut(s)	421
Bse1I	ACTGG	2 cut(s)	127, 148
Bse3DI	GCAATG	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	376
BseDI	CCNNGG	1 cut(s)	375
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMI	GCAATG	1 cut(s)	27
BseMII	CTCAG	2 cut(s)	24, 200
BseNI	ACTGG	2 cut(s)	127, 148
BseRI	GAGGAG	1 cut(s)	31
BseXI	GCAGC	3 cut(s)	80, 347, 371
BsgI	GTGCAG	1 cut(s)	78
BsiSI	CCGG	2 cut(s)	258, 422
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	2 cut(s)	43, 189
Bso31I	GGTCTC	1 cut(s)	43
Bsp143I	GATC	3 cut(s)	208, 364, 381
BspACI	CCGC	5 cut(s)	18, 92, 250, 362, 408
BspCNI	CTCAG	2 cut(s)	23, 199
BspLI	GGNNCC	3 cut(s)	16, 90, 383
BspMAI	CTGCAG	1 cut(s)	168
BspPI	GGATC	4 cut(s)	203, 372, 376, 389
BspTNI	GGTCTC	1 cut(s)	43
BsrBI	CCGCTC	1 cut(s)	410
BsrDI	GCAATG	1 cut(s)	27
BsrFI	RCCGGY	1 cut(s)	421
BsrI	ACTGG	2 cut(s)	127, 148
BssAI	RCCGGY	1 cut(s)	421
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	3 cut(s)	208, 364, 381
Bst2UI	CCWGG	1 cut(s)	376
BstDEI	CTNAG	2 cut(s)	10, 186
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	3 cut(s)	211, 367, 384
BstMAI	GTCTC	2 cut(s)	43, 189
BstMBI	GATC	3 cut(s)	208, 364, 381
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 77, 86
BstNI	CCWGG	1 cut(s)	376
BstSCI	CCNGG	1 cut(s)	374
BstSFI	CTRYAG	1 cut(s)	164
BstV1I	GCAGC	3 cut(s)	80, 347, 371
BstV2I	GAAGAC	2 cut(s)	96, 317
BstX2I	RGATCY	2 cut(s)	208, 381
BstYI	RGATCY	2 cut(s)	208, 381
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	2 cut(s)	120, 141
CaiI	CAGNNNCTG	1 cut(s)	122
Cfr10I	RCCGGY	1 cut(s)	421
CviAII	CATG	1 cut(s)	269
CviJI	RGCY	8 cut(s)	71, 89, 119, 236, 291, 343, 425, 436
CviKI_1	RGCY	8 cut(s)	71, 89, 119, 236, 291, 343, 425, 436
DdeI	CTNAG	2 cut(s)	10, 186
DpnI	GATC	3 cut(s)	210, 366, 383
DpnII	GATC	3 cut(s)	208, 364, 381
Eco31I	GGTCTC	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	374
FaeI	CATG	1 cut(s)	272
FaiI	YATR	4 cut(s)	135, 158, 224, 270
FalI	AAGNNNNNCTT	1 cut(s)	425
FatI	CATG	1 cut(s)	268
Fnu4HI	GCNGC	3 cut(s)	69, 336, 360
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	3 cut(s)	69, 336, 360
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	3 cut(s)	69, 336, 360
GsuI	CTGGAG	2 cut(s)	144, 165
HapII	CCGG	2 cut(s)	258, 422
Hin1II	CATG	1 cut(s)	272
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	2 cut(s)	8, 265
HpaII	CCGG	2 cut(s)	258, 422
Hpy166II	GTNNAC	2 cut(s)	175, 349
Hpy188I	TCNGA	1 cut(s)	309
Hpy188III	TCNNGA	3 cut(s)	12, 368, 417
Hpy8I	GTNNAC	2 cut(s)	175, 349
HpyAV	CCTTC	2 cut(s)	222, 398
HpyCH4V	TGCA	4 cut(s)	59, 166, 284, 359
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 77, 86
HpyF3I	CTNAG	2 cut(s)	10, 186
Hsp92II	CATG	1 cut(s)	272
Kzo9I	GATC	3 cut(s)	208, 364, 381
LmnI	GCTCC	2 cut(s)	94, 415
Lsp1109I	GCAGC	3 cut(s)	80, 347, 371
MaeI	CTAG	1 cut(s)	45
MaeIII	GTNAC	2 cut(s)	193, 271
MalI	GATC	3 cut(s)	210, 366, 383
MbiI	CCGCTC	1 cut(s)	410
MboI	GATC	3 cut(s)	208, 364, 381
MboII	GAAGA	3 cut(s)	74, 96, 322
MflI	RGATCY	2 cut(s)	208, 381
MlyI	GAGTC	1 cut(s)	2
MnlI	CCTC	4 cut(s)	52, 140, 404, 412
MseI	TTAA	1 cut(s)	445
MspA1I	CMGCKG	3 cut(s)	71, 94, 362
MspI	CCGG	2 cut(s)	258, 422
MspR9I	CCNGG	1 cut(s)	376
MvaI	CCWGG	1 cut(s)	376
MwoI	GCNNNNNNNGC	3 cut(s)	65, 77, 86
NdeII	GATC	3 cut(s)	208, 364, 381
NlaIII	CATG	1 cut(s)	272
NlaIV	GGNNCC	3 cut(s)	16, 90, 383
NmuCI	GTSAC	1 cut(s)	271
PfeI	GAWTC	1 cut(s)	265
PkrI	GCNGC	3 cut(s)	70, 337, 361
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
Psp6I	CCWGG	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	374
PspN4I	GGNNCC	3 cut(s)	16, 90, 383
PstI	CTGCAG	1 cut(s)	168
PstNI	CAGNNNCTG	1 cut(s)	122
PsuI	RGATCY	2 cut(s)	208, 381
PvuII	CAGCTG	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	445
SatI	GCNGC	3 cut(s)	69, 336, 360
Sau3AI	GATC	3 cut(s)	208, 364, 381
SbfI	CCTGCAGG	1 cut(s)	168
SchI	GAGTC	1 cut(s)	2
ScrFI	CCNGG	1 cut(s)	376
SdaI	CCTGCAGG	1 cut(s)	168
SetI	ASST	3 cut(s)	73, 192, 438
SfcI	CTRYAG	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse8387I	CCTGCAGG	1 cut(s)	168
SsiI	CCGC	5 cut(s)	18, 92, 250, 362, 408
SspI	AATATT	1 cut(s)	228
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	374
TfiI	GAWTC	1 cut(s)	265
Tru1I	TTAA	1 cut(s)	445
Tru9I	TTAA	1 cut(s)	445
TscAI	CASTG	2 cut(s)	127, 148
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	3 cut(s)	68, 335, 359
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	2 cut(s)	17, 257
TspRI	CASTG	2 cut(s)	127, 148
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.