Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005255.1

Orthogroup ID

OG0012521

Physical Location & Seq

Genomic Coordinates Forward (+)

99753 .. 102899

Gene Structure 3147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005255.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

atggctactttggcgaacccgaacgagctaatttcgacgacgtcgtcctcaattaccaccgcatttcaccaccgcaatgcattgacttcccccagaacatgcattcctctgggtacaaaaagaaggagcgcagcgaaacgacatcgtttcgggtcggtcagctgctccttcgcgcccatggaaacggccaagattaaggtcgttggggtcggcggcggcggcaacaatgccgttaatcgcatgattggcagcggtttacatggtgttgatttctatgcgattaacacggatgctcaagcactgttacagtcggctgcagagaacccgcttcaaattggagagcttttgactcgtggactaggtactggtgggaatccacttttgggggaacaagctgcggaggaatcaaaagaggccattgcgggtgctcttaaaggctcagatctcgtctttataacagctggtatgggtggaggcacagggtctggtgctgcccctgttgttgcacaaatatctagagaggcaggctatttgactgttggtgtggttacctaccctttcagttttgaagggcgtaaaagatcagtgcaggcattggaagctattgaaaaattacagaaaaatgttgacactcttatagtgataccgaatgaccgcctgcttgatattgctgatgagcagacaccccttcaggatgctttccttcttgctgatgatgttttgcgacaaggagtgcaaggaatttctgacataatcacaatacctggactggtaaatgtggattttgcagatgtaaaggcagtcatgaaagactcaggaactgcaatgcttggagtaggggtttcctccagcaaaaatcgtgcagaagaagcagccgaacaggcgactttggctccgctaattgggtcttcaatacaatcagccactggagtagtgtataatattactggaggaaaggacataaccctgcaggaagtgaacaaagtgtctcaggttgtaacaagtttggcggatccttctgctaacataatatttggggctgttgtggatgaccgctacaccggagagattcatgtgactattattgcaacaggcttttcacaatcatttcagaagacactattaacagaccccaaagcagcaaggctggttgacaaagttgcagcgggtcaagaaaccagggggatcccccttcccctcaagtcctccaccgatccatcaagaccggctacaagaaagcttttcttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009637 GO:0009657 GO:0009658 GO:0009902 GO:0009987 GO:0010020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019750 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

416

Amino Acids

43.4

Weight (kDa)

6.25

Isoelectric Point (pI)

34.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55280
fragaria_vesca	FvH4_3g23650 FvH4_3g23650
malus_domestica	MD03G1192200.v1.1 MD11G1208400.v1.1 MD17G1254500.v1.1
prunus_persica	Prupe.4G225000_v2.0.a1 Prupe.4G225000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0041711
rosa_laevigata	RLG00000034091
rosa_multiflora	Rmu_sc0000861.1_g000027 Rmu_sc0005255.1_g000021
rosa_roxburghii	Rroxscaffold_1G00038800
rosa_rugosa	Rorug05G0195100
rosa_samantha	Rh5AG280100 Rh5BG285600 Rh5CG317800 Rh5DG294400
rosa_wichuraiana	Rw5G026390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	455
AasI	GACNNNNNNGTC	1 cut(s)	43
AatII	GACGTC	1 cut(s)	44
AccII	CGCG	1 cut(s)	173
AclWI	GGATC	5 cut(s)	1007, 1020, 1180, 1193, 1208
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	741
AcuI	CTGAAG	1 cut(s)	674
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	2 cut(s)	115, 364
AfiI	CCNNNNNNNGG	2 cut(s)	383, 902
AgsI	TTSAA	4 cut(s)	332, 569, 608, 912
AjnI	CCWGG	2 cut(s)	763, 1178
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AloI	GAACNNNNNNTCC	2 cut(s)	88, 120
AluBI	AGCT	7 cut(s)	28, 162, 343, 395, 461, 602, 1240
AluI	AGCT	7 cut(s)	28, 162, 343, 395, 461, 602, 1240
Alw21I	GWGCWC	1 cut(s)	430
Alw26I	GTCTC	1 cut(s)	993
AlwI	GGATC	5 cut(s)	1007, 1020, 1180, 1193, 1208
AlwNI	CAGNNNCTG	3 cut(s)	485, 821, 926
AoxI	GGCC	2 cut(s)	186, 414
ApeKI	GCWGC	9 cut(s)	131, 162, 249, 314, 395, 491, 872, 1139, 1163
ApoI	RAATTY	1 cut(s)	741
AspLEI	GCGC	2 cut(s)	131, 175
AsuHPI	GGTGA	1 cut(s)	59
BamHI	GGATCC	2 cut(s)	1012, 1185
BauI	CACGAG	1 cut(s)	351
BbsI	GAAGAC	2 cut(s)	900, 1121
Bbv12I	GWGCWC	1 cut(s)	430
BbvI	GCAGC	9 cut(s)	143, 149, 261, 301, 382, 478, 884, 1151, 1175
BccI	CCATC	1 cut(s)	1225
BceAI	ACGGC	2 cut(s)	201, 215
BciT130I	CCWGG	2 cut(s)	765, 1180
BcoDI	GTCTC	1 cut(s)	993
BfaI	CTAG	2 cut(s)	359, 516
BfmI	CTRYAG	2 cut(s)	315, 968
BglI	GCCNNNNNGGC	1 cut(s)	881
BglII	AGATCT	1 cut(s)	442
Bme1390I	CCNGG	2 cut(s)	765, 1180
BmiI	GGNNCC	3 cut(s)	894, 1014, 1187
BmrFI	CCNGG	2 cut(s)	765, 1180
BmsI	GCATC	2 cut(s)	280, 685
BpiI	GAAGAC	2 cut(s)	900, 1121
BpmI	CTGGAG	3 cut(s)	832, 948, 969
BpuEI	CTTGAG	2 cut(s)	279, 1184
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	177, 1179
BsaWI	WCCGGW	1 cut(s)	1061
BsaXI	ACNNNNNCTCC	4 cut(s)	825, 855, 877, 907
Bsc4I	CCNNNNNNNGG	2 cut(s)	383, 902
Bse118I	RCCGGY	1 cut(s)	1225
Bse1I	ACTGG	4 cut(s)	370, 774, 931, 952
Bse3DI	GCAATG	3 cut(s)	82, 417, 831
BseBI	CCWGG	2 cut(s)	765, 1180
BseDI	CCNNGG	2 cut(s)	177, 1179
BseGI	GGATG	3 cut(s)	295, 700, 1054
BseLI	CCNNNNNNNGG	2 cut(s)	383, 902
BseMI	GCAATG	3 cut(s)	82, 417, 831
BseMII	CTCAG	3 cut(s)	453, 828, 1004
BseNI	ACTGG	4 cut(s)	370, 774, 931, 952
BseXI	GCAGC	9 cut(s)	143, 149, 261, 301, 382, 478, 884, 1151, 1175
BsgI	GTGCAG	2 cut(s)	608, 882
Bsh1236I	CGCG	1 cut(s)	173
BshFI	GGCC	2 cut(s)	188, 416
BsiHKAI	GWGCWC	1 cut(s)	430
BsiSI	CCGG	2 cut(s)	1062, 1226
BslI	CCNNNNNNNGG	2 cut(s)	383, 902
BsmAI	GTCTC	1 cut(s)	993
BsmI	GAATGC	1 cut(s)	102
BsnI	GGCC	2 cut(s)	188, 416
Bsp1286I	GDGCHC	1 cut(s)	430
Bsp143I	GATC	5 cut(s)	442, 581, 1012, 1185, 1213
Bsp19I	CCATGG	1 cut(s)	177
BspANI	GGCC	2 cut(s)	188, 416
BspCNI	CTCAG	3 cut(s)	452, 827, 1003
BspFNI	CGCG	1 cut(s)	173
BspHI	TCATGA	1 cut(s)	804
BspLI	GGNNCC	3 cut(s)	894, 1014, 1187
BspMAI	CTGCAG	2 cut(s)	319, 972
BspPI	GGATC	5 cut(s)	1007, 1020, 1180, 1193, 1208
BsrDI	GCAATG	3 cut(s)	82, 417, 831
BsrFI	RCCGGY	1 cut(s)	1225
BsrI	ACTGG	4 cut(s)	370, 774, 931, 952
BssAI	RCCGGY	1 cut(s)	1225
BssECI	CCNNGG	2 cut(s)	177, 1179
BssMI	GATC	5 cut(s)	442, 581, 1012, 1185, 1213
BssNI	GRCGYC	1 cut(s)	41
BssSI	CACGAG	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	177
Bst2BI	CACGAG	1 cut(s)	351
Bst2UI	CCWGG	2 cut(s)	765, 1180
Bst4CI	ACNGT	3 cut(s)	303, 309, 538
BstACI	GRCGYC	1 cut(s)	41
BstC8I	GCNNGC	3 cut(s)	526, 591, 659
BstDEI	CTNAG	3 cut(s)	439, 814, 990
BstDSI	CCRYGG	1 cut(s)	177
BstEII	GGTNACC	1 cut(s)	547
BstF5I	GGATG	3 cut(s)	295, 700, 1054
BstFNI	CGCG	1 cut(s)	173
BstHHI	GCGC	2 cut(s)	131, 175
BstKTI	GATC	5 cut(s)	445, 584, 1015, 1188, 1216
BstMAI	GTCTC	1 cut(s)	993
BstMBI	GATC	5 cut(s)	442, 581, 1012, 1185, 1213
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 219, 246, 599, 869, 881, 890
BstNI	CCWGG	2 cut(s)	765, 1180
BstNSI	RCATGY	1 cut(s)	102
BstPI	GGTNACC	1 cut(s)	547
BstSCI	CCNGG	2 cut(s)	763, 1178
BstSFI	CTRYAG	2 cut(s)	315, 968
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	9 cut(s)	143, 149, 261, 301, 382, 478, 884, 1151, 1175
BstV2I	GAAGAC	2 cut(s)	900, 1121
BstX2I	RGATCY	3 cut(s)	442, 1012, 1185
BstYI	RGATCY	3 cut(s)	442, 1012, 1185
BsuRI	GGCC	2 cut(s)	188, 416
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	3 cut(s)	295, 700, 1054
BtsIMutI	CAGTG	3 cut(s)	299, 591, 924
Cac8I	GCNNGC	3 cut(s)	526, 591, 659
CaiI	CAGNNNCTG	3 cut(s)	485, 821, 926
CciI	TCATGA	1 cut(s)	804
CfoI	GCGC	2 cut(s)	131, 175
Cfr10I	RCCGGY	1 cut(s)	1225
Csp6I	GTAC	2 cut(s)	114, 363
CviAII	CATG	6 cut(s)	99, 178, 241, 260, 805, 1073
CviQI	GTAC	2 cut(s)	114, 363
DdeI	CTNAG	3 cut(s)	439, 814, 990
DpnI	GATC	5 cut(s)	444, 583, 1014, 1187, 1215
DpnII	GATC	5 cut(s)	442, 581, 1012, 1185, 1213
DrdI	GACNNNNNNGTC	1 cut(s)	43
DseDI	GACNNNNNNGTC	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	186
EciI	GGCGGA	1 cut(s)	1025
Eco130I	CCWWGG	1 cut(s)	177
Eco57I	CTGAAG	1 cut(s)	674
Eco91I	GGTNACC	1 cut(s)	547
EcoO65I	GGTNACC	1 cut(s)	547
EcoRII	CCWGG	2 cut(s)	763, 1178
EcoT14I	CCWWGG	1 cut(s)	177
EcoT22I	ATGCAT	2 cut(s)	82, 104
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	6 cut(s)	102, 181, 244, 263, 808, 1076
FalI	AAGNNNNNCTT	1 cut(s)	1229
FatI	CATG	6 cut(s)	98, 177, 240, 259, 804, 1072
FauI	CCCGC	3 cut(s)	333, 415, 1159
FokI	GGATG	3 cut(s)	302, 707, 1061
FspBI	CTAG	2 cut(s)	359, 516
GlaI	GCGC	2 cut(s)	130, 174
GsuI	CTGGAG	3 cut(s)	832, 948, 969
HaeIII	GGCC	2 cut(s)	188, 416
HapII	CCGG	2 cut(s)	1062, 1226
HhaI	GCGC	2 cut(s)	131, 175
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	6 cut(s)	102, 181, 244, 263, 808, 1076
Hin6I	GCGC	2 cut(s)	129, 173
HinP1I	GCGC	2 cut(s)	129, 173
HincII	GTYRAC	2 cut(s)	628, 1153
HindII	GTYRAC	2 cut(s)	628, 1153
HindIII	AAGCTT	1 cut(s)	1238
HinfI	GANTC	5 cut(s)	349, 373, 404, 812, 1069
HpaII	CCGG	2 cut(s)	1062, 1226
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	5 cut(s)	257, 356, 628, 979, 1153
Hpy188I	TCNGA	3 cut(s)	442, 748, 1113
Hpy188III	TCNNGA	6 cut(s)	516, 692, 805, 816, 1172, 1221
Hpy8I	GTNNAC	5 cut(s)	257, 356, 628, 979, 1153
Hpy99I	CGWCG	3 cut(s)	40, 43, 46
HpyAV	CCTTC	7 cut(s)	117, 178, 563, 698, 713, 1026, 1202
HpyCH4III	ACNGT	3 cut(s)	303, 309, 538
HpyCH4IV	ACGT	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 219, 246, 599, 869, 881, 890
HpyF3I	CTNAG	3 cut(s)	439, 814, 990
HpySE526I	ACGT	1 cut(s)	41
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	6 cut(s)	102, 181, 244, 263, 808, 1076
HspAI	GCGC	2 cut(s)	129, 173
Kzo9I	GATC	5 cut(s)	442, 581, 1012, 1185, 1213
LmnI	GCTCC	3 cut(s)	126, 170, 898
Lsp1109I	GCAGC	9 cut(s)	143, 149, 261, 301, 382, 478, 884, 1151, 1175
LweI	GCATC	2 cut(s)	280, 685
MaeI	CTAG	2 cut(s)	359, 516
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	4 cut(s)	303, 547, 997, 1075
MalI	GATC	5 cut(s)	444, 583, 1014, 1187, 1215
MboI	GATC	5 cut(s)	442, 581, 1012, 1185, 1213
MboII	GAAGA	3 cut(s)	878, 900, 1126
MflI	RGATCY	3 cut(s)	442, 1012, 1185
MhlI	GDGCHC	1 cut(s)	430
MluCI	AATT	6 cut(s)	30, 51, 333, 611, 741, 900
MlyI	GAGTC	2 cut(s)	343, 806
Mph1103I	ATGCAT	2 cut(s)	82, 104
MseI	TTAA	6 cut(s)	195, 234, 282, 432, 1124, 1249
MslI	CAYNNNNRTG	1 cut(s)	75
MspA1I	CMGCKG	4 cut(s)	162, 252, 461, 1166
MspI	CCGG	2 cut(s)	1062, 1226
MspR9I	CCNGG	2 cut(s)	765, 1180
Mva1269I	GAATGC	1 cut(s)	102
MvaI	CCWGG	2 cut(s)	765, 1180
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	7 cut(s)	11, 219, 246, 599, 869, 881, 890
NcoI	CCATGG	1 cut(s)	177
NdeII	GATC	5 cut(s)	442, 581, 1012, 1185, 1213
NlaIII	CATG	6 cut(s)	102, 181, 244, 263, 808, 1076
NlaIV	GGNNCC	3 cut(s)	894, 1014, 1187
NmuCI	GTSAC	1 cut(s)	1075
NsiI	ATGCAT	2 cut(s)	82, 104
NspI	RCATGY	1 cut(s)	102
PagI	TCATGA	1 cut(s)	804
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PctI	GAATGC	1 cut(s)	102
PfeI	GAWTC	3 cut(s)	373, 404, 1069
PflFI	GACNNNGTC	2 cut(s)	40, 43
PleI	GAGTC	2 cut(s)	343, 806
PpsI	GAGTC	2 cut(s)	343, 806
PsiI	TTATAA	1 cut(s)	455
Psp6I	CCWGG	2 cut(s)	763, 1178
PspEI	GGTNACC	1 cut(s)	547
PspGI	CCWGG	2 cut(s)	763, 1178
PspN4I	GGNNCC	3 cut(s)	894, 1014, 1187
PstI	CTGCAG	2 cut(s)	319, 972
PstNI	CAGNNNCTG	3 cut(s)	485, 821, 926
PsuI	RGATCY	3 cut(s)	442, 1012, 1185
PsyI	GACNNNGTC	2 cut(s)	40, 43
PvuII	CAGCTG	2 cut(s)	162, 461
RsaI	GTAC	2 cut(s)	115, 364
RsaNI	GTAC	2 cut(s)	114, 363
RseI	CAYNNNNRTG	1 cut(s)	75
SaqAI	TTAA	6 cut(s)	195, 234, 282, 432, 1124, 1249
Sau3AI	GATC	5 cut(s)	442, 581, 1012, 1185, 1213
SbfI	CCTGCAGG	1 cut(s)	972
SchI	GAGTC	2 cut(s)	343, 806
ScrFI	CCNGG	2 cut(s)	765, 1180
SdaI	CCTGCAGG	1 cut(s)	972
SduI	GDGCHC	1 cut(s)	430
SfaNI	GCATC	2 cut(s)	280, 685
SfcI	CTRYAG	2 cut(s)	315, 968
SmiMI	CAYNNNNRTG	1 cut(s)	75
SmlI	CTYRAG	2 cut(s)	294, 1199
SmoI	CTYRAG	2 cut(s)	294, 1199
Sse8387I	CCTGCAGG	1 cut(s)	972
Sse9I	AATT	6 cut(s)	30, 51, 333, 611, 741, 900
SspI	AATATT	2 cut(s)	943, 1032
SspMI	CTAG	2 cut(s)	359, 516
StyD4I	CCNGG	2 cut(s)	763, 1178
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	3 cut(s)	303, 309, 538
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	1 cut(s)	35
TaqII	GACCGA	1 cut(s)	145
TasI	AATT	6 cut(s)	30, 51, 333, 611, 741, 900
TauI	GCSGC	3 cut(s)	216, 219, 222
TfiI	GAWTC	3 cut(s)	373, 404, 1069
Tru1I	TTAA	6 cut(s)	195, 234, 282, 432, 1124, 1249
Tru9I	TTAA	6 cut(s)	195, 234, 282, 432, 1124, 1249
TscAI	CASTG	3 cut(s)	306, 591, 931
TseFI	GTSAC	1 cut(s)	1075
TseI	GCWGC	9 cut(s)	131, 162, 249, 314, 395, 491, 872, 1139, 1163
Tsp45I	GTSAC	1 cut(s)	1075
TspDTI	ATGAA	2 cut(s)	821, 1061
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	3 cut(s)	306, 591, 931
Tth111I	GACNNNGTC	2 cut(s)	40, 43
XapI	RAATTY	1 cut(s)	741
XbaI	TCTAGA	1 cut(s)	515
XceI	RCATGY	1 cut(s)	102
XspI	CTAG	2 cut(s)	359, 516
ZraI	GACGTC	1 cut(s)	42
Zsp2I	ATGCAT	2 cut(s)	82, 104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.