Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0012521

Physical Location & Seq

Genomic Coordinates Reverse (-)

35197605 .. 35201094

Gene Structure 3490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG317800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCTACTTTGGCGAACCCGAACGAGCTAATTTCGACGACGTCGTCCTCAATTCCCACCGCATTTCACCACCACAACGCATTGACTTCCCCAAGAACATGCATTCCTCTGGGTACCAAAAGAAGGAGCGCAGTGAAACGACATCGTTTCGGGTCGGTCAGCTGCTCCTTCGCGCCCATGGAAACGGCCAAGATTAAGGTCGTTGGGGTCGGCGGCGGCGGCAACAATGCCGTTAATCGCATGATTGGCAGCGGTTTACATGGTGTTGATTTCTATGCGATTAACACGGATGCTCAAGCACTGTTACAGTCGGCTGCAGAGAACCCGCTTCAAATTGGAGAGCTTTTGACTCGTGGACTAGGTACTGGTGGGAATCCACTTTTGGGGGAACAAGCTGCTGAGGAATCAAAAGAGGCCATTGCGGGTGCTCTTAAAGGCTCAGATCTCGTATTTATAACAGCTGGTATGGGTGGAGGCACAGGGTCTGGTGCTGCCCCTGTTGTTGCACAAATATCTAGAGAGGCAGGCTATTTGACTGTTGGTGTGGTTACCTACCCTTTCAGCTTTGAAGGGCGTAAAAGATCAGTGCAGGCATTGGAGGCTATTGAAAAGTTGCAGAAAAATGTTGACACTCTTATAGTGATACCCAATGACCGCCTGCTTGATATTGCTGATGAGCAGACACCCCTTCAGGATGCTTTCCTTCTTGCTGATGATGTTTTGCGTCAAGGAGTGCAAGGAATTTCTGACATAATCACAATACCTGGACTGGTAAATGTGGATTTTGCTGATGTAAAGGCAGTCATGAAGGACTCAGGAACCGCAATGCTTGGAGTAGGGGTCTCCTCTAGCAAAAATCGTGCAGAAGAAGCAGCTGAACAGGCGACTTTGGCTCCGCTGATTGGGTCTTCAATACAATCAGCCACTGGAGTAGTGTATAATATCACTGGAGGAAAGGACATAACCCTGCAGGAAGTGAACAGAGTGTCTCAGGTACTTCAAAATTTTGTTTTCTTCAATCCTAAATTTTCTGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009637 GO:0009657 GO:0009658 GO:0009902 GO:0009987 GO:0010020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019750 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

346

Amino Acids

36.16

Weight (kDa)

5.49

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tubulin	PF00091	64 - 224	3.8e-49	Tubulin/FtsZ family, GTPase domain
FtsZ_C	PF12327	273 - 337	8.1e-17	FtsZ family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55280
fragaria_vesca	FvH4_3g23650 FvH4_3g23650
malus_domestica	MD03G1192200.v1.1 MD11G1208400.v1.1 MD17G1254500.v1.1
prunus_persica	Prupe.4G225000_v2.0.a1 Prupe.4G225000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0041711
rosa_laevigata	RLG00000034091
rosa_multiflora	Rmu_sc0000861.1_g000027 Rmu_sc0005255.1_g000021
rosa_roxburghii	Rroxscaffold_1G00038800
rosa_rugosa	Rorug05G0195100
rosa_samantha	Rh5AG280100 Rh5BG285600 Rh5CG317800 Rh5DG294400
rosa_wichuraiana	Rw5G026390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	455
AasI	GACNNNNNNGTC	1 cut(s)	43
AatII	GACGTC	1 cut(s)	44
Acc65I	GGTACC	1 cut(s)	113
AccB1I	GGYRCC	1 cut(s)	113
AccII	CGCG	1 cut(s)	173
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	3 cut(s)	741, 1003, 1025
AcuI	CTGAAG	1 cut(s)	674
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	3 cut(s)	115, 364, 996
AfiI	CCNNNNNNNGG	3 cut(s)	123, 383, 902
AgsI	TTSAA	6 cut(s)	332, 569, 608, 912, 1001, 1018
AjnI	CCWGG	1 cut(s)	763
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AloI	GAACNNNNNNTCC	2 cut(s)	88, 120
AluBI	AGCT	7 cut(s)	28, 162, 343, 395, 461, 564, 875
AluI	AGCT	7 cut(s)	28, 162, 343, 395, 461, 564, 875
Alw21I	GWGCWC	1 cut(s)	430
Alw26I	GTCTC	2 cut(s)	847, 993
AlwNI	CAGNNNCTG	2 cut(s)	485, 926
AoxI	GGCC	2 cut(s)	186, 414
ApeKI	GCWGC	6 cut(s)	162, 249, 314, 395, 491, 872
ApoI	RAATTY	3 cut(s)	741, 1003, 1025
Asp718I	GGTACC	1 cut(s)	113
AspLEI	GCGC	2 cut(s)	131, 175
AsuHPI	GGTGA	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	113
BauI	CACGAG	1 cut(s)	351
BbsI	GAAGAC	1 cut(s)	900
Bbv12I	GWGCWC	1 cut(s)	430
BbvCI	CCTCAGC	1 cut(s)	399
BbvI	GCAGC	6 cut(s)	149, 261, 301, 382, 478, 884
BceAI	ACGGC	2 cut(s)	201, 215
BciT130I	CCWGG	1 cut(s)	765
BcoDI	GTCTC	2 cut(s)	847, 993
BfaI	CTAG	3 cut(s)	359, 516, 849
BfmI	CTRYAG	2 cut(s)	315, 968
BglII	AGATCT	1 cut(s)	442
BisI	GCNGC	9 cut(s)	163, 214, 217, 220, 250, 315, 396, 492, 873
BlsI	GCNGC	9 cut(s)	164, 215, 218, 221, 251, 316, 397, 493, 874
Bme1390I	CCNGG	1 cut(s)	765
BmiI	GGNNCC	3 cut(s)	115, 820, 894
BmrFI	CCNGG	1 cut(s)	765
BmsI	GCATC	2 cut(s)	280, 685
BpiI	GAAGAC	1 cut(s)	900
BpmI	CTGGAG	2 cut(s)	948, 969
Bpu10I	CCTNAGC	1 cut(s)	399
BpuEI	CTTGAG	1 cut(s)	279
BsaHI	GRCGYC	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	847
BsaJI	CCNNGG	1 cut(s)	177
BsaXI	ACNNNNNCTCC	4 cut(s)	825, 855, 877, 907
Bsc4I	CCNNNNNNNGG	3 cut(s)	123, 383, 902
Bse1I	ACTGG	4 cut(s)	370, 774, 931, 952
Bse3DI	GCAATG	2 cut(s)	417, 831
BseBI	CCWGG	1 cut(s)	765
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	2 cut(s)	295, 700
BseLI	CCNNNNNNNGG	3 cut(s)	123, 383, 902
BseMI	GCAATG	2 cut(s)	417, 831
BseMII	CTCAG	4 cut(s)	390, 453, 828, 1004
BseNI	ACTGG	4 cut(s)	370, 774, 931, 952
BseRI	GAGGAG	1 cut(s)	835
BseXI	GCAGC	6 cut(s)	149, 261, 301, 382, 478, 884
BsgI	GTGCAG	2 cut(s)	608, 882
Bsh1236I	CGCG	1 cut(s)	173
BshFI	GGCC	2 cut(s)	188, 416
BshNI	GGYRCC	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	430
BslI	CCNNNNNNNGG	3 cut(s)	123, 383, 902
BsmAI	GTCTC	2 cut(s)	847, 993
BsmI	GAATGC	1 cut(s)	102
BsnI	GGCC	2 cut(s)	188, 416
Bso31I	GGTCTC	1 cut(s)	847
Bsp1286I	GDGCHC	1 cut(s)	430
Bsp143I	GATC	2 cut(s)	442, 581
Bsp19I	CCATGG	1 cut(s)	177
BspANI	GGCC	2 cut(s)	188, 416
BspCNI	CTCAG	4 cut(s)	391, 452, 827, 1003
BspFNI	CGCG	1 cut(s)	173
BspHI	TCATGA	1 cut(s)	804
BspLI	GGNNCC	3 cut(s)	115, 820, 894
BspMAI	CTGCAG	2 cut(s)	319, 972
BspT107I	GGYRCC	1 cut(s)	113
BspTNI	GGTCTC	1 cut(s)	847
BsrDI	GCAATG	2 cut(s)	417, 831
BsrI	ACTGG	4 cut(s)	370, 774, 931, 952
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	2 cut(s)	442, 581
BssNI	GRCGYC	1 cut(s)	41
BssSI	CACGAG	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	177
Bst2BI	CACGAG	1 cut(s)	351
Bst2UI	CCWGG	1 cut(s)	765
Bst4CI	ACNGT	3 cut(s)	303, 309, 538
Bst6I	CTCTTC	1 cut(s)	1029
BstACI	GRCGYC	1 cut(s)	41
BstC8I	GCNNGC	3 cut(s)	526, 591, 659
BstDEI	CTNAG	4 cut(s)	399, 439, 814, 990
BstDSI	CCRYGG	1 cut(s)	177
BstEII	GGTNACC	1 cut(s)	547
BstF5I	GGATG	2 cut(s)	295, 700
BstFNI	CGCG	1 cut(s)	173
BstHHI	GCGC	2 cut(s)	131, 175
BstKTI	GATC	2 cut(s)	445, 584
BstMAI	GTCTC	2 cut(s)	847, 993
BstMBI	GATC	2 cut(s)	442, 581
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 219, 246, 599, 869, 881, 890
BstNI	CCWGG	1 cut(s)	765
BstNSI	RCATGY	1 cut(s)	102
BstPI	GGTNACC	1 cut(s)	547
BstSCI	CCNGG	1 cut(s)	763
BstSFI	CTRYAG	2 cut(s)	315, 968
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	6 cut(s)	149, 261, 301, 382, 478, 884
BstV2I	GAAGAC	1 cut(s)	900
BstX2I	RGATCY	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	442
BsuRI	GGCC	2 cut(s)	188, 416
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	2 cut(s)	295, 700
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	5 cut(s)	138, 299, 591, 924, 945
Cac8I	GCNNGC	3 cut(s)	526, 591, 659
CaiI	CAGNNNCTG	2 cut(s)	485, 926
CciI	TCATGA	1 cut(s)	804
CfoI	GCGC	2 cut(s)	131, 175
CseI	GACGC	1 cut(s)	713
Csp6I	GTAC	3 cut(s)	114, 363, 995
CviAII	CATG	5 cut(s)	99, 178, 241, 260, 805
CviQI	GTAC	3 cut(s)	114, 363, 995
DdeI	CTNAG	4 cut(s)	399, 439, 814, 990
DpnI	GATC	2 cut(s)	444, 583
DpnII	GATC	2 cut(s)	442, 581
DrdI	GACNNNNNNGTC	1 cut(s)	43
DseDI	GACNNNNNNGTC	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	1 cut(s)	1029
EarI	CTCTTC	1 cut(s)	1029
Eco130I	CCWWGG	1 cut(s)	177
Eco31I	GGTCTC	1 cut(s)	847
Eco57I	CTGAAG	1 cut(s)	674
Eco91I	GGTNACC	1 cut(s)	547
EcoO65I	GGTNACC	1 cut(s)	547
EcoRII	CCWGG	1 cut(s)	763
EcoT14I	CCWWGG	1 cut(s)	177
EcoT22I	ATGCAT	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	5 cut(s)	102, 181, 244, 263, 808
FatI	CATG	5 cut(s)	98, 177, 240, 259, 804
FauI	CCCGC	2 cut(s)	333, 415
Fnu4HI	GCNGC	9 cut(s)	163, 214, 217, 220, 250, 315, 396, 492, 873
FokI	GGATG	2 cut(s)	302, 707
Fsp4HI	GCNGC	9 cut(s)	163, 214, 217, 220, 250, 315, 396, 492, 873
FspBI	CTAG	3 cut(s)	359, 516, 849
GlaI	GCGC	2 cut(s)	130, 174
GluI	GCNGC	9 cut(s)	163, 214, 217, 220, 250, 315, 396, 492, 873
GsuI	CTGGAG	2 cut(s)	948, 969
HaeIII	GGCC	2 cut(s)	188, 416
HgaI	GACGC	1 cut(s)	713
HhaI	GCGC	2 cut(s)	131, 175
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	5 cut(s)	102, 181, 244, 263, 808
Hin6I	GCGC	2 cut(s)	129, 173
HinP1I	GCGC	2 cut(s)	129, 173
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HinfI	GANTC	4 cut(s)	349, 373, 404, 812
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	4 cut(s)	257, 356, 628, 979
Hpy188I	TCNGA	3 cut(s)	442, 748, 1033
Hpy188III	TCNNGA	4 cut(s)	516, 692, 805, 816
Hpy8I	GTNNAC	4 cut(s)	257, 356, 628, 979
Hpy99I	CGWCG	3 cut(s)	40, 43, 46
HpyAV	CCTTC	6 cut(s)	117, 178, 563, 698, 713, 802
HpyCH4III	ACNGT	3 cut(s)	303, 309, 538
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	8 cut(s)	102, 317, 506, 589, 616, 736, 863, 970
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 219, 246, 599, 869, 881, 890
HpyF3I	CTNAG	4 cut(s)	399, 439, 814, 990
HpySE526I	ACGT	1 cut(s)	41
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	5 cut(s)	102, 181, 244, 263, 808
HspAI	GCGC	2 cut(s)	129, 173
KpnI	GGTACC	1 cut(s)	117
Kzo9I	GATC	2 cut(s)	442, 581
LmnI	GCTCC	3 cut(s)	126, 170, 898
Lsp1109I	GCAGC	6 cut(s)	149, 261, 301, 382, 478, 884
LweI	GCATC	2 cut(s)	280, 685
MaeI	CTAG	3 cut(s)	359, 516, 849
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	2 cut(s)	303, 547
MalI	GATC	2 cut(s)	444, 583
MboI	GATC	2 cut(s)	442, 581
MboII	GAAGA	3 cut(s)	878, 900, 1006
MflI	RGATCY	1 cut(s)	442
MhlI	GDGCHC	1 cut(s)	430
MluCI	AATT	6 cut(s)	30, 51, 333, 741, 1003, 1025
MlyI	GAGTC	2 cut(s)	343, 806
MnlI	CCTC	9 cut(s)	58, 117, 394, 406, 467, 514, 592, 856, 944
Mph1103I	ATGCAT	1 cut(s)	104
MseI	TTAA	4 cut(s)	195, 234, 282, 432
MspA1I	CMGCKG	5 cut(s)	162, 252, 461, 875, 898
MspR9I	CCNGG	1 cut(s)	765
Mva1269I	GAATGC	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	765
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	7 cut(s)	11, 219, 246, 599, 869, 881, 890
NcoI	CCATGG	1 cut(s)	177
NdeII	GATC	2 cut(s)	442, 581
NlaIII	CATG	5 cut(s)	102, 181, 244, 263, 808
NlaIV	GGNNCC	3 cut(s)	115, 820, 894
NsiI	ATGCAT	1 cut(s)	104
NspI	RCATGY	1 cut(s)	102
PagI	TCATGA	1 cut(s)	804
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PctI	GAATGC	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	373, 404
PflFI	GACNNNGTC	2 cut(s)	40, 43
PkrI	GCNGC	9 cut(s)	164, 215, 218, 221, 251, 316, 397, 493, 874
PleI	GAGTC	2 cut(s)	343, 806
PpsI	GAGTC	2 cut(s)	343, 806
PsiI	TTATAA	1 cut(s)	455
Psp6I	CCWGG	1 cut(s)	763
PspEI	GGTNACC	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	763
PspN4I	GGNNCC	3 cut(s)	115, 820, 894
PstI	CTGCAG	2 cut(s)	319, 972
PstNI	CAGNNNCTG	2 cut(s)	485, 926
PsuI	RGATCY	1 cut(s)	442
PsyI	GACNNNGTC	2 cut(s)	40, 43
PvuII	CAGCTG	3 cut(s)	162, 461, 875
RsaI	GTAC	3 cut(s)	115, 364, 996
RsaNI	GTAC	3 cut(s)	114, 363, 995
SaqAI	TTAA	4 cut(s)	195, 234, 282, 432
SatI	GCNGC	9 cut(s)	163, 214, 217, 220, 250, 315, 396, 492, 873
Sau3AI	GATC	2 cut(s)	442, 581
SbfI	CCTGCAGG	1 cut(s)	972
SchI	GAGTC	2 cut(s)	343, 806
ScrFI	CCNGG	1 cut(s)	765
SdaI	CCTGCAGG	1 cut(s)	972
SduI	GDGCHC	1 cut(s)	430
SfaNI	GCATC	2 cut(s)	280, 685
SfcI	CTRYAG	2 cut(s)	315, 968
SmlI	CTYRAG	1 cut(s)	294
SmoI	CTYRAG	1 cut(s)	294
Sse8387I	CCTGCAGG	1 cut(s)	972
Sse9I	AATT	6 cut(s)	30, 51, 333, 741, 1003, 1025
SspMI	CTAG	3 cut(s)	359, 516, 849
StyD4I	CCNGG	1 cut(s)	763
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	3 cut(s)	303, 309, 538
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	1 cut(s)	35
TaqII	GACCGA	1 cut(s)	145
TasI	AATT	6 cut(s)	30, 51, 333, 741, 1003, 1025
TauI	GCSGC	3 cut(s)	216, 219, 222
TfiI	GAWTC	2 cut(s)	373, 404
Tru1I	TTAA	4 cut(s)	195, 234, 282, 432
Tru9I	TTAA	4 cut(s)	195, 234, 282, 432
TscAI	CASTG	5 cut(s)	138, 306, 591, 931, 952
TseI	GCWGC	6 cut(s)	162, 249, 314, 395, 491, 872
TspDTI	ATGAA	1 cut(s)	821
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	5 cut(s)	138, 306, 591, 931, 952
Tth111I	GACNNNGTC	2 cut(s)	40, 43
XapI	RAATTY	3 cut(s)	741, 1003, 1025
XbaI	TCTAGA	1 cut(s)	515
XceI	RCATGY	1 cut(s)	102
XspI	CTAG	3 cut(s)	359, 516, 849
ZraI	GACGTC	1 cut(s)	42
Zsp2I	ATGCAT	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.