Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012521

Physical Location & Seq

Genomic Coordinates Reverse (-)

16741398 .. 16744697

Gene Structure 3300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g23650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGCTACTACTACCTGGGCGAACCCGAACGACCTCATCTCCACGTCTTCCTCAATTCCCACCGCATTTCACCACAACACCCTCAGAACCTGCACTATTCCTCTCCCCACCAAAACAAGGACCGCTCTTAAACGACACCGTGTCAGCTGCTCCTTCGCCCCCATGGAATCCGCCAAGATTAAGGTCGTCGGCGTCGGCGGCGGTGGCAACAATGCCGTTAATCGCATGATTGGCAGCGGTTTACATGGTGTTGACTTCTATGCAATAAACACGGATGCTCAAGCATTGTTGCAGTCGGCTGCAGAGAACCCGCTTCAAATTGGAGAGCTTTTGACTCGTGGACTAGGTACTGGTGGGAATCCACTTCTGGGGGAACAAGCTGCTGAGGAATCAAAAGAGGCCATTGCGGGTGCTCTTAAGGGCTCAGATCTCGTCTTTATAACTGCTGGTATGGGTGGAGGCACAGGGTCTGGTGCTGCCCCTGTTGTTGCACAAATATCTAGAGAGGCAGGTTATTTGACAGTTGGTGTGGTTACCTATCCTTTTAGCTTTGAAGGGCGTAAAAGATCAGTGCAGGCATTGGAGGCTATTGAAAAGTTGCAGAAAAATGTTGACACTCTTATAGTGATACCCAATGATCGCCTGCTTGATATTGCTGATGAGCAGACACCCCTTCAGGATGCTTTCCTTCTTGCTGATGATGTTTTGCGTCAAGGAGTGCAAGGAATTTCTGACATAATCACAATACCTGGACTGGTAAATGTGGATTTTGCAGATGTAAAGGCAGTCATGAAAGACTCAGGAACTGCAATGCTTGGAGTAGGGGTTTCCTCCAGCAAAAATCGTGCAGAAGAAGCAGCTGAACAGGCAACTTTGGCTCCGCTGATTGGGTCTTCAATACAATCTGCCACTGGAGTAGTGTATAATATCACTGGAGGAAAGGACATAACCCTGCAGGAAGTGAACAGAGTGTCTCAGGTTGTAACAAGTTTGGCAGATCCTTCTGCTAACATAATCTTTGGAGCTGTTGTGGATGACCGCTACACTGGAGAGATCCATGTGACTATTATTGCAACAGGCTTTTCTCAGTCCTTCCAGAAGACACTACTAACAGACCCCAAAGCAGCAAGGCTGGTTGACAAAGTTGCAGCGGGTCAAGAAACCAGGGGAATCCCCCTTCCCCTCAAGTCATCCACCACTCCATCAAGACCGGCTACAAGAAAGCTTTTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009637 GO:0009657 GO:0009658 GO:0009902 GO:0009987 GO:0010020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019750 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042802 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0043621 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

FtsZ_C Tubulin

Protein Analysis

412

Amino Acids

42.99

Weight (kDa)

6.02

Isoelectric Point (pI)

32.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tubulin	PF00091	59 - 219	5.7e-49	Tubulin/FtsZ family, GTPase domain
FtsZ_C	PF12327	268 - 361	7.2e-30	FtsZ family, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012521)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55280
fragaria_vesca	FvH4_3g23650 FvH4_3g23650
malus_domestica	MD03G1192200.v1.1 MD11G1208400.v1.1 MD17G1254500.v1.1
prunus_persica	Prupe.4G225000_v2.0.a1 Prupe.4G225000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0041711
rosa_laevigata	RLG00000034091
rosa_multiflora	Rmu_sc0000861.1_g000027 Rmu_sc0005255.1_g000021
rosa_roxburghii	Rroxscaffold_1G00038800
rosa_rugosa	Rorug05G0195100
rosa_samantha	Rh5AG280100 Rh5BG285600 Rh5CG317800 Rh5DG294400
rosa_wichuraiana	Rw5G026390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	440
Acc36I	ACCTGC	2 cut(s)	98, 500
AccBSI	CCGCTC	1 cut(s)	125
AclWI	GGATC	2 cut(s)	992, 1048
AcsI	RAATTY	1 cut(s)	726
AcuI	CTGAAG	1 cut(s)	659
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	3 cut(s)	117, 368, 887
AflII	CTTAAG	1 cut(s)	416
AgsI	TTSAA	4 cut(s)	317, 554, 593, 897
AhdI	GACNNNNNGTC	1 cut(s)	140
AjiI	CACGTC	1 cut(s)	45
AjnI	CCWGG	3 cut(s)	14, 748, 1163
AluBI	AGCT	7 cut(s)	147, 328, 380, 549, 860, 1025, 1225
AluI	AGCT	7 cut(s)	147, 328, 380, 549, 860, 1025, 1225
Alw21I	GWGCWC	1 cut(s)	415
Alw26I	GTCTC	1 cut(s)	978
AlwI	GGATC	2 cut(s)	992, 1048
AlwNI	CAGNNNCTG	3 cut(s)	90, 470, 806
AoxI	GGCC	1 cut(s)	399
ApeKI	GCWGC	8 cut(s)	147, 234, 299, 380, 476, 857, 1124, 1148
ApoI	RAATTY	1 cut(s)	726
AspS9I	GGNCC	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	120
BanII	GRGCYC	1 cut(s)	425
BauI	CACGAG	1 cut(s)	336
BbsI	GAAGAC	3 cut(s)	39, 885, 1106
Bbv12I	GWGCWC	1 cut(s)	415
BbvCI	CCTCAGC	1 cut(s)	384
BbvI	GCAGC	8 cut(s)	134, 246, 286, 367, 463, 869, 1136, 1160
BccI	CCATC	1 cut(s)	1210
BceAI	ACGGC	1 cut(s)	200
BciT130I	CCWGG	3 cut(s)	16, 750, 1165
BcoDI	GTCTC	1 cut(s)	978
BfaI	CTAG	2 cut(s)	344, 501
BfmI	CTRYAG	2 cut(s)	300, 953
BfrI	CTTAAG	1 cut(s)	416
BfuAI	ACCTGC	2 cut(s)	98, 500
BglII	AGATCT	1 cut(s)	427
BisI	GCNGC	9 cut(s)	148, 199, 235, 300, 381, 477, 858, 1125, 1149
BlsI	GCNGC	9 cut(s)	149, 200, 236, 301, 382, 478, 859, 1126, 1150
Bme1390I	CCNGG	3 cut(s)	16, 750, 1165
Bme18I	GGWCC	1 cut(s)	120
BmeRI	GACNNNNNGTC	1 cut(s)	140
BmgBI	CACGTC	1 cut(s)	45
BmgT120I	GGNCC	1 cut(s)	120
BmiI	GGNNCC	1 cut(s)	879
BmrFI	CCNGG	3 cut(s)	16, 750, 1165
BmsI	GCATC	2 cut(s)	265, 670
BpiI	GAAGAC	3 cut(s)	39, 885, 1106
BpmI	CTGGAG	4 cut(s)	817, 933, 954, 1068
Bpu10I	CCTNAGC	1 cut(s)	384
BpuEI	CTTGAG	2 cut(s)	264, 1169
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	3 cut(s)	15, 162, 1164
BsaXI	ACNNNNNCTCC	8 cut(s)	23, 53, 810, 840, 862, 892, 1014, 1044
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 368, 887
Bse118I	RCCGGY	1 cut(s)	1210
Bse1I	ACTGG	5 cut(s)	355, 759, 916, 937, 1051
Bse3DI	GCAATG	2 cut(s)	402, 816
BseBI	CCWGG	3 cut(s)	16, 750, 1165
BseDI	CCNNGG	3 cut(s)	15, 162, 1164
BseGI	GGATG	4 cut(s)	280, 685, 1039, 1190
BseLI	CCNNNNNNNGG	3 cut(s)	117, 368, 887
BseMI	GCAATG	2 cut(s)	402, 816
BseMII	CTCAG	6 cut(s)	97, 375, 438, 813, 989, 1100
BseNI	ACTGG	5 cut(s)	355, 759, 916, 937, 1051
BseXI	GCAGC	8 cut(s)	134, 246, 286, 367, 463, 869, 1136, 1160
BsgI	GTGCAG	3 cut(s)	76, 593, 867
BshFI	GGCC	1 cut(s)	401
BsiHKAI	GWGCWC	1 cut(s)	415
BsiSI	CCGG	1 cut(s)	1211
BslI	CCNNNNNNNGG	3 cut(s)	117, 368, 887
BsmAI	GTCTC	1 cut(s)	978
BsnI	GGCC	1 cut(s)	401
Bsp1286I	GDGCHC	2 cut(s)	415, 425
Bsp143I	GATC	5 cut(s)	427, 566, 637, 997, 1053
Bsp19I	CCATGG	1 cut(s)	162
BspANI	GGCC	1 cut(s)	401
BspCNI	CTCAG	6 cut(s)	96, 376, 437, 812, 988, 1099
BspHI	TCATGA	1 cut(s)	789
BspLI	GGNNCC	1 cut(s)	879
BspMAI	CTGCAG	2 cut(s)	304, 957
BspMI	ACCTGC	2 cut(s)	98, 500
BspPI	GGATC	2 cut(s)	992, 1048
BspTI	CTTAAG	1 cut(s)	416
BsrBI	CCGCTC	1 cut(s)	125
BsrDI	GCAATG	2 cut(s)	402, 816
BsrFI	RCCGGY	1 cut(s)	1210
BsrI	ACTGG	5 cut(s)	355, 759, 916, 937, 1051
BssAI	RCCGGY	1 cut(s)	1210
BssECI	CCNNGG	3 cut(s)	15, 162, 1164
BssMI	GATC	5 cut(s)	427, 566, 637, 997, 1053
BssNI	GRCGYC	1 cut(s)	192
BssSI	CACGAG	1 cut(s)	336
BssT1I	CCWWGG	1 cut(s)	162
Bst2BI	CACGAG	1 cut(s)	336
Bst2UI	CCWGG	3 cut(s)	16, 750, 1165
Bst4CI	ACNGT	2 cut(s)	140, 523
BstACI	GRCGYC	1 cut(s)	192
BstAFI	CTTAAG	1 cut(s)	416
BstC8I	GCNNGC	2 cut(s)	576, 644
BstDEI	CTNAG	6 cut(s)	83, 384, 424, 799, 975, 1086
BstDSI	CCRYGG	1 cut(s)	162
BstEII	GGTNACC	1 cut(s)	532
BstF5I	GGATG	4 cut(s)	280, 685, 1039, 1190
BstKTI	GATC	5 cut(s)	430, 569, 640, 1000, 1056
BstMAI	GTCTC	1 cut(s)	978
BstMBI	GATC	5 cut(s)	427, 566, 637, 997, 1053
BstMWI	GCNNNNNNNGC	7 cut(s)	198, 204, 231, 584, 854, 866, 875
BstNI	CCWGG	3 cut(s)	16, 750, 1165
BstPI	GGTNACC	1 cut(s)	532
BstSCI	CCNGG	3 cut(s)	14, 748, 1163
BstSFI	CTRYAG	2 cut(s)	300, 953
BstV1I	GCAGC	8 cut(s)	134, 246, 286, 367, 463, 869, 1136, 1160
BstV2I	GAAGAC	3 cut(s)	39, 885, 1106
BstX2I	RGATCY	3 cut(s)	427, 997, 1053
BstYI	RGATCY	3 cut(s)	427, 997, 1053
BsuRI	GGCC	1 cut(s)	401
BtgI	CCRYGG	1 cut(s)	162
BtrI	CACGTC	1 cut(s)	45
BtsCI	GGATG	4 cut(s)	280, 685, 1039, 1190
BtsIMutI	CAGTG	4 cut(s)	576, 909, 930, 1044
BveI	ACCTGC	2 cut(s)	98, 500
Cac8I	GCNNGC	2 cut(s)	576, 644
CaiI	CAGNNNCTG	3 cut(s)	90, 470, 806
CciI	TCATGA	1 cut(s)	789
Cfr10I	RCCGGY	1 cut(s)	1210
Cfr13I	GGNCC	1 cut(s)	120
CseI	GACGC	2 cut(s)	181, 698
Csp6I	GTAC	1 cut(s)	348
CviAII	CATG	5 cut(s)	163, 226, 245, 790, 1058
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	6 cut(s)	83, 384, 424, 799, 975, 1086
DpnI	GATC	5 cut(s)	429, 568, 639, 999, 1055
DpnII	GATC	5 cut(s)	427, 566, 637, 997, 1053
DriI	GACNNNNNGTC	1 cut(s)	140
Eam1105I	GACNNNNNGTC	1 cut(s)	140
EciI	GGCGGA	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	162
Eco24I	GRGCYC	1 cut(s)	425
Eco47I	GGWCC	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	659
Eco91I	GGTNACC	1 cut(s)	532
EcoO65I	GGTNACC	1 cut(s)	532
EcoRII	CCWGG	3 cut(s)	14, 748, 1163
EcoT14I	CCWWGG	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	425
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	5 cut(s)	166, 229, 248, 793, 1061
FalI	AAGNNNNNCTT	1 cut(s)	1214
FatI	CATG	5 cut(s)	162, 225, 244, 789, 1057
FauI	CCCGC	3 cut(s)	318, 400, 1144
Fnu4HI	GCNGC	9 cut(s)	148, 199, 235, 300, 381, 477, 858, 1125, 1149
FokI	GGATG	4 cut(s)	287, 692, 1046, 1177
FriOI	GRGCYC	1 cut(s)	425
Fsp4HI	GCNGC	9 cut(s)	148, 199, 235, 300, 381, 477, 858, 1125, 1149
FspBI	CTAG	2 cut(s)	344, 501
GluI	GCNGC	9 cut(s)	148, 199, 235, 300, 381, 477, 858, 1125, 1149
GsuI	CTGGAG	4 cut(s)	817, 933, 954, 1068
HaeIII	GGCC	1 cut(s)	401
HapII	CCGG	1 cut(s)	1211
HgaI	GACGC	2 cut(s)	181, 698
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	5 cut(s)	166, 229, 248, 793, 1061
HincII	GTYRAC	3 cut(s)	253, 613, 1138
HindII	GTYRAC	3 cut(s)	253, 613, 1138
HindIII	AAGCTT	1 cut(s)	1223
HinfI	GANTC	6 cut(s)	167, 334, 358, 389, 797, 1170
HpaII	CCGG	1 cut(s)	1211
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	6 cut(s)	242, 253, 341, 613, 964, 1138
Hpy188I	TCNGA	3 cut(s)	86, 427, 733
Hpy188III	TCNNGA	7 cut(s)	501, 677, 790, 801, 1096, 1157, 1206
Hpy8I	GTNNAC	6 cut(s)	242, 253, 341, 613, 964, 1138
Hpy99I	CGWCG	2 cut(s)	191, 197
HpyAV	CCTTC	7 cut(s)	163, 548, 683, 698, 1011, 1102, 1187
HpyCH4III	ACNGT	2 cut(s)	140, 523
HpyCH4IV	ACGT	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	7 cut(s)	198, 204, 231, 584, 854, 866, 875
HpyF3I	CTNAG	6 cut(s)	83, 384, 424, 799, 975, 1086
HpySE526I	ACGT	1 cut(s)	44
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	5 cut(s)	166, 229, 248, 793, 1061
Kzo9I	GATC	5 cut(s)	427, 566, 637, 997, 1053
LmnI	GCTCC	3 cut(s)	155, 883, 1022
Lsp1109I	GCAGC	8 cut(s)	134, 246, 286, 367, 463, 869, 1136, 1160
LweI	GCATC	2 cut(s)	265, 670
MaeI	CTAG	2 cut(s)	344, 501
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	3 cut(s)	532, 982, 1060
MalI	GATC	5 cut(s)	429, 568, 639, 999, 1055
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	5 cut(s)	427, 566, 637, 997, 1053
MboII	GAAGA	4 cut(s)	39, 863, 885, 1111
MflI	RGATCY	3 cut(s)	427, 997, 1053
MhlI	GDGCHC	2 cut(s)	415, 425
MluCI	AATT	3 cut(s)	54, 318, 726
MlyI	GAGTC	2 cut(s)	328, 791
MseI	TTAA	4 cut(s)	129, 180, 219, 417
MspA1I	CMGCKG	5 cut(s)	147, 237, 860, 883, 1151
MspCI	CTTAAG	1 cut(s)	416
MspI	CCGG	1 cut(s)	1211
MspR9I	CCNGG	3 cut(s)	16, 750, 1165
MvaI	CCWGG	3 cut(s)	16, 750, 1165
MwoI	GCNNNNNNNGC	7 cut(s)	198, 204, 231, 584, 854, 866, 875
NcoI	CCATGG	1 cut(s)	162
NdeII	GATC	5 cut(s)	427, 566, 637, 997, 1053
NlaIII	CATG	5 cut(s)	166, 229, 248, 793, 1061
NlaIV	GGNNCC	1 cut(s)	879
NmuCI	GTSAC	1 cut(s)	1060
PagI	TCATGA	1 cut(s)	789
PfeI	GAWTC	4 cut(s)	167, 358, 389, 1170
PkrI	GCNGC	9 cut(s)	149, 200, 236, 301, 382, 478, 859, 1126, 1150
PleI	GAGTC	2 cut(s)	328, 791
PpsI	GAGTC	2 cut(s)	328, 791
PsiI	TTATAA	1 cut(s)	440
Psp6I	CCWGG	3 cut(s)	14, 748, 1163
PspEI	GGTNACC	1 cut(s)	532
PspGI	CCWGG	3 cut(s)	14, 748, 1163
PspN4I	GGNNCC	1 cut(s)	879
PspPI	GGNCC	1 cut(s)	120
PstI	CTGCAG	2 cut(s)	304, 957
PstNI	CAGNNNCTG	3 cut(s)	90, 470, 806
PsuI	RGATCY	3 cut(s)	427, 997, 1053
PvuII	CAGCTG	2 cut(s)	147, 860
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
SaqAI	TTAA	4 cut(s)	129, 180, 219, 417
SatI	GCNGC	9 cut(s)	148, 199, 235, 300, 381, 477, 858, 1125, 1149
Sau3AI	GATC	5 cut(s)	427, 566, 637, 997, 1053
Sau96I	GGNCC	1 cut(s)	120
SbfI	CCTGCAGG	1 cut(s)	957
SchI	GAGTC	2 cut(s)	328, 791
ScrFI	CCNGG	3 cut(s)	16, 750, 1165
SdaI	CCTGCAGG	1 cut(s)	957
SduI	GDGCHC	2 cut(s)	415, 425
SfaNI	GCATC	2 cut(s)	265, 670
SfcI	CTRYAG	2 cut(s)	300, 953
SinI	GGWCC	1 cut(s)	120
SmlI	CTYRAG	3 cut(s)	279, 416, 1184
SmoI	CTYRAG	3 cut(s)	279, 416, 1184
Sse8387I	CCTGCAGG	1 cut(s)	957
Sse9I	AATT	3 cut(s)	54, 318, 726
SspMI	CTAG	2 cut(s)	344, 501
StyD4I	CCNGG	3 cut(s)	14, 748, 1163
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	2 cut(s)	140, 523
TaiI	ACGT	1 cut(s)	47
TasI	AATT	3 cut(s)	54, 318, 726
TauI	GCSGC	1 cut(s)	201
TfiI	GAWTC	4 cut(s)	167, 358, 389, 1170
Tru1I	TTAA	4 cut(s)	129, 180, 219, 417
Tru9I	TTAA	4 cut(s)	129, 180, 219, 417
TscAI	CASTG	4 cut(s)	576, 916, 937, 1051
TseFI	GTSAC	1 cut(s)	1060
TseI	GCWGC	8 cut(s)	147, 234, 299, 380, 476, 857, 1124, 1148
Tsp45I	GTSAC	1 cut(s)	1060
TspDTI	ATGAA	1 cut(s)	806
TspGWI	ACGGA	1 cut(s)	287
TspRI	CASTG	4 cut(s)	576, 916, 937, 1051
Vha464I	CTTAAG	1 cut(s)	416
VpaK11BI	GGWCC	1 cut(s)	120
XapI	RAATTY	1 cut(s)	726
XbaI	TCTAGA	1 cut(s)	500
XspI	CTAG	2 cut(s)	344, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.