AT5G55450

lipid-transfer protein DIR1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011680
Physical Location & Seq
Forward (+)
22467337 .. 22468306
970 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G55450.1

Sequence Viewer

Length: 315 bp
ATGGGTAAGGACAACACCAGAATCCTCATGCAATTTTCAGCTCTCGCGATGGTTTTAACAGCTGCAATAATGGTGAAAGAAGCTACAAGCATTCCCGTTTGCAACATTGACACAAACGACTTGGCGAAATGCCGTCCAGCCGTCACTGGAAACAACCCTCCACCACCGGGACCGGACTGCTGCGCAGTGGCCAGAGTTGCTAATCTACAATGCCTCTGCCCGTACAAGCCTTATCTCCCCACTGTCGGGATAGACCCATCTAGAGTCAGGCCTCTTCTTGCCAATTGTGGTGTAAACAGTCCTTCCTGTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

104

Amino Acids

11.0

Weight (kDa)

8.48

Isoelectric Point (pI)

37.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 16 - 101 7.6e-09 Probable lipid transfer
Tryp_alpha_amyl PF00234 34 - 103 4.2e-07 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011680)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55410 AT5G55410 AT5G55450 AT5G55460
fragaria_vesca FvH4_3g30320 FvH4_3g30320
malus_domestica MD11G1207300.v1.1
prunus_persica Prupe.4G228100_v2.0.a1
pyrus_communis pycom11g18050
rosa_chinensis RchiOBHm_Chr5g0056191
rosa_laevigata RLG00000035062
rosa_multiflora Rmu_sc0000680.1_g000025
rosa_roxburghii Rroxscaffold_1G00024100
rosa_rugosa Rorug05G0297900
rosa_samantha Rh5BG380100 Rh5CG402900 Rh5DG393100
rosa_wichuraiana Rw0G004430 Rw0G012670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 184
AccII CGCG 1 cut(s) 47
AcoI YGGCCR 1 cut(s) 189
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 3 cut(s) 167, 245, 246
AluBI AGCT 3 cut(s) 41, 62, 83
AluI AGCT 3 cut(s) 41, 62, 83
AoxI GGCC 2 cut(s) 189, 269
ApeKI GCWGC 2 cut(s) 62, 180
AspLEI GCGC 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 170
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 85
AvaII GGWCC 1 cut(s) 170
BalI TGGCCA 1 cut(s) 191
BbvI GCAGC 2 cut(s) 49, 167
BccI CCATC 2 cut(s) 43, 265
BceAI ACGGC 2 cut(s) 117, 125
BcnI CCSGG 1 cut(s) 168
BfaI CTAG 1 cut(s) 261
BisI GCNGC 2 cut(s) 63, 181
BlsI GCNGC 2 cut(s) 64, 182
Bme1390I CCNGG 1 cut(s) 168
Bme18I GGWCC 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 171
BmrFI CCNGG 1 cut(s) 168
BpuMI CCSGG 1 cut(s) 168
BsaWI WCCGGW 1 cut(s) 172
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 245, 246
Bse1I ACTGG 1 cut(s) 151
BseLI CCNNNNNNNGG 3 cut(s) 167, 245, 246
BseNI ACTGG 1 cut(s) 151
BseXI GCAGC 2 cut(s) 49, 167
Bsh1236I CGCG 1 cut(s) 47
BshFI GGCC 2 cut(s) 191, 271
BsiSI CCGG 2 cut(s) 167, 173
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 3 cut(s) 167, 245, 246
BsmFI GGGAC 1 cut(s) 183
BsmI GAATGC 1 cut(s) 90
BsnI GGCC 2 cut(s) 191, 271
Bsp68I TCGCGA 1 cut(s) 47
BspANI GGCC 2 cut(s) 191, 271
BspFNI CGCG 1 cut(s) 47
BspLI GGNNCC 1 cut(s) 171
BsrI ACTGG 1 cut(s) 151
Bst4CI ACNGT 2 cut(s) 244, 299
Bst6I CTCTTC 1 cut(s) 279
BstFNI CGCG 1 cut(s) 47
BstHHI GCGC 1 cut(s) 185
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 166
BstUI CGCG 1 cut(s) 47
BstV1I GCAGC 2 cut(s) 49, 167
BsuRI GGCC 2 cut(s) 191, 271
BtgZI GCGATG 1 cut(s) 62
BtsI GCAGTG 1 cut(s) 192
BtsIMutI CAGTG 3 cut(s) 144, 192, 240
BtuMI TCGCGA 1 cut(s) 47
CfoI GCGC 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 170
Csp6I GTAC 1 cut(s) 223
CviAII CATG 1 cut(s) 28
CviJI RGCY 7 cut(s) 41, 62, 83, 140, 191, 229, 271
CviKI_1 RGCY 7 cut(s) 41, 62, 83, 140, 191, 229, 271
CviQI GTAC 1 cut(s) 223
EaeI YGGCCR 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco147I AGGCCT 1 cut(s) 271
Eco47I GGWCC 1 cut(s) 170
FaeI CATG 1 cut(s) 31
FaiI YATR 1 cut(s) 29
FaqI GGGAC 1 cut(s) 183
FatI CATG 1 cut(s) 27
Fnu4HI GCNGC 2 cut(s) 63, 181
Fsp4HI GCNGC 2 cut(s) 63, 181
FspBI CTAG 1 cut(s) 261
FspI TGCGCA 1 cut(s) 184
GlaI GCGC 1 cut(s) 184
GluI GCNGC 2 cut(s) 63, 181
HaeIII GGCC 2 cut(s) 191, 271
HapII CCGG 2 cut(s) 167, 173
HhaI GCGC 1 cut(s) 185
Hin1II CATG 1 cut(s) 31
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HinfI GANTC 2 cut(s) 21, 264
HpaII CCGG 2 cut(s) 167, 173
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 1 cut(s) 295
Hpy188III TCNNGA 3 cut(s) 46, 247, 261
Hpy8I GTNNAC 1 cut(s) 295
HpyAV CCTTC 1 cut(s) 312
HpyCH4III ACNGT 2 cut(s) 244, 299
HpyCH4V TGCA 3 cut(s) 31, 65, 102
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
Hsp92II CATG 1 cut(s) 31
HspAI GCGC 1 cut(s) 183
LpnPI CCDG 7 cut(s) 31, 132, 150, 180, 186, 205, 253
Lsp1109I GCAGC 2 cut(s) 49, 167
MaeI CTAG 1 cut(s) 261
MaeIII GTNAC 1 cut(s) 142
MboII GAAGA 1 cut(s) 266
MfeI CAATTG 1 cut(s) 283
MlsI TGGCCA 1 cut(s) 191
MluCI AATT 2 cut(s) 32, 283
MluNI TGGCCA 1 cut(s) 191
MlyI GAGTC 1 cut(s) 273
MnlI CCTC 4 cut(s) 35, 168, 224, 282
Mox20I TGGCCA 1 cut(s) 191
MscI TGGCCA 1 cut(s) 191
MseI TTAA 1 cut(s) 56
Msp20I TGGCCA 1 cut(s) 191
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 2 cut(s) 167, 173
MspR9I CCNGG 1 cut(s) 168
MunI CAATTG 1 cut(s) 283
Mva1269I GAATGC 1 cut(s) 90
MvnI CGCG 1 cut(s) 47
MwoI GCNNNNNNNGC 1 cut(s) 197
NciI CCSGG 1 cut(s) 168
NlaIII CATG 1 cut(s) 31
NlaIV GGNNCC 1 cut(s) 171
NmuCI GTSAC 1 cut(s) 142
NruI TCGCGA 1 cut(s) 47
NsbI TGCGCA 1 cut(s) 184
PceI AGGCCT 1 cut(s) 271
PctI GAATGC 1 cut(s) 90
PfeI GAWTC 1 cut(s) 21
PkrI GCNGC 2 cut(s) 64, 182
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
PspN4I GGNNCC 1 cut(s) 171
PspPI GGNCC 1 cut(s) 170
PvuII CAGCTG 1 cut(s) 62
RruI TCGCGA 1 cut(s) 47
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
SaqAI TTAA 1 cut(s) 56
SatI GCNGC 2 cut(s) 63, 181
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 1 cut(s) 273
ScrFI CCNGG 1 cut(s) 168
SetI ASST 3 cut(s) 43, 64, 85
SinI GGWCC 1 cut(s) 170
Sse9I AATT 2 cut(s) 32, 283
SseBI AGGCCT 1 cut(s) 271
SspMI CTAG 1 cut(s) 261
StuI AGGCCT 1 cut(s) 271
StyD4I CCNGG 1 cut(s) 166
TaaI ACNGT 2 cut(s) 244, 299
TasI AATT 2 cut(s) 32, 283
TfiI GAWTC 1 cut(s) 21
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TscAI CASTG 3 cut(s) 151, 192, 247
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 2 cut(s) 62, 180
Tsp45I GTSAC 1 cut(s) 142
TspRI CASTG 3 cut(s) 151, 192, 247
VpaK11BI GGWCC 1 cut(s) 170
XbaI TCTAGA 1 cut(s) 260
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.