Rw0G012670

lipid-transfer protein DIR1

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00564
Physical Location & Seq
Forward (+)
186975 .. 189119
2145 bp
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UTR
Exon/CDS
Intron
Rw0G012670.1

Sequence Viewer

Length: 309 bp
ATGGCAAGGTTTAGTGGAGCTTTGTCGCAATGGGTGATGGTGGTTCTGTTGATTGCACTGCTGGAGGGAGCCCATGCTGTCTCGATATGTAACATCGACTCTGCACAGCTCAACTATTGCCGCCCATCAGTGACCGGCAAGTCACCAAAACCGCCATCAAAGAAATGTTGTGGTGTTGTGCACCAAGCCAACTTGCCCTGCCTGTGCAACTACAAGGCAGTCCTACCTTCCTTTGGAATCGACCCTGCACGAGCAATGGCATTGCCTAAGAAATGTGGCATGAAAACACCACCTGAATGCGTAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

102

Amino Acids

10.84

Weight (kDa)

9.16

Isoelectric Point (pI)

42.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 22 - 99 1.5e-13 Probable lipid transfer
Tryp_alpha_amyl PF00234 30 - 100 6.8e-10 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011680)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 139
AciI CCGC 2 cut(s) 121, 152
AfiI CCNNNNNNNGG 1 cut(s) 233
AluBI AGCT 2 cut(s) 20, 109
AluI AGCT 2 cut(s) 20, 109
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 1 cut(s) 85
Alw44I GTGCAC 1 cut(s) 179
ApaLI GTGCAC 1 cut(s) 179
AsuHPI GGTGA 2 cut(s) 46, 135
BaeGI GKGCMC 1 cut(s) 183
BanII GRGCYC 1 cut(s) 73
BauI CACGAG 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 183
BccI CCATC 3 cut(s) 31, 133, 163
BcoDI GTCTC 1 cut(s) 85
BisI GCNGC 1 cut(s) 121
BlsI GCNGC 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 83
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse118I RCCGGY 1 cut(s) 134
Bse3DI GCAATG 3 cut(s) 35, 260, 261
BseLI CCNNNNNNNGG 1 cut(s) 233
BseMI GCAATG 3 cut(s) 35, 260, 261
BseSI GKGCMC 1 cut(s) 183
BsgI GTGCAG 2 cut(s) 87, 231
BsiHKAI GWGCWC 1 cut(s) 183
BsiSI CCGG 1 cut(s) 135
BslI CCNNNNNNNGG 1 cut(s) 233
BsmAI GTCTC 1 cut(s) 85
BsmI GAATGC 1 cut(s) 302
Bsp1286I GDGCHC 2 cut(s) 73, 183
BspACI CCGC 2 cut(s) 121, 152
BspLI GGNNCC 1 cut(s) 70
BsrDI GCAATG 3 cut(s) 35, 260, 261
BsrFI RCCGGY 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 134
BssSI CACGAG 1 cut(s) 249
Bst2BI CACGAG 1 cut(s) 249
BstDEI CTNAG 1 cut(s) 267
BstMAI GTCTC 1 cut(s) 85
BstSLI GKGCMC 1 cut(s) 183
BtsI GCAGTG 1 cut(s) 56
BtsIMutI CAGTG 2 cut(s) 56, 135
Cfr10I RCCGGY 1 cut(s) 134
CviAII CATG 2 cut(s) 74, 280
CviJI RGCY 4 cut(s) 20, 71, 109, 188
CviKI_1 RGCY 4 cut(s) 20, 71, 109, 188
DdeI CTNAG 1 cut(s) 267
DrdI GACNNNNNNGTC 1 cut(s) 139
DseDI GACNNNNNNGTC 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 73
EcoT38I GRGCYC 1 cut(s) 73
FaeI CATG 2 cut(s) 77, 283
FaiI YATR 3 cut(s) 75, 88, 281
FatI CATG 2 cut(s) 73, 279
Fnu4HI GCNGC 1 cut(s) 121
FriOI GRGCYC 1 cut(s) 73
Fsp4HI GCNGC 1 cut(s) 121
GluI GCNGC 1 cut(s) 121
GsuI CTGGAG 1 cut(s) 83
HapII CCGG 1 cut(s) 135
Hin1II CATG 2 cut(s) 77, 283
HinfI GANTC 2 cut(s) 98, 237
HpaII CCGG 1 cut(s) 135
HphI GGTGA 2 cut(s) 46, 135
Hpy166II GTNNAC 1 cut(s) 181
Hpy188III TCNNGA 1 cut(s) 82
Hpy8I GTNNAC 1 cut(s) 181
HpyAV CCTTC 1 cut(s) 237
HpyCH4V TGCA 5 cut(s) 56, 104, 181, 207, 248
HpyF3I CTNAG 1 cut(s) 267
Hsp92II CATG 2 cut(s) 77, 283
LmnI GCTCC 2 cut(s) 17, 68
LpnPI CCDG 5 cut(s) 47, 148, 211, 215, 258
MaeIII GTNAC 3 cut(s) 89, 130, 141
MhlI GDGCHC 2 cut(s) 73, 183
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 1 cut(s) 58
MslI CAYNNNNRTG 1 cut(s) 295
MspI CCGG 1 cut(s) 135
Mva1269I GAATGC 1 cut(s) 302
NlaIII CATG 2 cut(s) 77, 283
NlaIV GGNNCC 1 cut(s) 70
NmuCI GTSAC 2 cut(s) 130, 141
PctI GAATGC 1 cut(s) 302
PfeI GAWTC 1 cut(s) 237
PkrI GCNGC 1 cut(s) 122
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 70
RseI CAYNNNNRTG 1 cut(s) 295
SatI GCNGC 1 cut(s) 121
SchI GAGTC 1 cut(s) 92
SduI GDGCHC 2 cut(s) 73, 183
SetI ASST 5 cut(s) 11, 22, 111, 229, 295
SmiMI CAYNNNNRTG 1 cut(s) 295
SsiI CCGC 2 cut(s) 121, 152
TaqI TCGA 3 cut(s) 83, 96, 240
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 1 cut(s) 237
TscAI CASTG 2 cut(s) 63, 135
TseFI GTSAC 2 cut(s) 130, 141
Tsp45I GTSAC 2 cut(s) 130, 141
TspDTI ATGAA 1 cut(s) 296
TspRI CASTG 2 cut(s) 63, 135
VneI GTGCAC 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.