Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011680

Physical Location & Seq

Genomic Coordinates Reverse (-)

34333128 .. 34334175

Gene Structure 1048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0297900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGAGAAGAGTTTCATACCAAGAACTTCTAAGTGCGAGTGTGCGACAAATGGATTCACCGAAAGCAGCTTACTTGGAGATGGGGGTTTTGGTTCAGTATACAAAGGAACACTGTCAGACGGTATGGAGGTTGCCATAAAGGTTTTTAATTTACAGTTAGAAGGGGCATTCGCAAGTTTTGATACTGAATGTGAAATGTTAAGCAATATTATTCGTCACCGAAATCTCATCAAAGTCATCAGTTGTTGCAGCCAGATTGATTTCAAAGCTCTCGTATTGAACTACATGCCTAACGGGAGTCTTGACAAATGGTTGTATTTTCAGAACTTTTCCTTGGACATCCTTCAGAGGTTGAATATACTGATTGATGTTGCGTCGGCATTGGAGTACCTTCATCATGGTTATGAGACACCTATTGTCCATTGTGATTTGAAGCCCAGCAATATATTACTAGATGATGATATGGGTGCACATGTTGCTGATTTTGGCATTGCAAAACTCTTGGGTGGAGGAGATTCTATGACTCGAACCATGACCCTTGCCACAATCGGTTATATGGCTCCAGAATATGGAATGGAAGGAATGGTCACCAGAAGAGGGGATGTGTATAGTTTTGGTATTGTAGTGATGGAGACATTCACAAGAAGGAAGCCAACTGATGAGATCTTCGCTGGGGAAATGAGTTTAAAGCAATGGGTTGCAAATTCACTAGATGCAGGTGCGATAGTTAAAGTTGTGGATGCGACTTTACTTGGAATAGAGGAGGATCATGATTTTGTGAGCAAGAGGGAATGCTTATCATCTGTTATGAGATTAGCTGTTGGTTGTTCAGCAGAATCACCAGAAGAGAGAGTAAATATGCAAGAGGCTCTCGCCACGCTTAAGAAAATCAAGATCAAGTTTTTGAAGGACGTTGGAGGAGGTGTTGAACAGCCCTCTTCTTCAAGGATCCGAATCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

320

Amino Acids

35.31

Weight (kDa)

5.18

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	20 - 292	2.4e-41	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	23 - 292	4.8e-41	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55410 AT5G55410 AT5G55450 AT5G55460
fragaria_vesca	FvH4_3g30320 FvH4_3g30320
malus_domestica	MD11G1207300.v1.1
prunus_persica	Prupe.4G228100_v2.0.a1
pyrus_communis	pycom11g18050
rosa_chinensis	RchiOBHm_Chr5g0056191
rosa_laevigata	RLG00000035062
rosa_multiflora	Rmu_sc0000680.1_g000025
rosa_roxburghii	Rroxscaffold_1G00024100
rosa_rugosa	Rorug05G0297900
rosa_samantha	Rh5BG380100 Rh5CG402900 Rh5DG393100
rosa_wichuraiana	Rw0G004430 Rw0G012670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	707
Acc36I	ACCTGC	1 cut(s)	707
AccB7I	CCANNNNNTGG	1 cut(s)	569
AccI	GTMKAC	1 cut(s)	99
AclWI	GGATC	3 cut(s)	774, 943, 956
AcsI	RAATTY	1 cut(s)	703
AcuI	CTGAAG	1 cut(s)	329
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	2 cut(s)	569, 597
AflII	CTTAAG	1 cut(s)	881
AflIII	ACRYGT	1 cut(s)	472
AgsI	TTSAA	7 cut(s)	265, 280, 355, 433, 907, 929, 945
AjuI	GAANNNNNNNTTGG	2 cut(s)	317, 349
AluBI	AGCT	3 cut(s)	69, 269, 818
AluI	AGCT	3 cut(s)	69, 269, 818
Alw21I	GWGCWC	1 cut(s)	472
Alw26I	GTCTC	2 cut(s)	401, 626
Alw44I	GTGCAC	1 cut(s)	468
AlwI	GGATC	3 cut(s)	774, 943, 956
ApaLI	GTGCAC	1 cut(s)	468
ApeKI	GCWGC	2 cut(s)	66, 249
ApoI	RAATTY	1 cut(s)	703
Asp700I	GAANNNNTTC	1 cut(s)	11
AsuHPI	GGTGA	4 cut(s)	49, 209, 580, 831
BaeGI	GKGCMC	1 cut(s)	472
BamHI	GGATCC	1 cut(s)	948
Bbv12I	GWGCWC	1 cut(s)	472
BbvI	GCAGC	2 cut(s)	78, 261
BccI	CCATC	2 cut(s)	74, 622
BcoDI	GTCTC	2 cut(s)	401, 626
BfaI	CTAG	2 cut(s)	452, 710
BfrI	CTTAAG	1 cut(s)	881
BfuAI	ACCTGC	1 cut(s)	707
BglII	AGATCT	1 cut(s)	663
BisI	GCNGC	2 cut(s)	67, 250
BlsI	GCNGC	2 cut(s)	68, 251
BmiI	GGNNCC	2 cut(s)	561, 950
BmsI	GCATC	2 cut(s)	703, 730
BpmI	CTGGAG	1 cut(s)	546
BsaBI	GATNNNNATC	1 cut(s)	953
BsaJI	CCNNGG	1 cut(s)	333
BsaXI	ACNNNNNCTCC	2 cut(s)	909, 939
Bsc4I	CCNNNNNNNGG	2 cut(s)	569, 597
Bse3DI	GCAATG	2 cut(s)	489, 698
Bse8I	GATNNNNATC	1 cut(s)	953
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	3 cut(s)	339, 607, 745
BseJI	GATNNNNATC	1 cut(s)	953
BseLI	CCNNNNNNNGG	2 cut(s)	569, 597
BseMI	GCAATG	2 cut(s)	489, 698
BseRI	GAGGAG	3 cut(s)	525, 776, 933
BseSI	GKGCMC	1 cut(s)	472
BseXI	GCAGC	2 cut(s)	78, 261
BseYI	CCCAGC	2 cut(s)	437, 671
BsiHKAI	GWGCWC	1 cut(s)	472
BslI	CCNNNNNNNGG	2 cut(s)	569, 597
BsmAI	GTCTC	2 cut(s)	401, 626
BsmI	GAATGC	2 cut(s)	167, 797
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp143I	GATC	4 cut(s)	663, 766, 894, 948
BspHI	TCATGA	1 cut(s)	769
BspLI	GGNNCC	2 cut(s)	561, 950
BspMI	ACCTGC	1 cut(s)	707
BspPI	GGATC	3 cut(s)	774, 943, 956
BspTI	CTTAAG	1 cut(s)	881
BsrDI	GCAATG	2 cut(s)	489, 698
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	4 cut(s)	663, 766, 894, 948
BssNAI	GTATAC	1 cut(s)	100
BssT1I	CCWWGG	1 cut(s)	333
Bst1107I	GTATAC	1 cut(s)	100
Bst4CI	ACNGT	3 cut(s)	114, 122, 156
Bst6I	CTCTTC	4 cut(s)	2, 589, 840, 943
BstAFI	CTTAAG	1 cut(s)	881
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstDEI	CTNAG	1 cut(s)	30
BstEII	GGTNACC	1 cut(s)	586
BstF5I	GGATG	3 cut(s)	339, 607, 745
BstKTI	GATC	4 cut(s)	666, 769, 897, 951
BstMAI	GTCTC	2 cut(s)	401, 626
BstMBI	GATC	4 cut(s)	663, 766, 894, 948
BstMWI	GCNNNNNNNGC	1 cut(s)	476
BstNSI	RCATGY	2 cut(s)	289, 476
BstPI	GGTNACC	1 cut(s)	586
BstSLI	GKGCMC	1 cut(s)	472
BstV1I	GCAGC	2 cut(s)	78, 261
BstX2I	RGATCY	2 cut(s)	663, 948
BstYI	RGATCY	2 cut(s)	663, 948
BstZ17I	GTATAC	1 cut(s)	100
BtsCI	GGATG	3 cut(s)	339, 607, 745
BtsIMutI	CAGTG	1 cut(s)	110
BveI	ACCTGC	1 cut(s)	707
CciI	TCATGA	1 cut(s)	769
CseI	GACGC	1 cut(s)	363
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	5 cut(s)	286, 398, 473, 532, 770
CviJI	RGCY	9 cut(s)	69, 252, 269, 436, 560, 652, 818, 869, 934
CviKI_1	RGCY	9 cut(s)	69, 252, 269, 436, 560, 652, 818, 869, 934
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	4 cut(s)	665, 768, 896, 950
DpnII	GATC	4 cut(s)	663, 766, 894, 948
DraI	TTTAAA	1 cut(s)	687
Eam1104I	CTCTTC	4 cut(s)	2, 589, 840, 943
EarI	CTCTTC	4 cut(s)	2, 589, 840, 943
Eco130I	CCWWGG	1 cut(s)	333
Eco57I	CTGAAG	1 cut(s)	329
Eco91I	GGTNACC	1 cut(s)	586
EcoO65I	GGTNACC	1 cut(s)	586
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	5 cut(s)	289, 401, 476, 535, 773
FatI	CATG	5 cut(s)	285, 397, 472, 531, 769
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	2 cut(s)	67, 250
FokI	GGATG	3 cut(s)	326, 614, 752
Fsp4HI	GCNGC	2 cut(s)	67, 250
FspBI	CTAG	2 cut(s)	452, 710
GluI	GCNGC	2 cut(s)	67, 250
GsaI	CCCAGC	2 cut(s)	441, 675
GsuI	CTGGAG	1 cut(s)	546
HgaI	GACGC	1 cut(s)	363
Hin1II	CATG	5 cut(s)	289, 401, 476, 535, 773
HinfI	GANTC	6 cut(s)	54, 298, 515, 523, 836, 954
HphI	GGTGA	4 cut(s)	49, 209, 580, 831
Hpy166II	GTNNAC	2 cut(s)	100, 470
Hpy188I	TCNGA	4 cut(s)	118, 324, 348, 953
Hpy188III	TCNNGA	4 cut(s)	302, 563, 770, 892
Hpy8I	GTNNAC	2 cut(s)	100, 470
Hpy99I	CGWCG	1 cut(s)	379
HpyAV	CCTTC	6 cut(s)	155, 353, 401, 572, 639, 901
HpyCH4III	ACNGT	3 cut(s)	114, 122, 156
HpyCH4IV	ACGT	1 cut(s)	912
HpyCH4V	TGCA	6 cut(s)	249, 470, 494, 701, 716, 862
HpyF10VI	GCNNNNNNNGC	1 cut(s)	476
HpyF3I	CTNAG	1 cut(s)	30
HpySE526I	ACGT	1 cut(s)	912
Hsp92II	CATG	5 cut(s)	289, 401, 476, 535, 773
Kzo9I	GATC	4 cut(s)	663, 766, 894, 948
LmnI	GCTCC	1 cut(s)	565
LpnPI	CCDG	7 cut(s)	266, 451, 576, 604, 657, 702, 855
Lsp1109I	GCAGC	2 cut(s)	78, 261
LweI	GCATC	2 cut(s)	703, 730
MaeI	CTAG	2 cut(s)	452, 710
MaeII	ACGT	1 cut(s)	912
MaeIII	GTNAC	2 cut(s)	215, 586
MalI	GATC	4 cut(s)	665, 768, 896, 950
MboI	GATC	4 cut(s)	663, 766, 894, 948
MboII	GAAGA	7 cut(s)	19, 606, 658, 857, 930, 933, 949
MflI	RGATCY	2 cut(s)	663, 948
MhlI	GDGCHC	1 cut(s)	472
MluCI	AATT	2 cut(s)	148, 703
MlyI	GAGTC	2 cut(s)	307, 517
MmeI	TCCRAC	1 cut(s)	895
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	5 cut(s)	147, 200, 686, 729, 882
MslI	CAYNNNNRTG	1 cut(s)	402
MspCI	CTTAAG	1 cut(s)	881
Mva1269I	GAATGC	2 cut(s)	167, 797
MwoI	GCNNNNNNNGC	1 cut(s)	476
NdeII	GATC	4 cut(s)	663, 766, 894, 948
NlaIII	CATG	5 cut(s)	289, 401, 476, 535, 773
NlaIV	GGNNCC	2 cut(s)	561, 950
NmuCI	GTSAC	2 cut(s)	215, 586
NspI	RCATGY	2 cut(s)	289, 476
PagI	TCATGA	1 cut(s)	769
PaqCI	CACCTGC	1 cut(s)	707
PciI	ACATGT	1 cut(s)	472
PctI	GAATGC	2 cut(s)	167, 797
PdmI	GAANNNNTTC	1 cut(s)	11
PfeI	GAWTC	4 cut(s)	54, 515, 836, 954
PflMI	CCANNNNNTGG	1 cut(s)	569
PkrI	GCNGC	2 cut(s)	68, 251
PleI	GAGTC	2 cut(s)	306, 517
PpsI	GAGTC	2 cut(s)	306, 517
PscI	ACATGT	1 cut(s)	472
PspEI	GGTNACC	1 cut(s)	586
PspFI	CCCAGC	2 cut(s)	437, 671
PspN4I	GGNNCC	2 cut(s)	561, 950
PsuI	RGATCY	2 cut(s)	663, 948
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
RseI	CAYNNNNRTG	1 cut(s)	402
SaqAI	TTAA	5 cut(s)	147, 200, 686, 729, 882
SatI	GCNGC	2 cut(s)	67, 250
Sau3AI	GATC	4 cut(s)	663, 766, 894, 948
SchI	GAGTC	2 cut(s)	307, 517
SduI	GDGCHC	1 cut(s)	472
SfaNI	GCATC	2 cut(s)	703, 730
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	1 cut(s)	881
SmoI	CTYRAG	1 cut(s)	881
Sse9I	AATT	2 cut(s)	148, 703
SspI	AATATT	1 cut(s)	208
SspMI	CTAG	2 cut(s)	452, 710
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	3 cut(s)	114, 122, 156
TaiI	ACGT	1 cut(s)	915
TaqI	TCGA	1 cut(s)	526
TasI	AATT	2 cut(s)	148, 703
TfiI	GAWTC	4 cut(s)	54, 515, 836, 954
Tru1I	TTAA	5 cut(s)	147, 200, 686, 729, 882
Tru9I	TTAA	5 cut(s)	147, 200, 686, 729, 882
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	2 cut(s)	215, 586
TseI	GCWGC	2 cut(s)	66, 249
Tsp45I	GTSAC	2 cut(s)	215, 586
TspDTI	ATGAA	2 cut(s)	4, 383
TspRI	CASTG	1 cut(s)	117
Van91I	CCANNNNNTGG	1 cut(s)	569
Vha464I	CTTAAG	1 cut(s)	881
VneI	GTGCAC	1 cut(s)	468
XapI	RAATTY	1 cut(s)	703
XceI	RCATGY	2 cut(s)	289, 476
XmiI	GTMKAC	1 cut(s)	99
XmnI	GAANNNNTTC	1 cut(s)	11
XspI	CTAG	2 cut(s)	452, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.