MD11G1207300.v1.1

lipid-transfer protein DIR1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0011680
Physical Location & Seq
Reverse (-)
30197648 .. 30198388
741 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1207300.v1.1.491

Sequence Viewer

Length: 345 bp
ATGTGCTCCCTTGAGAGAGAGAGAGAGAGAGAGAGAATGACAAGGACTAGCAGCGTCGCGTCGTGGGCGCCGGTGATTTTGTTGCTTGCACTTGTTGCCGGATCTACGGCGGTTTCCATATGCAACATTGAATCCGACCAACTGAAGGAGTGTCGGCCGGCAGTAACCGGCAAATCACCAAAACCACCAACCAAGAGATGTTGCAGTGTTGTCCGCCAAGCCAACTTACCCTGCCTCTGCAACTTCAAGTCCGTACTCCCTTCGATTGGGATCGACCCTGCGCTGGCTATGGCGTTGCCTAAGAAGTGTGGCCTGAAAACGCCCCGAGAATGCCATGTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

115

Amino Acids

12.36

Weight (kDa)

9.25

Isoelectric Point (pI)

50.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 36 - 109 4.3e-12 Probable lipid transfer
Tryp_alpha_amyl PF00234 41 - 111 1.2e-09 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011680)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55410 AT5G55410 AT5G55450 AT5G55460
fragaria_vesca FvH4_3g30320 FvH4_3g30320
malus_domestica MD11G1207300.v1.1
prunus_persica Prupe.4G228100_v2.0.a1
pyrus_communis pycom11g18050
rosa_chinensis RchiOBHm_Chr5g0056191
rosa_laevigata RLG00000035062
rosa_multiflora Rmu_sc0000680.1_g000025
rosa_roxburghii Rroxscaffold_1G00024100
rosa_rugosa Rorug05G0297900
rosa_samantha Rh5BG380100 Rh5CG402900 Rh5DG393100
rosa_wichuraiana Rw0G004430 Rw0G012670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 67
AccII CGCG 1 cut(s) 59
AciI CCGC 2 cut(s) 110, 214
AclWI GGATC 2 cut(s) 109, 278
AcoI YGGCCR 1 cut(s) 155
AcuI CTGAAG 1 cut(s) 164
AcyI GRCGYC 1 cut(s) 68
AfaI GTAC 1 cut(s) 255
AfiI CCNNNNNNNGG 3 cut(s) 145, 266, 283
AgsI TTSAA 2 cut(s) 131, 247
Alw21I GWGCWC 1 cut(s) 8
AlwI GGATC 2 cut(s) 109, 278
Ama87I CYCGRG 1 cut(s) 324
AoxI GGCC 2 cut(s) 155, 310
ApeKI GCWGC 1 cut(s) 51
AspLEI GCGC 2 cut(s) 70, 283
AsuHPI GGTGA 2 cut(s) 85, 168
AvaI CYCGRG 1 cut(s) 324
BanI GGYRCC 1 cut(s) 67
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 63
BceAI ACGGC 1 cut(s) 123
BfaI CTAG 1 cut(s) 48
BfoI RGCGCY 1 cut(s) 71
BisI GCNGC 1 cut(s) 52
BlsI GCNGC 1 cut(s) 53
BmeT110I CYCGRG 1 cut(s) 324
BmiI GGNNCC 1 cut(s) 69
BpuEI CTTGAG 1 cut(s) 32
BsaBI GATNNNNATC 1 cut(s) 269
BsaHI GRCGYC 1 cut(s) 68
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 266, 283
Bse118I RCCGGY 3 cut(s) 70, 157, 167
Bse8I GATNNNNATC 1 cut(s) 269
BseJI GATNNNNATC 1 cut(s) 269
BseLI CCNNNNNNNGG 3 cut(s) 145, 266, 283
BseX3I CGGCCG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 63
Bsh1236I CGCG 1 cut(s) 59
Bsh1285I CGRYCG 1 cut(s) 158
BshFI GGCC 2 cut(s) 157, 312
BshNI GGYRCC 1 cut(s) 67
BsiEI CGRYCG 1 cut(s) 158
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 324
BsiSI CCGG 4 cut(s) 71, 99, 158, 168
BslI CCNNNNNNNGG 3 cut(s) 145, 266, 283
BsmI GAATGC 1 cut(s) 335
BsnI GGCC 2 cut(s) 157, 312
BsoBI CYCGRG 1 cut(s) 324
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 101, 270
BspACI CCGC 2 cut(s) 110, 214
BspANI GGCC 2 cut(s) 157, 312
BspFNI CGCG 1 cut(s) 59
BspLI GGNNCC 1 cut(s) 69
BspPI GGATC 2 cut(s) 109, 278
BspT107I GGYRCC 1 cut(s) 67
BsrFI RCCGGY 3 cut(s) 70, 157, 167
BssAI RCCGGY 3 cut(s) 70, 157, 167
BssMI GATC 2 cut(s) 101, 270
BssNI GRCGYC 1 cut(s) 68
BstACI GRCGYC 1 cut(s) 68
BstAPI GCANNNNNTGC 1 cut(s) 95
BstC8I GCNNGC 3 cut(s) 87, 159, 285
BstDEI CTNAG 1 cut(s) 300
BstFNI CGCG 1 cut(s) 59
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 2 cut(s) 70, 283
BstKTI GATC 2 cut(s) 104, 273
BstMBI GATC 2 cut(s) 101, 270
BstMCI CGRYCG 1 cut(s) 158
BstMWI GCNNNNNNNGC 2 cut(s) 65, 95
BstUI CGCG 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 63
BstX2I RGATCY 1 cut(s) 101
BstYI RGATCY 1 cut(s) 101
BstZI CGGCCG 1 cut(s) 155
BsuRI GGCC 2 cut(s) 157, 312
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 211
Cac8I GCNNGC 3 cut(s) 87, 159, 285
CfoI GCGC 2 cut(s) 70, 283
Cfr10I RCCGGY 3 cut(s) 70, 157, 167
CseI GACGC 2 cut(s) 43, 48
Csp6I GTAC 1 cut(s) 254
CviAII CATG 1 cut(s) 335
CviJI RGCY 4 cut(s) 157, 221, 287, 312
CviKI_1 RGCY 4 cut(s) 157, 221, 287, 312
CviQI GTAC 1 cut(s) 254
DdeI CTNAG 1 cut(s) 300
DinI GGCGCC 1 cut(s) 69
DpnI GATC 2 cut(s) 103, 272
DpnII GATC 2 cut(s) 101, 270
EaeI YGGCCR 1 cut(s) 155
EagI CGGCCG 1 cut(s) 155
EciI GGCGGA 1 cut(s) 203
EclXI CGGCCG 1 cut(s) 155
Eco52I CGGCCG 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 164
Eco88I CYCGRG 1 cut(s) 324
EgeI GGCGCC 1 cut(s) 69
EheI GGCGCC 1 cut(s) 69
FaeI CATG 1 cut(s) 338
FaiI YATR 4 cut(s) 119, 121, 290, 336
FatI CATG 1 cut(s) 334
FauNDI CATATG 1 cut(s) 119
Fnu4HI GCNGC 1 cut(s) 52
Fsp4HI GCNGC 1 cut(s) 52
FspBI CTAG 1 cut(s) 48
GlaI GCGC 2 cut(s) 69, 282
GluI GCNGC 1 cut(s) 52
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 2 cut(s) 157, 312
HapII CCGG 4 cut(s) 71, 99, 158, 168
HgaI GACGC 2 cut(s) 43, 48
HhaI GCGC 2 cut(s) 70, 283
Hin1I GRCGYC 1 cut(s) 68
Hin1II CATG 1 cut(s) 338
Hin6I GCGC 2 cut(s) 68, 281
HinP1I GCGC 2 cut(s) 68, 281
HinfI GANTC 1 cut(s) 131
HpaII CCGG 4 cut(s) 71, 99, 158, 168
HphI GGTGA 2 cut(s) 85, 168
Hpy188I TCNGA 1 cut(s) 136
Hpy99I CGWCG 2 cut(s) 59, 64
HpyAV CCTTC 2 cut(s) 139, 270
HpyCH4V TGCA 4 cut(s) 89, 123, 204, 240
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 95
HpyF3I CTNAG 1 cut(s) 300
Hsp92I GRCGYC 1 cut(s) 68
Hsp92II CATG 1 cut(s) 338
HspAI GCGC 2 cut(s) 68, 281
KasI GGCGCC 1 cut(s) 67
KroI GCCGGC 1 cut(s) 157
KroNI GCCGGC 1 cut(s) 159
Kzo9I GATC 2 cut(s) 101, 270
LmnI GCTCC 1 cut(s) 11
LpnPI CCDG 8 cut(s) 84, 112, 171, 181, 244, 269, 291, 326
Lsp1109I GCAGC 1 cut(s) 63
MaeI CTAG 1 cut(s) 48
MaeIII GTNAC 1 cut(s) 163
MalI GATC 2 cut(s) 103, 272
MboI GATC 2 cut(s) 101, 270
MflI RGATCY 1 cut(s) 101
MhlI GDGCHC 1 cut(s) 8
Mly113I GGCGCC 1 cut(s) 68
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 1 cut(s) 245
MroNI GCCGGC 1 cut(s) 157
MspI CCGG 4 cut(s) 71, 99, 158, 168
Mva1269I GAATGC 1 cut(s) 335
MvnI CGCG 1 cut(s) 59
MwoI GCNNNNNNNGC 2 cut(s) 65, 95
NaeI GCCGGC 1 cut(s) 159
NarI GGCGCC 1 cut(s) 68
NdeI CATATG 1 cut(s) 119
NdeII GATC 2 cut(s) 101, 270
NgoMIV GCCGGC 1 cut(s) 157
NlaIII CATG 1 cut(s) 338
NlaIV GGNNCC 1 cut(s) 69
PctI GAATGC 1 cut(s) 335
PdiI GCCGGC 1 cut(s) 159
PfeI GAWTC 1 cut(s) 131
PkrI GCNGC 1 cut(s) 53
PluTI GGCGCC 1 cut(s) 71
PspN4I GGNNCC 1 cut(s) 69
PsuI RGATCY 1 cut(s) 101
RsaI GTAC 1 cut(s) 255
RsaNI GTAC 1 cut(s) 254
SatI GCNGC 1 cut(s) 52
Sau3AI GATC 2 cut(s) 101, 270
SduI GDGCHC 1 cut(s) 8
SfoI GGCGCC 1 cut(s) 69
SgrAI CRCCGGYG 1 cut(s) 70
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
SsiI CCGC 2 cut(s) 110, 214
SspDI GGCGCC 1 cut(s) 67
SspMI CTAG 1 cut(s) 48
TaqI TCGA 2 cut(s) 263, 273
TfiI GAWTC 1 cut(s) 131
TscAI CASTG 1 cut(s) 211
TseI GCWGC 1 cut(s) 51
TspGWI ACGGA 1 cut(s) 241
TspRI CASTG 1 cut(s) 211
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.