FvH4_3g30320

lipid-transfer protein DIR1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011680
Physical Location & Seq
Reverse (-)
23519982 .. 23520812
831 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30320.t2

Sequence Viewer

Length: 309 bp
ATGGCAAGGTTTAGTGTAGCTCTGTGGCAATGGGTGATGGTACTTCTGTTGATTGCACTACTGGAGGGAGCCCATGCTGCCTCGATCTGCAACATTGACTCTGCGCAGCTCAACTATTGCCGCCGGGCAGTGAGCGGCAAGTCGCCAACACCACCATCAAAGAAATGTTGTGGAGTTGTGCACCGAGCCAACCTGCCCTGCCTGTGTAACTACAAGACTGTGCTACCTTCCTTTGGAATCGACCCTGCACTAGCAATGGCGTTGCCCAAGAAATGTGGGATGAAAACACCACCGGAATGCGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

103

Amino Acids

10.96

Weight (kDa)

9.18

Isoelectric Point (pI)

48.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 22 - 99 2.7e-13 Probable lipid transfer
Tryp_alpha_amyl PF00234 30 - 100 1e-08 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011680)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55410 AT5G55410 AT5G55450 AT5G55460
fragaria_vesca FvH4_3g30320 FvH4_3g30320
malus_domestica MD11G1207300.v1.1
prunus_persica Prupe.4G228100_v2.0.a1
pyrus_communis pycom11g18050
rosa_chinensis RchiOBHm_Chr5g0056191
rosa_laevigata RLG00000035062
rosa_multiflora Rmu_sc0000680.1_g000025
rosa_roxburghii Rroxscaffold_1G00024100
rosa_rugosa Rorug05G0297900
rosa_samantha Rh5BG380100 Rh5CG402900 Rh5DG393100
rosa_wichuraiana Rw0G004430 Rw0G012670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 105
Acc36I ACCTGC 1 cut(s) 201
AccBSI CCGCTC 1 cut(s) 135
AciI CCGC 2 cut(s) 121, 135
AfaI GTAC 1 cut(s) 42
AfiI CCNNNNNNNGG 1 cut(s) 233
AluBI AGCT 2 cut(s) 20, 109
AluI AGCT 2 cut(s) 20, 109
Alw21I GWGCWC 1 cut(s) 183
Alw44I GTGCAC 1 cut(s) 179
ApaLI GTGCAC 1 cut(s) 179
ApeKI GCWGC 2 cut(s) 77, 106
AspLEI GCGC 1 cut(s) 106
AsuC2I CCSGG 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 46
BaeGI GKGCMC 1 cut(s) 183
BaeI ACNNNNGTAYC 2 cut(s) 32, 65
BanII GRGCYC 1 cut(s) 73
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 2 cut(s) 64, 118
BccI CCATC 2 cut(s) 31, 163
BcnI CCSGG 1 cut(s) 125
BfaI CTAG 1 cut(s) 251
BfuAI ACCTGC 1 cut(s) 201
BisI GCNGC 4 cut(s) 78, 107, 121, 136
BlsI GCNGC 4 cut(s) 79, 108, 122, 137
Bme1390I CCNGG 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 125
BpmI CTGGAG 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 125
BsaWI WCCGGW 1 cut(s) 292
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 66
Bse3DI GCAATG 2 cut(s) 35, 261
BseGI GGATG 1 cut(s) 285
BseLI CCNNNNNNNGG 1 cut(s) 233
BseMI GCAATG 2 cut(s) 35, 261
BseNI ACTGG 1 cut(s) 66
BseSI GKGCMC 1 cut(s) 183
BseXI GCAGC 2 cut(s) 64, 118
BsgI GTGCAG 1 cut(s) 231
BsiHKAI GWGCWC 1 cut(s) 183
BsiSI CCGG 2 cut(s) 124, 293
BslI CCNNNNNNNGG 1 cut(s) 233
BsmI GAATGC 1 cut(s) 302
Bsp1286I GDGCHC 2 cut(s) 73, 183
Bsp143I GATC 1 cut(s) 84
BspACI CCGC 2 cut(s) 121, 135
BspLI GGNNCC 1 cut(s) 70
BspMI ACCTGC 1 cut(s) 201
BsrBI CCGCTC 1 cut(s) 135
BsrDI GCAATG 2 cut(s) 35, 261
BsrI ACTGG 1 cut(s) 66
BssMI GATC 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 220
BstF5I GGATG 1 cut(s) 285
BstHHI GCGC 1 cut(s) 106
BstKTI GATC 1 cut(s) 87
BstMBI GATC 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 123
BstSLI GKGCMC 1 cut(s) 183
BstV1I GCAGC 2 cut(s) 64, 118
BtsCI GGATG 1 cut(s) 285
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 1 cut(s) 135
BveI ACCTGC 1 cut(s) 201
CfoI GCGC 1 cut(s) 106
Csp6I GTAC 1 cut(s) 41
CspCI CAANNNNNGTGG 2 cut(s) 256, 291
CviAII CATG 1 cut(s) 74
CviJI RGCY 4 cut(s) 20, 71, 109, 188
CviKI_1 RGCY 4 cut(s) 20, 71, 109, 188
CviQI GTAC 1 cut(s) 41
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 73
EcoT38I GRGCYC 1 cut(s) 73
FaeI CATG 1 cut(s) 77
FaiI YATR 1 cut(s) 75
FatI CATG 1 cut(s) 73
Fnu4HI GCNGC 4 cut(s) 78, 107, 121, 136
FokI GGATG 1 cut(s) 292
FriOI GRGCYC 1 cut(s) 73
Fsp4HI GCNGC 4 cut(s) 78, 107, 121, 136
FspBI CTAG 1 cut(s) 251
FspI TGCGCA 1 cut(s) 105
GlaI GCGC 1 cut(s) 105
GluI GCNGC 4 cut(s) 78, 107, 121, 136
GsuI CTGGAG 1 cut(s) 83
HapII CCGG 2 cut(s) 124, 293
HhaI GCGC 1 cut(s) 106
Hin1II CATG 1 cut(s) 77
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HinfI GANTC 2 cut(s) 98, 237
HpaII CCGG 2 cut(s) 124, 293
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 181
Hpy8I GTNNAC 1 cut(s) 181
HpyAV CCTTC 1 cut(s) 237
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4V TGCA 4 cut(s) 56, 90, 181, 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
Hsp92II CATG 1 cut(s) 77
HspAI GCGC 1 cut(s) 104
Kzo9I GATC 1 cut(s) 84
LmnI GCTCC 1 cut(s) 68
LpnPI CCDG 6 cut(s) 47, 137, 206, 211, 215, 258
Lsp1109I GCAGC 2 cut(s) 64, 118
MaeI CTAG 1 cut(s) 251
MaeIII GTNAC 1 cut(s) 206
MalI GATC 1 cut(s) 86
MbiI CCGCTC 1 cut(s) 135
MboI GATC 1 cut(s) 84
MhlI GDGCHC 2 cut(s) 73, 183
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 2 cut(s) 58, 91
MslI CAYNNNNRTG 1 cut(s) 295
MspI CCGG 2 cut(s) 124, 293
MspR9I CCNGG 1 cut(s) 125
Mva1269I GAATGC 1 cut(s) 302
MwoI GCNNNNNNNGC 1 cut(s) 77
NciI CCSGG 1 cut(s) 125
NdeII GATC 1 cut(s) 84
NlaIII CATG 1 cut(s) 77
NlaIV GGNNCC 1 cut(s) 70
NsbI TGCGCA 1 cut(s) 105
PctI GAATGC 1 cut(s) 302
PfeI GAWTC 1 cut(s) 237
PkrI GCNGC 4 cut(s) 79, 108, 122, 137
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 70
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
RseI CAYNNNNRTG 1 cut(s) 295
SatI GCNGC 4 cut(s) 78, 107, 121, 136
Sau3AI GATC 1 cut(s) 84
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 125
SduI GDGCHC 2 cut(s) 73, 183
SetI ASST 5 cut(s) 11, 22, 111, 195, 229
SmiMI CAYNNNNRTG 1 cut(s) 295
SsiI CCGC 2 cut(s) 121, 135
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 1 cut(s) 123
TaaI ACNGT 1 cut(s) 220
TaqI TCGA 2 cut(s) 83, 240
TauI GCSGC 2 cut(s) 123, 138
TfiI GAWTC 1 cut(s) 237
TscAI CASTG 1 cut(s) 135
TseI GCWGC 2 cut(s) 77, 106
TspDTI ATGAA 1 cut(s) 296
TspRI CASTG 1 cut(s) 135
VneI GTGCAC 1 cut(s) 179
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.