Prupe.4G228100_v2.0.a1

lipid-transfer protein DIR1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0011680
Physical Location & Seq
Forward (+)
14566890 .. 14568329
1440 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G228100.1

Sequence Viewer

Length: 315 bp
ATGGCAAGTACTTGTGAAGTGCGGTCCTTGCAATGGGTAATGGCGATTTTCTTGATAGCACTTGTGGGTGGAGCCAGGGCAGTCCCCATATGTAACATTGACTCCGCCAAGCTGAATGAATGTCGCCCGGCAGTGACCGGAAACTCACCAAAACCACCAACCAAGAAATGCTGTGACGTTGTCCACCAAGCCAACTTGCCCTGCCTCTGCAACTACAAGTCTGCCTTCCCTGCATTTGGGATCAACCCTGCGCTAGCTATGGCGTTGCCTAAGAAGTGTGGCATGAACACACCACGAGAATGCCATGTGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

105

Amino Acids

11.11

Weight (kDa)

8.97

Isoelectric Point (pI)

54.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011680)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G55410 AT5G55410 AT5G55450 AT5G55460
fragaria_vesca FvH4_3g30320 FvH4_3g30320
malus_domestica MD11G1207300.v1.1
prunus_persica Prupe.4G228100_v2.0.a1
pyrus_communis pycom11g18050
rosa_chinensis RchiOBHm_Chr5g0056191
rosa_laevigata RLG00000035062
rosa_multiflora Rmu_sc0000680.1_g000025
rosa_roxburghii Rroxscaffold_1G00024100
rosa_rugosa Rorug05G0297900
rosa_samantha Rh5BG380100 Rh5CG402900 Rh5DG393100
rosa_wichuraiana Rw0G004430 Rw0G012670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 22, 105
AclWI GGATC 1 cut(s) 248
AfaI GTAC 1 cut(s) 10
AfiI CCNNNNNNNGG 2 cut(s) 33, 236
AjnI CCWGG 1 cut(s) 74
AluBI AGCT 2 cut(s) 112, 257
AluI AGCT 2 cut(s) 112, 257
AlwI GGATC 1 cut(s) 248
AspLEI GCGC 1 cut(s) 253
AspS9I GGNCC 1 cut(s) 24
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 138
AsuNHI GCTAGC 1 cut(s) 253
AvaII GGWCC 1 cut(s) 24
BauI CACGAG 1 cut(s) 294
BciT130I CCWGG 1 cut(s) 76
BcnI CCSGG 1 cut(s) 128
BfaI CTAG 1 cut(s) 254
BmcAI AGTACT 1 cut(s) 10
Bme1390I CCNGG 2 cut(s) 76, 128
Bme18I GGWCC 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 73
BmrFI CCNGG 2 cut(s) 76, 128
BmtI GCTAGC 1 cut(s) 257
BpuMI CCSGG 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 75
BsaWI WCCGGW 1 cut(s) 137
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 2 cut(s) 33, 236
Bse3DI GCAATG 1 cut(s) 38
BseBI CCWGG 1 cut(s) 76
BseDI CCNNGG 1 cut(s) 75
BseLI CCNNNNNNNGG 2 cut(s) 33, 236
BseMI GCAATG 1 cut(s) 38
BsiSI CCGG 2 cut(s) 128, 138
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 2 cut(s) 33, 236
BsmFI GGGAC 1 cut(s) 68
BsmI GAATGC 1 cut(s) 305
Bsp143I GATC 1 cut(s) 240
BspACI CCGC 2 cut(s) 22, 105
BspLI GGNNCC 1 cut(s) 73
BspOI GCTAGC 1 cut(s) 257
BspPI GGATC 1 cut(s) 248
BsrDI GCAATG 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 1 cut(s) 240
BssSI CACGAG 1 cut(s) 294
Bst2BI CACGAG 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 270
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 1 cut(s) 243
BstMBI GATC 1 cut(s) 240
BstMWI GCNNNNNNNGC 2 cut(s) 28, 230
BstNI CCWGG 1 cut(s) 76
BstSCI CCNGG 2 cut(s) 74, 126
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 255
CfoI GCGC 1 cut(s) 253
Cfr13I GGNCC 1 cut(s) 24
Csp6I GTAC 1 cut(s) 9
CviAII CATG 2 cut(s) 283, 305
CviJI RGCY 4 cut(s) 74, 112, 191, 257
CviKI_1 RGCY 4 cut(s) 74, 112, 191, 257
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 1 cut(s) 270
DpnI GATC 1 cut(s) 242
DpnII GATC 1 cut(s) 240
EciI GGCGGA 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 74
FaeI CATG 2 cut(s) 286, 308
FaiI YATR 5 cut(s) 89, 91, 260, 284, 306
FalI AAGNNNNNCTT 2 cut(s) 209, 241
FaqI GGGAC 1 cut(s) 68
FatI CATG 2 cut(s) 282, 304
FauNDI CATATG 1 cut(s) 89
FspBI CTAG 1 cut(s) 254
GlaI GCGC 1 cut(s) 252
HapII CCGG 2 cut(s) 128, 138
HhaI GCGC 1 cut(s) 253
Hin1II CATG 2 cut(s) 286, 308
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HinfI GANTC 1 cut(s) 101
HpaII CCGG 2 cut(s) 128, 138
HphI GGTGA 1 cut(s) 138
Hpy166II GTNNAC 1 cut(s) 184
Hpy188III TCNNGA 1 cut(s) 52
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 235
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 3 cut(s) 31, 210, 233
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 230
HpyF3I CTNAG 1 cut(s) 270
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 2 cut(s) 286, 308
HspAI GCGC 1 cut(s) 251
Kzo9I GATC 1 cut(s) 240
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 7 cut(s) 61, 88, 141, 151, 214, 243, 261
MaeI CTAG 1 cut(s) 254
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 3 cut(s) 92, 133, 173
MalI GATC 1 cut(s) 242
MboI GATC 1 cut(s) 240
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 1 cut(s) 215
MslI CAYNNNNRTG 1 cut(s) 298
MspI CCGG 2 cut(s) 128, 138
MspR9I CCNGG 2 cut(s) 76, 128
Mva1269I GAATGC 1 cut(s) 305
MvaI CCWGG 1 cut(s) 76
MwoI GCNNNNNNNGC 2 cut(s) 28, 230
NciI CCSGG 1 cut(s) 128
NdeI CATATG 1 cut(s) 89
NdeII GATC 1 cut(s) 240
NheI GCTAGC 1 cut(s) 253
NlaIII CATG 2 cut(s) 286, 308
NlaIV GGNNCC 1 cut(s) 73
NmuCI GTSAC 2 cut(s) 133, 173
PctI GAATGC 1 cut(s) 305
PflFI GACNNNGTC 1 cut(s) 179
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 74
PspGI CCWGG 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 73
PspPI GGNCC 1 cut(s) 24
PsyI GACNNNGTC 1 cut(s) 179
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
RseI CAYNNNNRTG 1 cut(s) 298
Sau3AI GATC 1 cut(s) 240
Sau96I GGNCC 1 cut(s) 24
ScaI AGTACT 1 cut(s) 10
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 2 cut(s) 76, 128
SetI ASST 3 cut(s) 114, 180, 259
SinI GGWCC 1 cut(s) 24
SmiMI CAYNNNNRTG 1 cut(s) 298
SsiI CCGC 2 cut(s) 22, 105
SspMI CTAG 1 cut(s) 254
StyD4I CCNGG 2 cut(s) 74, 126
TaiI ACGT 1 cut(s) 180
TatI WGTACW 1 cut(s) 8
TscAI CASTG 1 cut(s) 138
TseFI GTSAC 2 cut(s) 133, 173
Tsp45I GTSAC 2 cut(s) 133, 173
TspDTI ATGAA 2 cut(s) 132, 299
TspRI CASTG 1 cut(s) 138
Tth111I GACNNNGTC 1 cut(s) 179
VpaK11BI GGWCC 1 cut(s) 24
XspI CTAG 1 cut(s) 254
ZrmI AGTACT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.