AT5G56010

heat shock protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
22681238 .. 22684252
3015 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G56010.1

Sequence Viewer

Length: 2100 bp
ATGGCGGACGCAGAAACCTTTGCTTTCCAAGCTGAGATCAACCAGTTGCTCTCCCTCATCATCAATACCTTTTACTCTAACAAGGAGATCTTCCTTCGTGAACTCATCAGTAACTCTTCTGATGCTTTGGACAAGATTAGGTTTGAGTCCTTGACAGACAAGAGCAAGCTCGATGGTCAGCCAGAGCTCTTCATTCACATCATTCCCGACAAGACTAACAACACCTTGACGATTATCGATAGTGGTATTGGGATGACCAAGGCTGATCTGGTGAACAACCTTGGAACAATTGCAAGATCTGGAACCAAAGAATTCATGGAGGCGTTGGCTGCTGGAGCTGATGTTAGCATGATTGGACAGTTTGGTGTTGGTTTCTACTCTGCTTACTTGGTTGCTGACAAGGTTGTTGTTACTACCAAGCACAATGACGATGAGCAGTACGTGTGGGAGTCTCAGGCCGGTGGATCTTTCACCGTCACCAGAGACACCTCTGGTGAGGCTCTTGGTAGAGGAACTAAGATGGTCCTTTACCTCAAGGAAGACCAGATGGAGTACATTGAGGAGCGAAGGCTTAAGGATTTGGTGAAGAAGCACTCTGAGTTCATCAGCTACCCAATCTCTCTCTGGATTGAGAAGACCATTGAGAAGGAGATCTCTGATGATGAAGAGGAGGAAGAGAAGAAGGATGAGGAAGGCAAGGTTGAGGAAGTTGATGAGGAGAAAGAAAAGGAGGAGAAGAAAAAGAAGAAGATTAAGGAGGTTTCTCATGAGTGGGATTTGGTGAACAAGCAGAAACCGATTTGGATGAGGAAGCCAGAGGAGATCAACAAGGAGGAGTACGCTGCTTTCTACAAGAGTTTGAGCAATGACTGGGAAGAGCATTTGGCTGTGAAGCATTTCTCAGTTGAAGGACAGCTTGAGTTCAAAGCTATCCTCTTTGTTCCCAAGAGAGCTCCTTTTGATCTCTTTGACACTAAGAAGAAGCCCAACAACATCAAGCTCTATGTCCGTCGTGTCTTCATCATGGACAACTGTGAAGACATCATTCCTGAGTACCTTGGGTTTGTCAAGGGTATTGTTGACTCTGAAGATCTTCCTCTCAACATCTCAAGAGAAACATTGCAGCAGAACAAGATCCTCAAGGTCATCCGCAAGAACCTTGTGAAGAAGTGTCTTGAGCTCTTCTTTGAGATTGCTGAGAACAAGGAGGACTACAACAAGTTCTATGAGGCTTTCTCTAAGAACCTGAAGCTCGGTATCCATGAGGACTCCCAAAACAGAACCAAGATTGCTGAGTTGCTCCGTTACCACTCAACCAAGAGCGGTGATGAATTGACCAGTCTCAAGGACTACGTGACAAGGATGAAGGAAGGTCAGAACGATATCTTCTATATCACTGGTGAGAGCAAGAAGGCTGTTGAGAACTCTCCATTCCTTGAGAAGCTCAAGAAGAAGGGTATTGAAGTTCTCTACATGGTTGACGCTATCGATGAGTATGCTATTGGTCAGCTCAAGGAATTCGAAGGAAAGAAGCTTGTCTCTGCAACCAAGGAAGGTCTGAAACTGGATGAGACTGAAGACGAGAAGAAGAAGAAAGAAGAGCTCAAGGAGAAGTTTGAGGGACTCTGCAAAGTGATCAAGGACGTTTTGGGAGACAAGGTTGAGAAGGTTATCGTCTCTGACCGTGTTGTGGACTCACCCTGCTGTCTTGTAACAGGCGAGTATGGCTGGACTGCAAACATGGAGAGGATCATGAAAGCTCAAGCCTTGAGAGACAGCAGCATGGGTGGCTACATGTCGAGCAAGAAGACAATGGAGATTAACCCAGAGAACTCCATCATGGATGAGCTGAGAAAGAGAGCTGATGCAGACAAGAACGACAAGTCTGTGAAGGACCTTGTACTTCTTCTCTTTGAGACCGCTCTTCTCACTTCTGGTTTCAGCCTCGATGAGCCCAACACTTTCGGGAGCAGGATTCACAGGATGTTGAAGCTTGGATTGAGCATTGATGACGATGATGTTGTTGAAGCCGATGCTGACATGCCTCCACTTGAAGATGATGCCGATGCTGAAGGTAGCAAGATGGAGGAAGTTGACTAA

Protein Analysis

699

Amino Acids

80.05

Weight (kDa)

4.95

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HATPase_c PF02518 29 - 181 9.5e-07 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c_3 PF13589 30 - 145 5e-08 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HSP90 PF00183 184 - 689 3.4e-239 Hsp90 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 1323, 1922
AciI CCGC 4 cut(s) 5, 1150, 1323, 1920
AclWI GGATC 3 cut(s) 472, 1129, 1757
AcsI RAATTY 2 cut(s) 311, 1517
AcuI CTGAAG 4 cut(s) 1107, 1268, 1596, 2091
AfaI GTAC 5 cut(s) 440, 554, 839, 1055, 1902
AfiI CCNNNNNNNGG 1 cut(s) 1690
AflII CTTAAG 1 cut(s) 572
AflIII ACRYGT 2 cut(s) 441, 1794
AgsI TTSAA 6 cut(s) 908, 925, 1463, 1990, 2027, 2054
Alw21I GWGCWC 4 cut(s) 189, 955, 1182, 1605
Alw26I GTCTC 9 cut(s) 456, 477, 1346, 1543, 1565, 1647, 1681, 1767, 1910
AlwI GGATC 3 cut(s) 472, 1129, 1757
AoxI GGCC 1 cut(s) 456
ApeKI GCWGC 4 cut(s) 329, 842, 1123, 1779
ApoI RAATTY 2 cut(s) 311, 1517
Asp700I GAANNNNTTC 2 cut(s) 896, 1092
AspS9I GGNCC 2 cut(s) 523, 1894
AsuHPI GGTGA 9 cut(s) 283, 463, 469, 506, 595, 793, 1337, 1412, 1689
AsuII TTCGAA 1 cut(s) 1521
AvaII GGWCC 2 cut(s) 523, 1894
BanII GRGCYC 5 cut(s) 189, 955, 1182, 1605, 1956
BbsI GAAGAC 6 cut(s) 546, 641, 1009, 1044, 1584, 1814
Bbv12I GWGCWC 4 cut(s) 189, 955, 1182, 1605
BbvI GCAGC 4 cut(s) 316, 829, 1135, 1791
BccI CCATC 5 cut(s) 167, 514, 541, 1844, 2077
BcgI CGANNNNNNTGC 2 cut(s) 1478, 1512
BciVI GTATCC 1 cut(s) 1268
BclI TGATCA 1 cut(s) 1635
BcoDI GTCTC 9 cut(s) 456, 477, 1346, 1543, 1565, 1647, 1681, 1767, 1910
BfrI CTTAAG 1 cut(s) 572
BfuI GTATCC 1 cut(s) 1268
BglII AGATCT 4 cut(s) 87, 296, 651, 1090
BisI GCNGC 4 cut(s) 330, 843, 1124, 1780
BlsI GCNGC 4 cut(s) 331, 844, 1125, 1781
Bme18I GGWCC 2 cut(s) 523, 1894
BmgT120I GGNCC 2 cut(s) 523, 1894
BmiI GGNNCC 1 cut(s) 304
BmrI ACTGGG 1 cut(s) 880
BmsI GCATC 5 cut(s) 112, 1855, 2023, 2050, 2056
BmuI ACTGGG 1 cut(s) 880
BpiI GAAGAC 6 cut(s) 546, 641, 1009, 1044, 1584, 1814
BplI GAGNNNNNCTC 2 cut(s) 1220, 1252
BpmI CTGGAG 1 cut(s) 354
Bpu14I TTCGAA 1 cut(s) 1521
Bsa29I ATCGAT 2 cut(s) 237, 1488
BsaAI YACGTR 2 cut(s) 442, 1354
BsaI GGTCTC 1 cut(s) 1910
BsaJI CCNNGG 4 cut(s) 258, 280, 1057, 1548
BsaXI ACNNNNNCTCC 4 cut(s) 327, 357, 1644, 1674
Bsc4I CCNNNNNNNGG 1 cut(s) 1690
Bse118I RCCGGY 1 cut(s) 458
Bse1I ACTGG 5 cut(s) 43, 875, 1338, 1402, 1569
Bse3DI GCAATG 2 cut(s) 871, 1118
BseCI ATCGAT 2 cut(s) 237, 1488
BseDI CCNNGG 4 cut(s) 258, 280, 1057, 1548
BseGI GGATG 8 cut(s) 258, 691, 810, 1146, 1368, 1573, 1849, 1989
BseLI CCNNNNNNNGG 1 cut(s) 1690
BseMI GCAATG 2 cut(s) 871, 1118
BseMII CTCAG 8 cut(s) 24, 467, 588, 915, 1041, 1188, 1284, 1841
BseNI ACTGG 5 cut(s) 43, 875, 1338, 1402, 1569
BseRI GAGGAG 6 cut(s) 575, 683, 731, 746, 833, 848
BseXI GCAGC 4 cut(s) 316, 829, 1135, 1791
BshFI GGCC 1 cut(s) 458
BshVI ATCGAT 2 cut(s) 237, 1488
BsiHKAI GWGCWC 4 cut(s) 189, 955, 1182, 1605
BsiSI CCGG 1 cut(s) 459
BslFI GGGAC 1 cut(s) 1635
BslI CCNNNNNNNGG 1 cut(s) 1690
BsmAI GTCTC 9 cut(s) 456, 477, 1346, 1543, 1565, 1647, 1681, 1767, 1910
BsmBI CGTCTC 1 cut(s) 1681
BsmFI GGGAC 1 cut(s) 1635
BsnI GGCC 1 cut(s) 458
Bso31I GGTCTC 1 cut(s) 1910
Bsp119I TTCGAA 1 cut(s) 1521
Bsp1286I GDGCHC 5 cut(s) 189, 955, 1182, 1605, 1956
BspACI CCGC 4 cut(s) 5, 1150, 1323, 1920
BspANI GGCC 1 cut(s) 458
BspCNI CTCAG 8 cut(s) 25, 466, 589, 914, 1042, 1189, 1285, 1842
BspDI ATCGAT 2 cut(s) 237, 1488
BspHI TCATGA 2 cut(s) 766, 1752
BspLI GGNNCC 1 cut(s) 304
BspPI GGATC 3 cut(s) 472, 1129, 1757
BspQI GCTCTTC 5 cut(s) 194, 870, 1187, 1593, 1929
BspT104I TTCGAA 1 cut(s) 1521
BspTI CTTAAG 1 cut(s) 572
BspTNI GGTCTC 1 cut(s) 1910
BsrBI CCGCTC 2 cut(s) 1323, 1922
BsrDI GCAATG 2 cut(s) 871, 1118
BsrFI RCCGGY 1 cut(s) 458
BsrI ACTGG 5 cut(s) 43, 875, 1338, 1402, 1569
BssAI RCCGGY 1 cut(s) 458
BssECI CCNNGG 4 cut(s) 258, 280, 1057, 1548
BssT1I CCWWGG 4 cut(s) 258, 280, 1057, 1548
Bst4CI ACNGT 4 cut(s) 360, 475, 1034, 1685
Bst6I CTCTTC 8 cut(s) 121, 194, 660, 669, 870, 1187, 1593, 1929
BstAFI CTTAAG 1 cut(s) 572
BstBAI YACGTR 2 cut(s) 442, 1354
BstBI TTCGAA 1 cut(s) 1521
BstC8I GCNNGC 1 cut(s) 167
BstF5I GGATG 8 cut(s) 258, 691, 810, 1146, 1368, 1573, 1849, 1989
BstMAI GTCTC 9 cut(s) 456, 477, 1346, 1543, 1565, 1647, 1681, 1767, 1910
BstMWI GCNNNNNNNGC 5 cut(s) 29, 329, 335, 1725, 1788
BstNSI RCATGY 2 cut(s) 1798, 2044
BstV1I GCAGC 4 cut(s) 316, 829, 1135, 1791
BstV2I GAAGAC 6 cut(s) 546, 641, 1009, 1044, 1584, 1814
BstX2I RGATCY 6 cut(s) 87, 296, 464, 651, 1090, 1134
BstYI RGATCY 6 cut(s) 87, 296, 464, 651, 1090, 1134
Bsu15I ATCGAT 2 cut(s) 237, 1488
BsuI GTATCC 1 cut(s) 1268
BsuRI GGCC 1 cut(s) 458
BsuTUI ATCGAT 2 cut(s) 237, 1488
BtsCI GGATG 8 cut(s) 258, 691, 810, 1146, 1368, 1573, 1849, 1989
BtsIMutI CAGTG 1 cut(s) 1395
Cac8I GCNNGC 1 cut(s) 167
CciI TCATGA 2 cut(s) 766, 1752
Cfr10I RCCGGY 1 cut(s) 458
Cfr13I GGNCC 2 cut(s) 523, 1894
ClaI ATCGAT 2 cut(s) 237, 1488
CseI GACGC 2 cut(s) 17, 1490
Csp6I GTAC 5 cut(s) 439, 553, 838, 1054, 1901
CviQI GTAC 5 cut(s) 439, 553, 838, 1054, 1901
Eam1104I CTCTTC 8 cut(s) 121, 194, 660, 669, 870, 1187, 1593, 1929
EarI CTCTTC 8 cut(s) 121, 194, 660, 669, 870, 1187, 1593, 1929
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 4 cut(s) 187, 953, 1180, 1603
Eco130I CCWWGG 4 cut(s) 258, 280, 1057, 1548
Eco24I GRGCYC 5 cut(s) 189, 955, 1182, 1605, 1956
Eco31I GGTCTC 1 cut(s) 1910
Eco32I GATATC 1 cut(s) 1384
Eco47I GGWCC 2 cut(s) 523, 1894
Eco53kI GAGCTC 4 cut(s) 187, 953, 1180, 1603
Eco57I CTGAAG 4 cut(s) 1107, 1268, 1596, 2091
EcoICRI GAGCTC 4 cut(s) 187, 953, 1180, 1603
EcoO109I RGGNCCY 1 cut(s) 1894
EcoRI GAATTC 2 cut(s) 311, 1517
EcoRV GATATC 1 cut(s) 1384
EcoT14I CCWWGG 4 cut(s) 258, 280, 1057, 1548
EcoT38I GRGCYC 5 cut(s) 189, 955, 1182, 1605, 1956
ErhI CCWWGG 4 cut(s) 258, 280, 1057, 1548
Esp3I CGTCTC 1 cut(s) 1681
FalI AAGNNNNNCTT 4 cut(s) 74, 106, 900, 932
FaqI GGGAC 1 cut(s) 1635
FbaI TGATCA 1 cut(s) 1635
Fnu4HI GCNGC 4 cut(s) 330, 843, 1124, 1780
FokI GGATG 8 cut(s) 265, 698, 817, 1133, 1375, 1580, 1856, 1996
FriOI GRGCYC 5 cut(s) 189, 955, 1182, 1605, 1956
Fsp4HI GCNGC 4 cut(s) 330, 843, 1124, 1780
GluI GCNGC 4 cut(s) 330, 843, 1124, 1780
GsuI CTGGAG 1 cut(s) 354
HaeIII GGCC 1 cut(s) 458
HapII CCGG 1 cut(s) 459
HgaI GACGC 2 cut(s) 17, 1490
HincII GTYRAC 3 cut(s) 1081, 1480, 2095
HindII GTYRAC 3 cut(s) 1081, 1480, 2095
HindIII AAGCTT 2 cut(s) 1532, 1991
HinfI GANTC 7 cut(s) 146, 449, 1082, 1268, 1623, 1694, 1975
HpaII CCGG 1 cut(s) 459
HphI GGTGA 9 cut(s) 283, 463, 469, 506, 595, 793, 1337, 1412, 1689
Hpy166II GTNNAC 7 cut(s) 101, 274, 784, 1081, 1480, 1693, 2095
Hpy188I TCNGA 7 cut(s) 121, 598, 658, 1087, 1377, 1560, 1681
Hpy8I GTNNAC 7 cut(s) 101, 274, 784, 1081, 1480, 1693, 2095
Hpy99I CGWCG 1 cut(s) 1014
HpyCH4III ACNGT 4 cut(s) 360, 475, 1034, 1685
HpyCH4IV ACGT 3 cut(s) 441, 1353, 1644
HpyCH4V TGCA 6 cut(s) 293, 1123, 1544, 1629, 1736, 1868
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 329, 335, 1725, 1788
HpySE526I ACGT 3 cut(s) 441, 1353, 1644
Ksp22I TGATCA 1 cut(s) 1635
LguI GCTCTTC 5 cut(s) 194, 870, 1187, 1593, 1929
LmnI GCTCC 5 cut(s) 335, 562, 958, 1305, 1968
Lsp1109I GCAGC 4 cut(s) 316, 829, 1135, 1791
LweI GCATC 5 cut(s) 112, 1855, 2023, 2050, 2056
MaeII ACGT 3 cut(s) 441, 1353, 1644
MaeIII GTNAC 6 cut(s) 110, 409, 475, 1304, 1354, 1711
MbiI CCGCTC 2 cut(s) 1323, 1922
MfeI CAATTG 1 cut(s) 288
MflI RGATCY 6 cut(s) 87, 296, 464, 651, 1090, 1134
MhlI GDGCHC 5 cut(s) 189, 955, 1182, 1605, 1956
MluCI AATT 4 cut(s) 288, 311, 1331, 1517
MlyI GAGTC 6 cut(s) 155, 458, 1076, 1262, 1617, 1688
MroXI GAANNNNTTC 2 cut(s) 896, 1092
MseI TTAA 3 cut(s) 573, 753, 1821
MspCI CTTAAG 1 cut(s) 572
MspI CCGG 1 cut(s) 459
MunI CAATTG 1 cut(s) 288
MwoI GCNNNNNNNGC 5 cut(s) 29, 329, 335, 1725, 1788
NlaIV GGNNCC 1 cut(s) 304
NmuCI GTSAC 2 cut(s) 475, 1354
NspI RCATGY 2 cut(s) 1798, 2044
NspV TTCGAA 1 cut(s) 1521
PagI TCATGA 2 cut(s) 766, 1752
PciI ACATGT 1 cut(s) 1794
PciSI GCTCTTC 5 cut(s) 194, 870, 1187, 1593, 1929
PdmI GAANNNNTTC 2 cut(s) 896, 1092
PfeI GAWTC 1 cut(s) 1975
PkrI GCNGC 4 cut(s) 331, 844, 1125, 1781
PleI GAGTC 6 cut(s) 154, 457, 1076, 1262, 1617, 1688
PpsI GAGTC 6 cut(s) 154, 457, 1076, 1262, 1617, 1688
Ppu21I YACGTR 2 cut(s) 442, 1354
PpuMI RGGWCCY 1 cut(s) 1894
PscI ACATGT 1 cut(s) 1794
Psp124BI GAGCTC 4 cut(s) 189, 955, 1182, 1605
Psp5II RGGWCCY 1 cut(s) 1894
PspN4I GGNNCC 1 cut(s) 304
PspPI GGNCC 2 cut(s) 523, 1894
PspPPI RGGWCCY 1 cut(s) 1894
PsuI RGATCY 6 cut(s) 87, 296, 464, 651, 1090, 1134
RsaI GTAC 5 cut(s) 440, 554, 839, 1055, 1902
RsaNI GTAC 5 cut(s) 439, 553, 838, 1054, 1901
SacI GAGCTC 4 cut(s) 189, 955, 1182, 1605
SapI GCTCTTC 5 cut(s) 194, 870, 1187, 1593, 1929
SaqAI TTAA 3 cut(s) 573, 753, 1821
SatI GCNGC 4 cut(s) 330, 843, 1124, 1780
Sau96I GGNCC 2 cut(s) 523, 1894
SchI GAGTC 6 cut(s) 155, 458, 1076, 1262, 1617, 1688
SduI GDGCHC 5 cut(s) 189, 955, 1182, 1605, 1956
SfaNI GCATC 5 cut(s) 112, 1855, 2023, 2050, 2056
SfuI TTCGAA 1 cut(s) 1521
SinI GGWCC 2 cut(s) 523, 1894
Sse9I AATT 4 cut(s) 288, 311, 1331, 1517
SsiI CCGC 4 cut(s) 5, 1150, 1323, 1920
SstI GAGCTC 4 cut(s) 189, 955, 1182, 1605
StyI CCWWGG 4 cut(s) 258, 280, 1057, 1548
TaaI ACNGT 4 cut(s) 360, 475, 1034, 1685
TaiI ACGT 3 cut(s) 444, 1356, 1647
TaqI TCGA 6 cut(s) 171, 237, 1488, 1521, 1799, 1947
TasI AATT 4 cut(s) 288, 311, 1331, 1517
TatI WGTACW 2 cut(s) 552, 1900
TfiI GAWTC 1 cut(s) 1975
Tru1I TTAA 3 cut(s) 573, 753, 1821
Tru9I TTAA 3 cut(s) 573, 753, 1821
TscAI CASTG 1 cut(s) 1402
TseFI GTSAC 2 cut(s) 475, 1354
TseI GCWGC 4 cut(s) 329, 842, 1123, 1779
Tsp45I GTSAC 2 cut(s) 475, 1354
TspDTI ATGAA 8 cut(s) 181, 304, 592, 678, 1009, 1344, 1379, 1769
TspGWI ACGGA 2 cut(s) 998, 1292
TspRI CASTG 1 cut(s) 1402
Vha464I CTTAAG 1 cut(s) 572
VpaK11BI GGWCC 2 cut(s) 523, 1894
XapI RAATTY 2 cut(s) 311, 1517
XceI RCATGY 2 cut(s) 1798, 2044
XcmI CCANNNNNNNNNTGG 3 cut(s) 265, 313, 621
XmnI GAANNNNTTC 2 cut(s) 896, 1092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.