Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005956

Physical Location & Seq

Genomic Coordinates Forward (+)

82073170 .. 82076119

Gene Structure 2950 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036574

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCGGACACCGAGACGTTTGCCTTCCAGGCCGAGATCAACCAGCTTCTCAGCTTGATCATCAACACTTTCTACAGCAACAAGGAGATCTTTCTCCGTGAGCTTATCAGCAATGCCTCCGATGCTCTTGACAAGATTAGATTTGAGAGCTTGACTGACAAGAGCAAGCTTGAGTCTCAACCAGAGCTCTTTATCCACATTATCCCTGACAAGACCAACAACACTTTGACTATTATTGACAGTGGTATTGGGATGACAAAGGCTGATTTGGTCAACAACCTTGGTACCATTGCAAGGTCTGGAACCAAGGAATTCATGGAAGCCTTGGCTGCTGGTGCTGATGTTAGCATGATTGGTCAGTTTGGTGTTGGATTCTACTCTGCATATCTTGTTGCTGAGAAGGTCATTGTCACCGCCAAGCACAATGATGATGAGCAGTACATCTGGGAGTCTCAAGCTGGAGGATCTTTCACAGATGTGTTGGGTGACCGTGTTGAGAAGGTTGTTGTGTCTGACCGTGTGGTTGATTCTCCCTGCTGTTTGGTGACTGGCGAGTATGGCTGGACTGCCAACATGGAAAGGATCATGAAGGCTCAGGCTTTGAGGGATAACAGCATGGCTGGTTACATGTCTTCCAAGAAGACCATGGAGATCAACCCCGAGAACCCAATCATGGAGGAGCTCCGAAAGAGGGCTGATGCAGACAAGAATGACAAGTCAGTGAAGGACCTTGTGCTCCTTCTCTTTGAGACTGCCCTGCTTACCTCTGGGTTCAGCCTTGATGACCCCAACACCTTCGGCAACAGAATCCACAGGATGTTGAAGCTTGGACTGAGCATTGATGATGATGCCGTTGATGGTGATGCTGACATGCCCCCATTGGAGGATGTTGATGCCGAGGCTGAGAGCAAGATGGAGGAAGTCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009814 GO:0009816 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0034622 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0050896 GO:0051131 GO:0051592 GO:0051704 GO:0051707 GO:0051716 GO:0061077 GO:0065003 GO:0070013 GO:0070887 GO:0071241 GO:0071248 GO:0071277 GO:0071840 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04217 ko04612 ko04621 ko04626 ko04657 ko04659 ko04914 ko04915 ko05200 ko05215 ko05418 map04141 map04151 map04217 map04612 map04621 map04626 map04657 map04659 map04914 map04915 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

310

Amino Acids

34.18

Weight (kDa)

4.43

Isoelectric Point (pI)

29.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c	PF02518	29 - 146	5.2e-06	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c_3	PF13589	31 - 146	8.8e-08	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HSP90	PF00183	157 - 294	3.3e-54	Hsp90 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56000 AT5G56010 AT5G56030 AT5G56030
fragaria_vesca	FvH4_3g42240 FvH4_3g42240 FvH4_3g42240 FvH4_3g42240 FvH4_3g42240
malus_domestica	MD03G1036600.v1.1 MD09G1000500.v1.1 MD11G1037400.v1.1
prunus_persica	Prupe.6G028600_v2.0.a1
pyrus_communis	pycom03g02800 pycom11g03100
rosa_chinensis	RchiOBHm_Chr5g0075541
rosa_laevigata	RLG00000036574
rosa_multiflora	Rmu_sc0003437.1_g000003 Rmu_sc0024773.1_g000002
rosa_roxburghii	Rroxscaffold_1G00006010
rosa_rugosa	Rorug05G0440100 Rorug05G0440200
rosa_samantha	Rh5AG497500 Rh5BG518400 Rh5CG542000 Rh5DG530700
rosa_wichuraiana	Rw5G046120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	284
AccB1I	GGYRCC	1 cut(s)	284
AccI	GTMKAC	1 cut(s)	924
AciI	CCGC	2 cut(s)	5, 414
AclWI	GGATC	2 cut(s)	472, 590
AcsI	RAATTY	1 cut(s)	311
AfaI	GTAC	2 cut(s)	286, 440
AfiI	CCNNNNNNNGG	4 cut(s)	294, 673, 691, 883
AflIII	ACRYGT	1 cut(s)	627
AgsI	TTSAA	1 cut(s)	823
AjnI	CCWGG	1 cut(s)	27
AleI	CACNNNNGTG	1 cut(s)	476
AluBI	AGCT	9 cut(s)	46, 54, 103, 150, 169, 187, 458, 682, 826
AluI	AGCT	9 cut(s)	46, 54, 103, 150, 169, 187, 458, 682, 826
Alw21I	GWGCWC	3 cut(s)	189, 684, 738
Alw26I	GTCTC	4 cut(s)	8, 180, 456, 743
AlwI	GGATC	2 cut(s)	472, 590
Ama87I	CYCGRG	1 cut(s)	659
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	1 cut(s)	329
ApoI	RAATTY	1 cut(s)	311
Asp718I	GGTACC	1 cut(s)	284
AspS9I	GGNCC	1 cut(s)	727
AsuHPI	GGTGA	4 cut(s)	403, 497, 556, 872
AvaI	CYCGRG	1 cut(s)	659
AvaII	GGWCC	1 cut(s)	727
BaeI	ACNNNNGTAYC	2 cut(s)	268, 301
BanI	GGYRCC	1 cut(s)	284
BanII	GRGCYC	2 cut(s)	189, 684
BbsI	GAAGAC	2 cut(s)	624, 647
Bbv12I	GWGCWC	3 cut(s)	189, 684, 738
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	2 cut(s)	851, 907
BceAI	ACGGC	1 cut(s)	836
BcgI	CGANNNNNNTGC	1 cut(s)	36
BciT130I	CCWGG	1 cut(s)	29
BclI	TGATCA	1 cut(s)	57
BcoDI	GTCTC	4 cut(s)	8, 180, 456, 743
BfmI	CTRYAG	1 cut(s)	73
BglI	GCCNNNNNGGC	1 cut(s)	29
BglII	AGATCT	1 cut(s)	87
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme1390I	CCNGG	1 cut(s)	29
Bme18I	GGWCC	1 cut(s)	727
BmeT110I	CYCGRG	1 cut(s)	659
BmgT120I	GGNCC	1 cut(s)	727
BmiI	GGNNCC	2 cut(s)	286, 304
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	5 cut(s)	112, 688, 838, 853, 883
BpiI	GAAGAC	2 cut(s)	624, 647
BpmI	CTGGAG	1 cut(s)	480
Bpu10I	CCTNAGC	1 cut(s)	594
BpuEI	CTTGAG	2 cut(s)	191, 438
BsaJI	CCNNGG	5 cut(s)	280, 306, 324, 645, 897
Bsc4I	CCNNNNNNNGG	4 cut(s)	294, 673, 691, 883
Bse1I	ACTGG	1 cut(s)	553
Bse3DI	GCAATG	2 cut(s)	118, 288
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	5 cut(s)	280, 306, 324, 645, 897
BseGI	GGATG	3 cut(s)	258, 822, 892
BseLI	CCNNNNNNNGG	4 cut(s)	294, 673, 691, 883
BseMI	GCAATG	2 cut(s)	118, 288
BseMII	CTCAG	5 cut(s)	64, 387, 608, 824, 894
BseNI	ACTGG	1 cut(s)	553
BseRI	GAGGAG	1 cut(s)	692
BseXI	GCAGC	1 cut(s)	316
BshFI	GGCC	1 cut(s)	32
BshNI	GGYRCC	1 cut(s)	284
BsiHKAI	GWGCWC	3 cut(s)	189, 684, 738
BsiHKCI	CYCGRG	1 cut(s)	659
BslI	CCNNNNNNNGG	4 cut(s)	294, 673, 691, 883
BsmAI	GTCTC	4 cut(s)	8, 180, 456, 743
BsmBI	CGTCTC	1 cut(s)	8
BsnI	GGCC	1 cut(s)	32
BsoBI	CYCGRG	1 cut(s)	659
Bsp1286I	GDGCHC	3 cut(s)	189, 684, 738
Bsp143I	GATC	6 cut(s)	36, 57, 87, 464, 582, 651
Bsp19I	CCATGG	1 cut(s)	645
BspACI	CCGC	2 cut(s)	5, 414
BspANI	GGCC	1 cut(s)	32
BspCNI	CTCAG	5 cut(s)	63, 388, 607, 825, 895
BspHI	TCATGA	1 cut(s)	585
BspLI	GGNNCC	2 cut(s)	286, 304
BspPI	GGATC	2 cut(s)	472, 590
BspT107I	GGYRCC	1 cut(s)	284
BsrDI	GCAATG	2 cut(s)	118, 288
BsrI	ACTGG	1 cut(s)	553
BssECI	CCNNGG	5 cut(s)	280, 306, 324, 645, 897
BssMI	GATC	6 cut(s)	36, 57, 87, 464, 582, 651
BssT1I	CCWWGG	4 cut(s)	280, 306, 324, 645
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	3 cut(s)	242, 491, 518
BstC8I	GCNNGC	1 cut(s)	167
BstDEI	CTNAG	5 cut(s)	50, 396, 594, 833, 903
BstDSI	CCRYGG	1 cut(s)	645
BstEII	GGTNACC	1 cut(s)	485
BstF5I	GGATG	3 cut(s)	258, 822, 892
BstKTI	GATC	6 cut(s)	39, 60, 90, 467, 585, 654
BstMAI	GTCTC	4 cut(s)	8, 180, 456, 743
BstMBI	GATC	6 cut(s)	36, 57, 87, 464, 582, 651
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 122, 329, 335, 558
BstNI	CCWGG	1 cut(s)	29
BstNSI	RCATGY	2 cut(s)	631, 874
BstPI	GGTNACC	1 cut(s)	485
BstSCI	CCNGG	1 cut(s)	27
BstSFI	CTRYAG	1 cut(s)	73
BstV1I	GCAGC	1 cut(s)	316
BstV2I	GAAGAC	2 cut(s)	624, 647
BstX2I	RGATCY	2 cut(s)	87, 464
BstYI	RGATCY	2 cut(s)	87, 464
BsuRI	GGCC	1 cut(s)	32
BtgI	CCRYGG	1 cut(s)	645
BtsCI	GGATG	3 cut(s)	258, 822, 892
BtsIMutI	CAGTG	2 cut(s)	247, 726
Cac8I	GCNNGC	1 cut(s)	167
CciI	TCATGA	1 cut(s)	585
Cfr13I	GGNCC	1 cut(s)	727
Csp6I	GTAC	2 cut(s)	285, 439
CviAII	CATG	9 cut(s)	316, 349, 574, 586, 616, 628, 646, 673, 871
CviQI	GTAC	2 cut(s)	285, 439
DdeI	CTNAG	5 cut(s)	50, 396, 594, 833, 903
DpnI	GATC	6 cut(s)	38, 59, 89, 466, 584, 653
DpnII	GATC	6 cut(s)	36, 57, 87, 464, 582, 651
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	187, 682
Eco130I	CCWWGG	4 cut(s)	280, 306, 324, 645
Eco24I	GRGCYC	2 cut(s)	189, 684
Eco47I	GGWCC	1 cut(s)	727
Eco53kI	GAGCTC	2 cut(s)	187, 682
Eco88I	CYCGRG	1 cut(s)	659
Eco91I	GGTNACC	1 cut(s)	485
EcoICRI	GAGCTC	2 cut(s)	187, 682
EcoO109I	RGGNCCY	1 cut(s)	727
EcoO65I	GGTNACC	1 cut(s)	485
EcoRI	GAATTC	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	27
EcoT14I	CCWWGG	4 cut(s)	280, 306, 324, 645
EcoT38I	GRGCYC	2 cut(s)	189, 684
ErhI	CCWWGG	4 cut(s)	280, 306, 324, 645
Esp3I	CGTCTC	1 cut(s)	8
FaeI	CATG	9 cut(s)	319, 352, 577, 589, 619, 631, 649, 676, 874
FalI	AAGNNNNNCTT	2 cut(s)	74, 106
FatI	CATG	9 cut(s)	315, 348, 573, 585, 615, 627, 645, 672, 870
FbaI	TGATCA	1 cut(s)	57
FblI	GTMKAC	1 cut(s)	924
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	3 cut(s)	265, 829, 899
FriOI	GRGCYC	2 cut(s)	189, 684
Fsp4HI	GCNGC	1 cut(s)	330
GluI	GCNGC	1 cut(s)	330
GsuI	CTGGAG	1 cut(s)	480
HaeIII	GGCC	1 cut(s)	32
Hin1II	CATG	9 cut(s)	319, 352, 577, 589, 619, 631, 649, 676, 874
HincII	GTYRAC	2 cut(s)	274, 925
HindII	GTYRAC	2 cut(s)	274, 925
HindIII	AAGCTT	2 cut(s)	167, 824
HinfI	GANTC	5 cut(s)	173, 372, 449, 527, 807
HphI	GGTGA	4 cut(s)	403, 497, 556, 872
Hpy166II	GTNNAC	2 cut(s)	274, 925
Hpy188I	TCNGA	3 cut(s)	121, 514, 686
Hpy188III	TCNNGA	3 cut(s)	128, 300, 586
Hpy8I	GTNNAC	2 cut(s)	274, 925
HpyAV	CCTTC	7 cut(s)	34, 394, 493, 583, 718, 749, 805
HpyCH4III	ACNGT	3 cut(s)	242, 491, 518
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	3 cut(s)	293, 383, 701
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 122, 329, 335, 558
HpyF3I	CTNAG	5 cut(s)	50, 396, 594, 833, 903
HpySE526I	ACGT	1 cut(s)	17
Hsp92II	CATG	9 cut(s)	319, 352, 577, 589, 619, 631, 649, 676, 874
KpnI	GGTACC	1 cut(s)	288
Ksp22I	TGATCA	1 cut(s)	57
Kzo9I	GATC	6 cut(s)	36, 57, 87, 464, 582, 651
LmnI	GCTCC	3 cut(s)	679, 687, 741
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	5 cut(s)	112, 688, 838, 853, 883
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	4 cut(s)	409, 485, 544, 623
MalI	GATC	6 cut(s)	38, 59, 89, 466, 584, 653
MboI	GATC	6 cut(s)	36, 57, 87, 464, 582, 651
MboII	GAAGA	2 cut(s)	624, 652
MflI	RGATCY	2 cut(s)	87, 464
MhlI	GDGCHC	3 cut(s)	189, 684, 738
MluCI	AATT	1 cut(s)	311
MlyI	GAGTC	2 cut(s)	182, 458
MmeI	TCCRAC	1 cut(s)	349
MnlI	CCTC	9 cut(s)	127, 455, 597, 670, 684, 775, 877, 892, 910
MslI	CAYNNNNRTG	2 cut(s)	426, 476
MspR9I	CCNGG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	5 cut(s)	29, 122, 329, 335, 558
NcoI	CCATGG	1 cut(s)	645
NdeII	GATC	6 cut(s)	36, 57, 87, 464, 582, 651
NlaIII	CATG	9 cut(s)	319, 352, 577, 589, 619, 631, 649, 676, 874
NlaIV	GGNNCC	2 cut(s)	286, 304
NmeAIII	GCCGAG	2 cut(s)	58, 922
NmuCI	GTSAC	3 cut(s)	409, 485, 544
NspI	RCATGY	2 cut(s)	631, 874
OliI	CACNNNNGTG	1 cut(s)	476
PagI	TCATGA	1 cut(s)	585
PciI	ACATGT	1 cut(s)	627
PfeI	GAWTC	3 cut(s)	372, 527, 807
PkrI	GCNGC	1 cut(s)	331
PleI	GAGTC	2 cut(s)	181, 457
PpsI	GAGTC	2 cut(s)	181, 457
PpuMI	RGGWCCY	1 cut(s)	727
PscI	ACATGT	1 cut(s)	627
Psp124BI	GAGCTC	2 cut(s)	189, 684
Psp5II	RGGWCCY	1 cut(s)	727
Psp6I	CCWGG	1 cut(s)	27
PspEI	GGTNACC	1 cut(s)	485
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	286, 304
PspPI	GGNCC	1 cut(s)	727
PspPPI	RGGWCCY	1 cut(s)	727
PsuI	RGATCY	2 cut(s)	87, 464
RsaI	GTAC	2 cut(s)	286, 440
RsaNI	GTAC	2 cut(s)	285, 439
RseI	CAYNNNNRTG	2 cut(s)	426, 476
SacI	GAGCTC	2 cut(s)	189, 684
SalI	GTCGAC	1 cut(s)	923
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	6 cut(s)	36, 57, 87, 464, 582, 651
Sau96I	GGNCC	1 cut(s)	727
SchI	GAGTC	2 cut(s)	182, 458
ScrFI	CCNGG	1 cut(s)	29
SduI	GDGCHC	3 cut(s)	189, 684, 738
SfaNI	GCATC	5 cut(s)	112, 688, 838, 853, 883
SfcI	CTRYAG	1 cut(s)	73
SinI	GGWCC	1 cut(s)	727
SmiMI	CAYNNNNRTG	2 cut(s)	426, 476
SmlI	CTYRAG	2 cut(s)	170, 453
SmoI	CTYRAG	2 cut(s)	170, 453
Sse9I	AATT	1 cut(s)	311
SsiI	CCGC	2 cut(s)	5, 414
SstI	GAGCTC	2 cut(s)	189, 684
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	4 cut(s)	280, 306, 324, 645
TaaI	ACNGT	3 cut(s)	242, 491, 518
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	1 cut(s)	924
TasI	AATT	1 cut(s)	311
TatI	WGTACW	1 cut(s)	438
TfiI	GAWTC	3 cut(s)	372, 527, 807
TscAI	CASTG	2 cut(s)	247, 726
TseFI	GTSAC	3 cut(s)	409, 485, 544
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	3 cut(s)	409, 485, 544
TspDTI	ATGAA	2 cut(s)	304, 602
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	2 cut(s)	247, 726
VpaK11BI	GGWCC	1 cut(s)	727
XapI	RAATTY	1 cut(s)	311
XceI	RCATGY	2 cut(s)	631, 874
XcmI	CCANNNNNNNNNTGG	2 cut(s)	313, 643
XmiI	GTMKAC	1 cut(s)	924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.