Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005956

Physical Location & Seq

Genomic Coordinates Forward (+)

61161806 .. 61163269

Gene Structure 1464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0440100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAATAGTGGATTGGCGATTCTGCCCTTCTTCTTTCTTTCTGCTGTTTTACAGAATTGCCTGTCGTGCTACGTGTGTTTGCTTCACGCAACGACAGCACGGTCTGCTAAATCCGACTCCTACGCATCTTCCAGCTCCGGCGCCGACAAATCTCCCGATTCTAAGGATCCTTGGTGTTTCAATTTCTATGCGTACAAGGCCACATTCAGACAAAGTGGCTTTTGGGGAAAGCTAATAGATGCATACCGATTTTTACACAAAGAGAAGGACATGGAGCGTGGCTTCTCCTGGTCAGGAAATCCCATTGGAAAGTATAGAGGCAAAAGGATGAGGATAGACTACTTCATAGCTGCAGAGCAACTCAAAGATAGGATTGTTTCACGTGAGATGCACGGGCAAGGGATGAATTACAAGGTTCTTGAACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04217 ko04612 ko04621 ko04626 ko04657 ko04659 ko04914 ko04915 ko05200 ko05215 ko05418 map04141 map04151 map04217 map04612 map04621 map04626 map04657 map04659 map04914 map04915 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

142

Amino Acids

16.24

Weight (kDa)

9.32

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56000 AT5G56010 AT5G56030 AT5G56030
fragaria_vesca	FvH4_3g42240 FvH4_3g42240 FvH4_3g42240 FvH4_3g42240 FvH4_3g42240
malus_domestica	MD03G1036600.v1.1 MD09G1000500.v1.1 MD11G1037400.v1.1
prunus_persica	Prupe.6G028600_v2.0.a1
pyrus_communis	pycom03g02800 pycom11g03100
rosa_chinensis	RchiOBHm_Chr5g0075541
rosa_laevigata	RLG00000036574
rosa_multiflora	Rmu_sc0003437.1_g000003 Rmu_sc0024773.1_g000002
rosa_roxburghii	Rroxscaffold_1G00006010
rosa_rugosa	Rorug05G0440100 Rorug05G0440200
rosa_samantha	Rh5AG497500 Rh5BG518400 Rh5CG542000 Rh5DG530700
rosa_wichuraiana	Rw5G046120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	100
AccB1I	GGYRCC	1 cut(s)	140
AclWI	GGATC	2 cut(s)	161, 174
AcvI	CACGTG	1 cut(s)	383
AcyI	GRCGYC	1 cut(s)	141
AfaI	GTAC	1 cut(s)	194
AflIII	ACRYGT	1 cut(s)	72
AgsI	TTSAA	2 cut(s)	181, 422
AjnI	CCWGG	1 cut(s)	287
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AluBI	AGCT	3 cut(s)	135, 232, 350
AluI	AGCT	3 cut(s)	135, 232, 350
AlwI	GGATC	2 cut(s)	161, 174
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	143
BamHI	GGATCC	1 cut(s)	166
BanI	GGYRCC	1 cut(s)	140
BbrPI	CACGTG	1 cut(s)	383
BbvI	GCAGC	1 cut(s)	337
BciT130I	CCWGG	1 cut(s)	289
BfmI	CTRYAG	1 cut(s)	351
BfoI	RGCGCY	1 cut(s)	144
BisI	GCNGC	1 cut(s)	351
BlsI	GCNGC	1 cut(s)	352
Bme1390I	CCNGG	1 cut(s)	289
BmiI	GGNNCC	2 cut(s)	142, 168
BmrFI	CCNGG	1 cut(s)	289
BmsI	GCATC	3 cut(s)	134, 229, 378
BsaAI	YACGTR	2 cut(s)	73, 383
BsaHI	GRCGYC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	1 cut(s)	170
BseGI	GGATG	2 cut(s)	333, 408
BseXI	GCAGC	1 cut(s)	337
BshFI	GGCC	1 cut(s)	200
BshNI	GGYRCC	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	138
BsnI	GGCC	1 cut(s)	200
Bsp143I	GATC	1 cut(s)	166
BspANI	GGCC	1 cut(s)	200
BspLI	GGNNCC	2 cut(s)	142, 168
BspMAI	CTGCAG	1 cut(s)	355
BspPI	GGATC	2 cut(s)	161, 174
BspT107I	GGYRCC	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	1 cut(s)	166
BssNI	GRCGYC	1 cut(s)	141
BssT1I	CCWWGG	1 cut(s)	170
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	1 cut(s)	102
BstACI	GRCGYC	1 cut(s)	141
BstAPI	GCANNNNNTGC	1 cut(s)	104
BstBAI	YACGTR	2 cut(s)	73, 383
BstDEI	CTNAG	1 cut(s)	162
BstF5I	GGATG	2 cut(s)	333, 408
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 95, 104, 197
BstNI	CCWGG	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	287
BstSFI	CTRYAG	1 cut(s)	351
BstV1I	GCAGC	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	200
BtsCI	GGATG	2 cut(s)	333, 408
CfoI	GCGC	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	1 cut(s)	271
CviJI	RGCY	6 cut(s)	135, 200, 219, 232, 282, 350
CviKI_1	RGCY	6 cut(s)	135, 200, 219, 232, 282, 350
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	1 cut(s)	162
DinI	GGCGCC	1 cut(s)	142
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
DrdI	GACNNNNNNGTC	1 cut(s)	100
DseDI	GACNNNNNNGTC	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	170
Eco72I	CACGTG	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	170
EcoT22I	ATGCAT	1 cut(s)	244
EgeI	GGCGCC	1 cut(s)	142
EheI	GGCGCC	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	170
FaeI	CATG	1 cut(s)	274
FaiI	YATR	6 cut(s)	189, 244, 272, 315, 347, 427
FatI	CATG	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	351
FokI	GGATG	2 cut(s)	340, 415
Fsp4HI	GCNGC	1 cut(s)	351
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	1 cut(s)	351
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	200
HapII	CCGG	1 cut(s)	138
HhaI	GCGC	1 cut(s)	143
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	274
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HinfI	GANTC	3 cut(s)	19, 116, 158
HpaII	CCGG	1 cut(s)	138
Hpy188I	TCNGA	2 cut(s)	115, 209
Hpy188III	TCNNGA	3 cut(s)	155, 294, 419
HpyAV	CCTTC	2 cut(s)	37, 259
HpyCH4III	ACNGT	1 cut(s)	102
HpyCH4IV	ACGT	2 cut(s)	72, 382
HpyCH4V	TGCA	3 cut(s)	242, 353, 391
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 95, 104, 197
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	2 cut(s)	72, 382
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	274
HspAI	GCGC	1 cut(s)	141
KasI	GGCGCC	1 cut(s)	140
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	2 cut(s)	140, 274
LpnPI	CCDG	6 cut(s)	74, 145, 151, 274, 279, 301
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	3 cut(s)	134, 229, 378
MaeII	ACGT	2 cut(s)	72, 382
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	2 cut(s)	22, 120
MflI	RGATCY	1 cut(s)	166
MluCI	AATT	3 cut(s)	55, 181, 406
Mly113I	GGCGCC	1 cut(s)	141
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	2 cut(s)	311, 324
Mph1103I	ATGCAT	1 cut(s)	244
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	4 cut(s)	66, 95, 104, 197
NarI	GGCGCC	1 cut(s)	141
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	1 cut(s)	274
NlaIV	GGNNCC	2 cut(s)	142, 168
NsiI	ATGCAT	1 cut(s)	244
PfeI	GAWTC	2 cut(s)	19, 158
PkrI	GCNGC	1 cut(s)	352
PleI	GAGTC	1 cut(s)	110
PluTI	GGCGCC	1 cut(s)	144
PmaCI	CACGTG	1 cut(s)	383
PmlI	CACGTG	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	110
Ppu21I	YACGTR	2 cut(s)	73, 383
Psp6I	CCWGG	1 cut(s)	287
PspCI	CACGTG	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	2 cut(s)	142, 168
PstI	CTGCAG	1 cut(s)	355
PsuI	RGATCY	1 cut(s)	166
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
SatI	GCNGC	1 cut(s)	351
Sau3AI	GATC	1 cut(s)	166
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	289
SetI	ASST	6 cut(s)	75, 137, 234, 352, 385, 417
SfaNI	GCATC	3 cut(s)	134, 229, 378
SfcI	CTRYAG	1 cut(s)	351
SfoI	GGCGCC	1 cut(s)	142
Sse9I	AATT	3 cut(s)	55, 181, 406
SspDI	GGCGCC	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	287
StyI	CCWWGG	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	102
TaiI	ACGT	2 cut(s)	75, 385
TasI	AATT	3 cut(s)	55, 181, 406
TfiI	GAWTC	2 cut(s)	19, 158
TseI	GCWGC	1 cut(s)	350
TspDTI	ATGAA	3 cut(s)	17, 334, 419
Zsp2I	ATGCAT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.