AT5G56030

heat shock protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
22686473 .. 22689671
3199 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G56030.2

Sequence Viewer

Length: 2100 bp
ATGGCGGACGCTGAAACCTTTGCTTTCCAAGCTGAGATCAACCAGTTGCTTTCCCTCATCATCAATACCTTTTACTCTAACAAGGAGATCTTCCTCCGTGAACTCATCAGTAACTCTTCTGATGCTTTGGACAAGATTAGATTCGAGTCCTTGACGGACAAGAGCAAGCTCGATGGTCAGCCTGAGCTCTTCATTCACATCATTCCCGACAAGACTAACAACACCTTGACCATTATTGATAGTGGTATTGGCATGACCAAGGCTGATTTGGTCAACAACCTTGGAACAATTGCAAGATCTGGAACCAAGGAATTCATGGAAGCACTGGCTGCTGGAGCTGATGTTAGCATGATTGGTCAGTTTGGTGTTGGTTTCTACTCTGCTTACTTGGTTGCTGACAAGGTTGTTGTTACTACCAAGCACAATGACGATGAGCAGTACGTGTGGGAGTCTCAGGCCGGGGGATCTTTCACTGTGACCAGAGACACCTCTGGGGAGACTCTTGGTAGAGGAACAAAGATGGTTCTTTACCTCAAGGAAGACCAGTTGGAGTACCTTGAGGAGCGAAGGCTTAAGGATTTGGTGAAGAAGCACTCTGAGTTCATCAGCTACCCAATCTCTCTCTGGATTGAGAAGACCATTGAGAAGGAGATCTCTGATGATGAAGAGGAGGAAGAGAAGAAGGATGAGGAAGGCAAGGTTGAGGAAGTTGATGAGGAGAAAGAAAAGGAGGAGAAGAAAAAGAAGAAGATTAAGGAGGTTTCTCATGAGTGGGATTTGGTGAACAAGCAGAAGCCTATCTGGATGAGGAAGCCAGAGGAGATCAACAAGGAGGAGTACGCTGCTTTCTACAAGAGTCTCAGCAATGATTGGGAGGAGCATTTGGCTGTGAAGCATTTCTCTGTTGAAGGACAGCTTGAGTTCAAAGCTATCCTCTTTGTTCCCAAGAGAGCTCCTTTTGATCTCTTTGACACTAAGAAGAAGCCCAACAACATCAAGCTCTATGTCCGTCGTGTCTTCATCATGGACAACTGTGAAGACATCATCCCTGAGTACCTCGGATTTGTGAAAGGTATTGTCGACTCTGAAGATCTTCCTCTCAACATCTCGAGAGAGACATTGCAGCAGAACAAGATCCTCAAGGTCATCCGCAAGAACCTTGTGAAGAAGTGCCTTGAGCTCTTCTTTGAGATTGCTGAGAACAAGGAAGACTACAACAAGTTCTACGAGGCTTTCTCTAAGAACCTGAAGCTCGGTATCCATGAGGACTCCCAAAACAGAACCAAGATTGCTGAGTTGCTCCGTTACCACTCAACCAAGAGCGGTGATGAATTGACTAGTCTCAAGGACTACGTGACAAGGATGAAGGAAGGTCAGAACGATATCTTCTACATCACTGGTGAGAGCAAGAAGGCTGTTGAGAACTCTCCATTCCTTGAGAAGCTCAAGAAGAAAGGTATTGAAGTTCTCTACATGGTTGATGCGATTGATGAGTACGCTATTGGTCAGCTTAAGGAATTCGAGGGAAAGAAACTTGTTTCTGCAACCAAGGAAGGTCTGAAACTGGATGAGACCGAAGATGAAAAGAAGAAGAAAGAAGAGCTCAAGGAGAAGTTTGAAGGACTCTGCAAAGTGATCAAAGACGTTTTGGGTGACAAGGTCGAGAAGGTTATTGTTTCTGACCGTGTTGTGGACTCACCGTGCTGTCTTGTAACCGGCGAATACGGCTGGACTGCAAACATGGAGAGGATCATGAAAGCTCAAGCCTTGAGAGACAGCAGCATGGCTGGTTACATGTCGAGTAAGAAGACAATGGAGATTAATCCAGAGAACTCCATCATGGATGAGTTGAGAAAGCGAGCTGACGCAGACAAGAACGACAAGTCTGTGAAGGACCTTGTGCTTCTCCTCTTTGAGACCGCTCTTCTCACTTCTGGTTTCAGCCTTGATGAGCCAAACACTTTCGGAAGCAGGATCCACAGGATGCTGAAGCTTGGACTGAGCATTGATGACGATGATGCTGTTGAAGCCGATGCTGAGATGCCTCCCCTTGAAGACGATGCTGATGCCGAAGGTAGCAAGATGGAGGAAGTCGACTAA

Protein Analysis

699

Amino Acids

80.06

Weight (kDa)

4.95

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HATPase_c_3 PF13589 35 - 174 4.6e-07 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HSP90 PF00183 213 - 718 8.6e-240 Hsp90 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 1323, 1922
AccI GTMKAC 2 cut(s) 1080, 2094
AciI CCGC 4 cut(s) 5, 1150, 1323, 1920
AclWI GGATC 5 cut(s) 472, 1129, 1757, 1969, 1982
AcsI RAATTY 2 cut(s) 311, 1517
AcuI CTGAAG 3 cut(s) 1107, 1268, 2009
AfaI GTAC 5 cut(s) 440, 554, 839, 1055, 1496
AfiI CCNNNNNNNGG 1 cut(s) 1690
AflII CTTAAG 2 cut(s) 572, 1511
AflIII ACRYGT 2 cut(s) 441, 1794
AgsI TTSAA 6 cut(s) 908, 925, 1463, 1619, 2027, 2054
AhlI ACTAGT 1 cut(s) 1337
Alw21I GWGCWC 4 cut(s) 189, 955, 1182, 1605
Alw26I GTCTC 9 cut(s) 456, 477, 491, 863, 1109, 1346, 1565, 1767, 1910
AlwI GGATC 5 cut(s) 472, 1129, 1757, 1969, 1982
Ama87I CYCGRG 1 cut(s) 1108
AoxI GGCC 1 cut(s) 456
ApeKI GCWGC 4 cut(s) 329, 842, 1123, 1779
ApoI RAATTY 2 cut(s) 311, 1517
AseI ATTAAT 1 cut(s) 1821
Asp700I GAANNNNTTC 2 cut(s) 896, 1092
AspS9I GGNCC 1 cut(s) 1894
AsuC2I CCSGG 1 cut(s) 460
AsuHPI GGTGA 6 cut(s) 595, 793, 1337, 1412, 1664, 1689
AvaI CYCGRG 1 cut(s) 1108
AvaII GGWCC 1 cut(s) 1894
BamHI GGATCC 1 cut(s) 1974
BanII GRGCYC 4 cut(s) 189, 955, 1182, 1605
BbsI GAAGAC 7 cut(s) 546, 641, 1009, 1044, 1215, 1814, 2061
Bbv12I GWGCWC 4 cut(s) 189, 955, 1182, 1605
BbvI GCAGC 4 cut(s) 316, 829, 1135, 1791
BccI CCATC 4 cut(s) 167, 514, 1844, 2077
BceAI ACGGC 1 cut(s) 1741
BcgI CGANNNNNNTGC 2 cut(s) 2048, 2082
BciVI GTATCC 1 cut(s) 1268
BclI TGATCA 1 cut(s) 1635
BcnI CCSGG 1 cut(s) 460
BcoDI GTCTC 9 cut(s) 456, 477, 491, 863, 1109, 1346, 1565, 1767, 1910
BcuI ACTAGT 1 cut(s) 1337
BfaI CTAG 1 cut(s) 1338
BfrI CTTAAG 2 cut(s) 572, 1511
BfuI GTATCC 1 cut(s) 1268
BglII AGATCT 4 cut(s) 87, 296, 651, 1090
BisI GCNGC 4 cut(s) 330, 843, 1124, 1780
BlsI GCNGC 4 cut(s) 331, 844, 1125, 1781
Bme1390I CCNGG 1 cut(s) 460
Bme18I GGWCC 1 cut(s) 1894
BmeT110I CYCGRG 1 cut(s) 1108
BmgT120I GGNCC 1 cut(s) 1894
BmiI GGNNCC 2 cut(s) 304, 1976
BmrFI CCNGG 1 cut(s) 460
BmsI GCATC 8 cut(s) 112, 1471, 1974, 2008, 2023, 2031, 2050, 2056
BpiI GAAGAC 7 cut(s) 546, 641, 1009, 1044, 1215, 1814, 2061
BplI GAGNNNNNCTC 2 cut(s) 1220, 1252
BpmI CTGGAG 1 cut(s) 354
Bpu10I CCTNAGC 1 cut(s) 183
BpuMI CCSGG 1 cut(s) 460
BsaAI YACGTR 2 cut(s) 442, 1354
BsaI GGTCTC 2 cut(s) 1565, 1910
BsaJI CCNNGG 6 cut(s) 258, 280, 306, 459, 1057, 1548
BsaXI ACNNNNNCTCC 2 cut(s) 327, 357
Bsc4I CCNNNNNNNGG 1 cut(s) 1690
Bse118I RCCGGY 1 cut(s) 1715
Bse1I ACTGG 5 cut(s) 43, 330, 544, 1402, 1569
Bse3DI GCAATG 2 cut(s) 871, 1118
BseDI CCNNGG 6 cut(s) 258, 280, 306, 459, 1057, 1548
BseGI GGATG 8 cut(s) 691, 810, 1044, 1146, 1368, 1573, 1849, 1989
BseLI CCNNNNNNNGG 1 cut(s) 1690
BseMI GCAATG 2 cut(s) 871, 1118
BseNI ACTGG 5 cut(s) 43, 330, 544, 1402, 1569
BseRI GAGGAG 8 cut(s) 575, 683, 731, 746, 833, 848, 890, 1898
BseXI GCAGC 4 cut(s) 316, 829, 1135, 1791
BshFI GGCC 1 cut(s) 458
BsiHKAI GWGCWC 4 cut(s) 189, 955, 1182, 1605
BsiHKCI CYCGRG 1 cut(s) 1108
BsiSI CCGG 2 cut(s) 459, 1716
BslI CCNNNNNNNGG 1 cut(s) 1690
BsmAI GTCTC 9 cut(s) 456, 477, 491, 863, 1109, 1346, 1565, 1767, 1910
BsnI GGCC 1 cut(s) 458
Bso31I GGTCTC 2 cut(s) 1565, 1910
BsoBI CYCGRG 1 cut(s) 1108
Bsp1286I GDGCHC 4 cut(s) 189, 955, 1182, 1605
BspACI CCGC 4 cut(s) 5, 1150, 1323, 1920
BspANI GGCC 1 cut(s) 458
BspHI TCATGA 2 cut(s) 766, 1752
BspLI GGNNCC 2 cut(s) 304, 1976
BspPI GGATC 5 cut(s) 472, 1129, 1757, 1969, 1982
BspQI GCTCTTC 4 cut(s) 194, 1187, 1593, 1929
BspTI CTTAAG 2 cut(s) 572, 1511
BspTNI GGTCTC 2 cut(s) 1565, 1910
BsrBI CCGCTC 2 cut(s) 1323, 1922
BsrDI GCAATG 2 cut(s) 871, 1118
BsrFI RCCGGY 1 cut(s) 1715
BsrI ACTGG 5 cut(s) 43, 330, 544, 1402, 1569
BssAI RCCGGY 1 cut(s) 1715
BssECI CCNNGG 6 cut(s) 258, 280, 306, 459, 1057, 1548
BssT1I CCWWGG 4 cut(s) 258, 280, 306, 1548
Bst4CI ACNGT 4 cut(s) 475, 1034, 1685, 1701
Bst6I CTCTTC 7 cut(s) 121, 194, 660, 669, 1187, 1593, 1929
BstAFI CTTAAG 2 cut(s) 572, 1511
BstAPI GCANNNNNTGC 1 cut(s) 329
BstBAI YACGTR 2 cut(s) 442, 1354
BstC8I GCNNGC 2 cut(s) 167, 1860
BstF5I GGATG 8 cut(s) 691, 810, 1044, 1146, 1368, 1573, 1849, 1989
BstMAI GTCTC 9 cut(s) 456, 477, 491, 863, 1109, 1346, 1565, 1767, 1910
BstMWI GCNNNNNNNGC 5 cut(s) 29, 329, 335, 1725, 2027
BstNSI RCATGY 1 cut(s) 1798
BstSCI CCNGG 1 cut(s) 458
BstV1I GCAGC 4 cut(s) 316, 829, 1135, 1791
BstV2I GAAGAC 7 cut(s) 546, 641, 1009, 1044, 1215, 1814, 2061
BstX2I RGATCY 7 cut(s) 87, 296, 464, 651, 1090, 1134, 1974
BstYI RGATCY 7 cut(s) 87, 296, 464, 651, 1090, 1134, 1974
BsuI GTATCC 1 cut(s) 1268
BsuRI GGCC 1 cut(s) 458
BtsCI GGATG 8 cut(s) 691, 810, 1044, 1146, 1368, 1573, 1849, 1989
BtsIMutI CAGTG 3 cut(s) 323, 471, 1395
Cac8I GCNNGC 2 cut(s) 167, 1860
CciI TCATGA 2 cut(s) 766, 1752
Cfr10I RCCGGY 1 cut(s) 1715
Cfr13I GGNCC 1 cut(s) 1894
CseI GACGC 2 cut(s) 17, 1874
Csp6I GTAC 5 cut(s) 439, 553, 838, 1054, 1495
CviQI GTAC 5 cut(s) 439, 553, 838, 1054, 1495
Eam1104I CTCTTC 7 cut(s) 121, 194, 660, 669, 1187, 1593, 1929
EarI CTCTTC 7 cut(s) 121, 194, 660, 669, 1187, 1593, 1929
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 4 cut(s) 187, 953, 1180, 1603
Eco130I CCWWGG 4 cut(s) 258, 280, 306, 1548
Eco24I GRGCYC 4 cut(s) 189, 955, 1182, 1605
Eco31I GGTCTC 2 cut(s) 1565, 1910
Eco32I GATATC 1 cut(s) 1384
Eco47I GGWCC 1 cut(s) 1894
Eco53kI GAGCTC 4 cut(s) 187, 953, 1180, 1603
Eco57I CTGAAG 3 cut(s) 1107, 1268, 2009
Eco88I CYCGRG 1 cut(s) 1108
EcoICRI GAGCTC 4 cut(s) 187, 953, 1180, 1603
EcoO109I RGGNCCY 1 cut(s) 1894
EcoRI GAATTC 2 cut(s) 311, 1517
EcoRV GATATC 1 cut(s) 1384
EcoT14I CCWWGG 4 cut(s) 258, 280, 306, 1548
EcoT38I GRGCYC 4 cut(s) 189, 955, 1182, 1605
ErhI CCWWGG 4 cut(s) 258, 280, 306, 1548
FalI AAGNNNNNCTT 4 cut(s) 74, 106, 900, 932
FbaI TGATCA 1 cut(s) 1635
FblI GTMKAC 2 cut(s) 1080, 2094
Fnu4HI GCNGC 4 cut(s) 330, 843, 1124, 1780
FokI GGATG 8 cut(s) 698, 817, 1031, 1133, 1375, 1580, 1856, 1996
FriOI GRGCYC 4 cut(s) 189, 955, 1182, 1605
Fsp4HI GCNGC 4 cut(s) 330, 843, 1124, 1780
FspBI CTAG 1 cut(s) 1338
GluI GCNGC 4 cut(s) 330, 843, 1124, 1780
GsuI CTGGAG 1 cut(s) 354
HaeIII GGCC 1 cut(s) 458
HapII CCGG 2 cut(s) 459, 1716
HgaI GACGC 2 cut(s) 17, 1874
HincII GTYRAC 3 cut(s) 274, 1081, 2095
HindII GTYRAC 3 cut(s) 274, 1081, 2095
HindIII AAGCTT 1 cut(s) 1991
HinfI GANTC 9 cut(s) 141, 146, 449, 499, 856, 1082, 1268, 1623, 1694
HpaII CCGG 2 cut(s) 459, 1716
HphI GGTGA 6 cut(s) 595, 793, 1337, 1412, 1664, 1689
Hpy166II GTNNAC 6 cut(s) 101, 274, 784, 1081, 1693, 2095
Hpy188I TCNGA 9 cut(s) 121, 598, 658, 1061, 1087, 1377, 1560, 1681, 1967
Hpy8I GTNNAC 6 cut(s) 101, 274, 784, 1081, 1693, 2095
Hpy99I CGWCG 1 cut(s) 1014
HpyCH4III ACNGT 4 cut(s) 475, 1034, 1685, 1701
HpyCH4IV ACGT 3 cut(s) 441, 1353, 1644
HpyCH4V TGCA 5 cut(s) 293, 1123, 1544, 1629, 1736
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 329, 335, 1725, 2027
HpySE526I ACGT 3 cut(s) 441, 1353, 1644
Ksp22I TGATCA 1 cut(s) 1635
LguI GCTCTTC 4 cut(s) 194, 1187, 1593, 1929
LmnI GCTCC 5 cut(s) 335, 562, 877, 958, 1305
Lsp1109I GCAGC 4 cut(s) 316, 829, 1135, 1791
LweI GCATC 8 cut(s) 112, 1471, 1974, 2008, 2023, 2031, 2050, 2056
MaeI CTAG 1 cut(s) 1338
MaeII ACGT 3 cut(s) 441, 1353, 1644
MaeIII GTNAC 8 cut(s) 110, 409, 475, 1304, 1354, 1652, 1711, 1790
MbiI CCGCTC 2 cut(s) 1323, 1922
MfeI CAATTG 1 cut(s) 288
MflI RGATCY 7 cut(s) 87, 296, 464, 651, 1090, 1134, 1974
MhlI GDGCHC 4 cut(s) 189, 955, 1182, 1605
MluCI AATT 4 cut(s) 288, 311, 1331, 1517
MlyI GAGTC 8 cut(s) 155, 458, 493, 865, 1076, 1262, 1617, 1688
MmeI TCCRAC 1 cut(s) 528
MroXI GAANNNNTTC 2 cut(s) 896, 1092
MseI TTAA 4 cut(s) 573, 753, 1512, 1821
MspCI CTTAAG 2 cut(s) 572, 1511
MspI CCGG 2 cut(s) 459, 1716
MspR9I CCNGG 1 cut(s) 460
MunI CAATTG 1 cut(s) 288
MwoI GCNNNNNNNGC 5 cut(s) 29, 329, 335, 1725, 2027
NciI CCSGG 1 cut(s) 460
NlaIV GGNNCC 2 cut(s) 304, 1976
NmuCI GTSAC 3 cut(s) 475, 1354, 1652
NspI RCATGY 1 cut(s) 1798
PaeR7I CTCGAG 1 cut(s) 1108
PagI TCATGA 2 cut(s) 766, 1752
PciI ACATGT 1 cut(s) 1794
PciSI GCTCTTC 4 cut(s) 194, 1187, 1593, 1929
PdmI GAANNNNTTC 2 cut(s) 896, 1092
PfeI GAWTC 1 cut(s) 141
PflFI GACNNNGTC 1 cut(s) 1658
PkrI GCNGC 4 cut(s) 331, 844, 1125, 1781
PleI GAGTC 8 cut(s) 154, 457, 493, 864, 1076, 1262, 1617, 1688
PpsI GAGTC 8 cut(s) 154, 457, 493, 864, 1076, 1262, 1617, 1688
Ppu21I YACGTR 2 cut(s) 442, 1354
PpuMI RGGWCCY 1 cut(s) 1894
PscI ACATGT 1 cut(s) 1794
PshBI ATTAAT 1 cut(s) 1821
Psp124BI GAGCTC 4 cut(s) 189, 955, 1182, 1605
Psp5II RGGWCCY 1 cut(s) 1894
PspN4I GGNNCC 2 cut(s) 304, 1976
PspPI GGNCC 1 cut(s) 1894
PspPPI RGGWCCY 1 cut(s) 1894
PsuI RGATCY 7 cut(s) 87, 296, 464, 651, 1090, 1134, 1974
PsyI GACNNNGTC 1 cut(s) 1658
RsaI GTAC 5 cut(s) 440, 554, 839, 1055, 1496
RsaNI GTAC 5 cut(s) 439, 553, 838, 1054, 1495
SacI GAGCTC 4 cut(s) 189, 955, 1182, 1605
SalI GTCGAC 2 cut(s) 1079, 2093
SapI GCTCTTC 4 cut(s) 194, 1187, 1593, 1929
SaqAI TTAA 4 cut(s) 573, 753, 1512, 1821
SatI GCNGC 4 cut(s) 330, 843, 1124, 1780
Sau96I GGNCC 1 cut(s) 1894
SchI GAGTC 8 cut(s) 155, 458, 493, 865, 1076, 1262, 1617, 1688
ScrFI CCNGG 1 cut(s) 460
SduI GDGCHC 4 cut(s) 189, 955, 1182, 1605
SfaNI GCATC 8 cut(s) 112, 1471, 1974, 2008, 2023, 2031, 2050, 2056
Sfr274I CTCGAG 1 cut(s) 1108
SinI GGWCC 1 cut(s) 1894
SlaI CTCGAG 1 cut(s) 1108
SpeI ACTAGT 1 cut(s) 1337
Sse9I AATT 4 cut(s) 288, 311, 1331, 1517
SsiI CCGC 4 cut(s) 5, 1150, 1323, 1920
SspMI CTAG 1 cut(s) 1338
SstI GAGCTC 4 cut(s) 189, 955, 1182, 1605
StyD4I CCNGG 1 cut(s) 458
StyI CCWWGG 4 cut(s) 258, 280, 306, 1548
TaaI ACNGT 4 cut(s) 475, 1034, 1685, 1701
TaiI ACGT 3 cut(s) 444, 1356, 1647
TaqI TCGA 8 cut(s) 144, 171, 1080, 1109, 1521, 1662, 1799, 2094
TaqII GACCGA 1 cut(s) 1589
TasI AATT 4 cut(s) 288, 311, 1331, 1517
TfiI GAWTC 1 cut(s) 141
Tru1I TTAA 4 cut(s) 573, 753, 1512, 1821
Tru9I TTAA 4 cut(s) 573, 753, 1512, 1821
TscAI CASTG 3 cut(s) 330, 478, 1402
TseFI GTSAC 3 cut(s) 475, 1354, 1652
TseI GCWGC 4 cut(s) 329, 842, 1123, 1779
Tsp45I GTSAC 3 cut(s) 475, 1354, 1652
TspDTI ATGAA 9 cut(s) 181, 304, 592, 678, 1009, 1344, 1379, 1596, 1769
TspGWI ACGGA 4 cut(s) 86, 170, 998, 1292
TspRI CASTG 3 cut(s) 330, 478, 1402
Tth111I GACNNNGTC 1 cut(s) 1658
Vha464I CTTAAG 2 cut(s) 572, 1511
VpaK11BI GGWCC 1 cut(s) 1894
VspI ATTAAT 1 cut(s) 1821
XapI RAATTY 2 cut(s) 311, 1517
XceI RCATGY 1 cut(s) 1798
XcmI CCANNNNNNNNNTGG 3 cut(s) 265, 313, 621
XhoI CTCGAG 1 cut(s) 1108
XmiI GTMKAC 2 cut(s) 1080, 2094
XmnI GAANNNNTTC 2 cut(s) 896, 1092
XspI CTAG 1 cut(s) 1338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.