Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006067

Physical Location & Seq

Genomic Coordinates Reverse (-)

22985115 .. 22988110

Gene Structure 2996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G56850.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1656 bp

ATGCCAGGAACAATACAAGTTTCAGTTCTTGGTCTTATCGATGTTCAGACATCTTCTCCAGGTTCTTCAAACACTTCCATTAAAGTTGCTATGGGAAAGCTAGAGTATCAAACTTCAGATTCAGGAGACTACATTTTTCCAGTTACGAGGCTCCGAGAGAATTTGATTGTTACTCTGTTAGATGTTAATGGAAACCAAATATTACAGAAAGAGATAGAGACAAGAATGATAATAGAGAGTGGTTTCTTGGAAGAGAAACTTTCATTCAATGGCTATGGAAATGTTCAATTGAAAATGCAGTTTGTTCTCAGTGAGGAAGATCGAAATCGCATACGTTTCTTGAGACAATCTGCATTGCGAAAGAAGCATGAGGAGCTTGTCAATGGCAGTTCTTTTACCAAATCTAAAAGCATTGCTTCAGATTTGTCATCTTTAAGTTCAATGCAATCTCGAGACATCGTGGCTGTTGCTAGTTCAAAGACAAATCTTGGTCTGTCTCAAGAAACAAAGCTGAAAACTAATGCAGATAGAGATCCGGTTTCGTCAAATCTTATAATGTGGAAGCCTGAAGTAAAAGATTCAGTCGAGAAGACGAATATTCAACTATCTTCTTCAGATGTTTCTTCAAGCAAGAAGGTTCCCGAGGTTAAAAAACTCGAAAGTGTATCGTTAGTGAAGCAAGAAGATAAGGGTTTGAACAAACCAAGCAAGAAGCTTATAGAGGCCGAGAGTGTATTGTTAGTGAAGCAGGAAGATAAGGGATTGAGCAAACCGAGAAAGAAGTTTACAGAGGCTAAAACCCCCGAGAGTGTATCGTTAGTGAAGCAAGAAGAGACGGGTTTGAGCAAACCGGAAAGAAAGCCTAAACGGAAGTCAATGAGGCGGAGTATGTCAGATTCAAATTTGAACAATGTGCGGAAAATGATTAGCAACTTTGAGGTCAAAGTTACTCAGGATACAAAAATTAGGACAGCGAAGATTCAAACTGATTCTTGTAAAGATGCGGAGGAGAAAACTAAGGCGCAACCACCAGCGGAAAGCACTGTGAATCTAGAGAAATCGGAAGAAAGGAAGATAATAAGCTTTAATAATATGGAGAAGTCAGTGTGTAGTGATAACACAGATAGATGTGATGATTTAGTAATAGTTTCAAGAGATGAAAGGACAATGGATATAGAGGACAAGAGTCTTGAGCATAGCACTAGAAGAAGTGACTTGTTAAGTACGCAAAGACGAAGTTTGGTGGTAGAAGTAAGGGATGATGAGAAGAAACAGAACAAATCTGTGTGGTTGAAAGATTCTCAACTTGAGAATGCACGAGGATCTCGTCTCTGGATATTTCCAGATGAGGCAAAAGATTTGTGTTGCGAAACAGATTTAGGAACAAGACATTTGGATTTGGATTTAGCAGAAGCAAATTTGTTACAAAAAAGGATAGACGAGTCTACTAGGGAAAACATCGGTGAGAGGGGAAGCCGTTGCATAAACATCGCGAAAATAAATAGCAACAACAAGTGGACGAACATTGAGCGATCAAAGAAACAAAAGTCTGAGAACTCTGCAGAGTCAGAAAGTTCAGGACGACCTGTTGGGCAAGTGATGCGTGCGTTGATCGTGGTGGGTTTTGCAGGATTGGTGTTTTTGACACGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

551

Amino Acids

62.04

Weight (kDa)

9.09

Isoelectric Point (pI)

50.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56850 AT5G56850 AT5G56850 AT5G56850 AT5G56850 AT5G56850 AT5G56850 AT5G56850
fragaria_vesca	FvH4_1g07370 FvH4_1g07370 FvH4_1g07370 FvH4_1g07370
malus_domestica	MD02G1078500.v1.1 MD15G1206500.v1.1
prunus_persica	Prupe.7G210300_v2.0.a1
pyrus_communis	pycom02g06280 pycom15g18290
rosa_chinensis	RchiOBHm_Chr2g0093251
rosa_laevigata	RLG00000016383
rosa_multiflora	Rmu_sc0003724.1_g000019
rosa_roxburghii	Rroxscaffold_2G00148340
rosa_rugosa	Rorug02G0033900
rosa_samantha	Rh2AG080200 Rh2BG081200 Rh2CG083600 Rh2DG079100
rosa_wichuraiana	Rw2G006680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	554
AccI	GTMKAC	1 cut(s)	1445
AccII	CGCG	1 cut(s)	1493
AciI	CCGC	4 cut(s)	883, 916, 1004, 1034
AclWI	GGATC	2 cut(s)	527, 1330
AcsI	RAATTY	3 cut(s)	160, 901, 1417
AcuI	CTGAAG	4 cut(s)	99, 402, 588, 597
AfaI	GTAC	1 cut(s)	1225
AjnI	CCWGG	2 cut(s)	4, 58
AluBI	AGCT	5 cut(s)	100, 376, 511, 715, 1083
AluI	AGCT	5 cut(s)	100, 376, 511, 715, 1083
Alw26I	GTCTC	7 cut(s)	120, 212, 337, 447, 501, 827, 1334
AlwI	GGATC	2 cut(s)	527, 1330
Ama87I	CYCGRG	3 cut(s)	450, 641, 803
AoxI	GGCC	1 cut(s)	723
ApoI	RAATTY	3 cut(s)	160, 901, 1417
AspLEI	GCGC	1 cut(s)	1024
AsuHPI	GGTGA	1 cut(s)	1475
AvaI	CYCGRG	3 cut(s)	450, 641, 803
BauI	CACGAG	1 cut(s)	1317
BbsI	GAAGAC	1 cut(s)	596
BceAI	ACGGC	1 cut(s)	1461
BcgI	CGANNNNNNTGC	2 cut(s)	1471, 1505
BciT130I	CCWGG	2 cut(s)	6, 60
BciVI	GTATCC	1 cut(s)	949
BcoDI	GTCTC	7 cut(s)	120, 212, 337, 447, 501, 827, 1334
BfaI	CTAG	5 cut(s)	101, 471, 1052, 1203, 1449
BfmI	CTRYAG	1 cut(s)	1560
BfuI	GTATCC	1 cut(s)	949
Bme1390I	CCNGG	2 cut(s)	6, 60
BmeT110I	CYCGRG	3 cut(s)	450, 641, 803
BmiI	GGNNCC	2 cut(s)	152, 639
BmrFI	CCNGG	2 cut(s)	6, 60
BmsI	GCATC	2 cut(s)	991, 1590
BoxI	GACNNNNGTC	1 cut(s)	1185
BpiI	GAAGAC	1 cut(s)	596
BpmI	CTGGAG	1 cut(s)	42
BpuEI	CTTGAG	4 cut(s)	361, 483, 1211, 1328
Bsa29I	ATCGAT	1 cut(s)	39
BsaBI	GATNNNNATC	2 cut(s)	324, 531
BsaJI	CCNNGG	1 cut(s)	642
BsaWI	WCCGGW	2 cut(s)	535, 850
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bse1I	ACTGG	1 cut(s)	140
Bse3DI	GCAATG	2 cut(s)	353, 411
Bse8I	GATNNNNATC	2 cut(s)	324, 531
BseBI	CCWGG	2 cut(s)	6, 60
BseCI	ATCGAT	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	642
BseGI	GGATG	1 cut(s)	1264
BseJI	GATNNNNATC	2 cut(s)	324, 531
BseMI	GCAATG	2 cut(s)	353, 411
BseMII	CTCAG	3 cut(s)	322, 965, 1542
BseNI	ACTGG	1 cut(s)	140
BseRI	GAGGAG	2 cut(s)	386, 1022
Bsh1236I	CGCG	1 cut(s)	1493
BshFI	GGCC	1 cut(s)	725
BshVI	ATCGAT	1 cut(s)	39
BsiHKCI	CYCGRG	3 cut(s)	450, 641, 803
BsiSI	CCGG	2 cut(s)	536, 851
BsmAI	GTCTC	7 cut(s)	120, 212, 337, 447, 501, 827, 1334
BsmBI	CGTCTC	2 cut(s)	827, 1334
BsmI	GAATGC	1 cut(s)	1318
BsnI	GGCC	1 cut(s)	725
BsoBI	CYCGRG	3 cut(s)	450, 641, 803
Bsp143I	GATC	5 cut(s)	319, 532, 1322, 1532, 1611
Bsp68I	TCGCGA	1 cut(s)	1493
BspACI	CCGC	4 cut(s)	883, 916, 1004, 1034
BspANI	GGCC	1 cut(s)	725
BspCNI	CTCAG	3 cut(s)	321, 964, 1543
BspDI	ATCGAT	1 cut(s)	39
BspFNI	CGCG	1 cut(s)	1493
BspLI	GGNNCC	2 cut(s)	152, 639
BspMAI	CTGCAG	1 cut(s)	1564
BspPI	GGATC	2 cut(s)	527, 1330
BsrDI	GCAATG	2 cut(s)	353, 411
BsrI	ACTGG	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	642
BssMI	GATC	5 cut(s)	319, 532, 1322, 1532, 1611
BssSI	CACGAG	1 cut(s)	1317
Bst2BI	CACGAG	1 cut(s)	1317
Bst2UI	CCWGG	2 cut(s)	6, 60
Bst4CI	ACNGT	1 cut(s)	1045
Bst6I	CTCTTC	2 cut(s)	246, 825
BstAPI	GCANNNNNTGC	1 cut(s)	1600
BstC8I	GCNNGC	1 cut(s)	1605
BstDEI	CTNAG	4 cut(s)	308, 951, 1017, 1551
BstF5I	GGATG	1 cut(s)	1264
BstFNI	CGCG	1 cut(s)	1493
BstHHI	GCGC	1 cut(s)	1024
BstKTI	GATC	5 cut(s)	322, 535, 1325, 1535, 1614
BstMAI	GTCTC	7 cut(s)	120, 212, 337, 447, 501, 827, 1334
BstMBI	GATC	5 cut(s)	319, 532, 1322, 1532, 1611
BstMWI	GCNNNNNNNGC	3 cut(s)	364, 373, 1600
BstNI	CCWGG	2 cut(s)	6, 60
BstPAI	GACNNNNGTC	1 cut(s)	1185
BstSCI	CCNGG	2 cut(s)	4, 58
BstSFI	CTRYAG	1 cut(s)	1560
BstUI	CGCG	1 cut(s)	1493
BstV2I	GAAGAC	1 cut(s)	596
BstX2I	RGATCY	2 cut(s)	532, 1322
BstYI	RGATCY	2 cut(s)	532, 1322
Bsu15I	ATCGAT	1 cut(s)	39
BsuI	GTATCC	1 cut(s)	949
BsuRI	GGCC	1 cut(s)	725
BsuTUI	ATCGAT	1 cut(s)	39
BtgZI	GCGATG	1 cut(s)	1474
BtsCI	GGATG	1 cut(s)	1264
BtsIMutI	CAGTG	3 cut(s)	316, 1041, 1110
BtuMI	TCGCGA	1 cut(s)	1493
Cac8I	GCNNGC	1 cut(s)	1605
CfoI	GCGC	1 cut(s)	1024
ClaI	ATCGAT	1 cut(s)	39
Csp6I	GTAC	1 cut(s)	1224
CviAII	CATG	1 cut(s)	368
CviQI	GTAC	1 cut(s)	1224
DdeI	CTNAG	4 cut(s)	308, 951, 1017, 1551
DpnI	GATC	5 cut(s)	321, 534, 1324, 1534, 1613
DpnII	GATC	5 cut(s)	319, 532, 1322, 1532, 1611
Eam1104I	CTCTTC	2 cut(s)	246, 825
EarI	CTCTTC	2 cut(s)	246, 825
EciI	GGCGGA	1 cut(s)	898
Eco57I	CTGAAG	4 cut(s)	99, 402, 588, 597
Eco88I	CYCGRG	3 cut(s)	450, 641, 803
EcoRII	CCWGG	2 cut(s)	4, 58
Esp3I	CGTCTC	2 cut(s)	827, 1334
FaeI	CATG	1 cut(s)	371
FalI	AAGNNNNNCTT	4 cut(s)	243, 275, 400, 432
FatI	CATG	1 cut(s)	367
FblI	GTMKAC	1 cut(s)	1445
FokI	GGATG	1 cut(s)	1271
FspBI	CTAG	5 cut(s)	101, 471, 1052, 1203, 1449
GlaI	GCGC	1 cut(s)	1023
GsuI	CTGGAG	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	725
HapII	CCGG	2 cut(s)	536, 851
HhaI	GCGC	1 cut(s)	1024
Hin1II	CATG	1 cut(s)	371
Hin6I	GCGC	1 cut(s)	1022
HinP1I	GCGC	1 cut(s)	1022
HindIII	AAGCTT	2 cut(s)	713, 1081
HpaII	CCGG	2 cut(s)	536, 851
HphI	GGTGA	1 cut(s)	1475
Hpy166II	GTNNAC	3 cut(s)	786, 1446, 1518
Hpy188I	TCNGA	9 cut(s)	48, 118, 155, 421, 616, 895, 1063, 1552, 1570
Hpy8I	GTNNAC	3 cut(s)	786, 1446, 1518
HpyAV	CCTTC	1 cut(s)	628
HpyCH4III	ACNGT	1 cut(s)	1045
HpyCH4IV	ACGT	1 cut(s)	334
HpyCH4V	TGCA	8 cut(s)	298, 353, 445, 524, 1316, 1482, 1562, 1628
HpyF10VI	GCNNNNNNNGC	3 cut(s)	364, 373, 1600
HpyF3I	CTNAG	4 cut(s)	308, 951, 1017, 1551
HpySE526I	ACGT	1 cut(s)	334
Hsp92II	CATG	1 cut(s)	371
HspAI	GCGC	1 cut(s)	1022
Kzo9I	GATC	5 cut(s)	319, 532, 1322, 1532, 1611
LmnI	GCTCC	2 cut(s)	156, 373
LweI	GCATC	2 cut(s)	991, 1590
MaeI	CTAG	5 cut(s)	101, 471, 1052, 1203, 1449
MaeII	ACGT	1 cut(s)	334
MaeIII	GTNAC	5 cut(s)	142, 169, 946, 1211, 1422
MalI	GATC	5 cut(s)	321, 534, 1324, 1534, 1613
MboI	GATC	5 cut(s)	319, 532, 1322, 1532, 1611
MfeI	CAATTG	1 cut(s)	287
MflI	RGATCY	2 cut(s)	532, 1322
MluCI	AATT	5 cut(s)	160, 287, 901, 963, 1417
MlyI	GAGTC	3 cut(s)	1195, 1451, 1574
MseI	TTAA	6 cut(s)	81, 186, 434, 648, 1086, 1220
MslI	CAYNNNNRTG	1 cut(s)	1651
MspA1I	CMGCKG	1 cut(s)	1034
MspI	CCGG	2 cut(s)	536, 851
MspR9I	CCNGG	2 cut(s)	6, 60
MunI	CAATTG	1 cut(s)	287
Mva1269I	GAATGC	1 cut(s)	1318
MvaI	CCWGG	2 cut(s)	6, 60
MvnI	CGCG	1 cut(s)	1493
MwoI	GCNNNNNNNGC	3 cut(s)	364, 373, 1600
NdeII	GATC	5 cut(s)	319, 532, 1322, 1532, 1611
NlaIII	CATG	1 cut(s)	371
NlaIV	GGNNCC	2 cut(s)	152, 639
NmeAIII	GCCGAG	1 cut(s)	751
NmuCI	GTSAC	1 cut(s)	1211
NruI	TCGCGA	1 cut(s)	1493
PaeR7I	CTCGAG	1 cut(s)	450
PcsI	WCGNNNNNNNCGW	1 cut(s)	1324
PctI	GAATGC	1 cut(s)	1318
PfeI	GAWTC	7 cut(s)	119, 578, 896, 979, 989, 1048, 1298
PleI	GAGTC	3 cut(s)	1194, 1450, 1573
PpsI	GAGTC	3 cut(s)	1194, 1450, 1573
PshAI	GACNNNNGTC	1 cut(s)	1185
PsiI	TTATAA	1 cut(s)	554
Psp6I	CCWGG	2 cut(s)	4, 58
PspGI	CCWGG	2 cut(s)	4, 58
PspN4I	GGNNCC	2 cut(s)	152, 639
PstI	CTGCAG	1 cut(s)	1564
PsuI	RGATCY	2 cut(s)	532, 1322
RruI	TCGCGA	1 cut(s)	1493
RsaI	GTAC	1 cut(s)	1225
RsaNI	GTAC	1 cut(s)	1224
RseI	CAYNNNNRTG	1 cut(s)	1651
SaqAI	TTAA	6 cut(s)	81, 186, 434, 648, 1086, 1220
Sau3AI	GATC	5 cut(s)	319, 532, 1322, 1532, 1611
SchI	GAGTC	3 cut(s)	1195, 1451, 1574
ScrFI	CCNGG	2 cut(s)	6, 60
SfaNI	GCATC	2 cut(s)	991, 1590
SfcI	CTRYAG	1 cut(s)	1560
Sfr274I	CTCGAG	1 cut(s)	450
SlaI	CTCGAG	1 cut(s)	450
SmiMI	CAYNNNNRTG	1 cut(s)	1651
SmlI	CTYRAG	5 cut(s)	340, 450, 498, 1190, 1307
SmoI	CTYRAG	5 cut(s)	340, 450, 498, 1190, 1307
Sse9I	AATT	5 cut(s)	160, 287, 901, 963, 1417
SsiI	CCGC	4 cut(s)	883, 916, 1004, 1034
SspI	AATATT	2 cut(s)	201, 598
SspMI	CTAG	5 cut(s)	101, 471, 1052, 1203, 1449
StyD4I	CCNGG	2 cut(s)	4, 58
TaaI	ACNGT	1 cut(s)	1045
TaiI	ACGT	1 cut(s)	337
TaqI	TCGA	5 cut(s)	39, 322, 451, 585, 657
TasI	AATT	5 cut(s)	160, 287, 901, 963, 1417
TfiI	GAWTC	7 cut(s)	119, 578, 896, 979, 989, 1048, 1298
Tru1I	TTAA	6 cut(s)	81, 186, 434, 648, 1086, 1220
Tru9I	TTAA	6 cut(s)	81, 186, 434, 648, 1086, 1220
TscAI	CASTG	3 cut(s)	316, 1048, 1110
TseFI	GTSAC	1 cut(s)	1211
Tsp45I	GTSAC	1 cut(s)	1211
TspDTI	ATGAA	2 cut(s)	252, 1173
TspGWI	ACGGA	1 cut(s)	883
TspRI	CASTG	3 cut(s)	316, 1048, 1110
XapI	RAATTY	3 cut(s)	160, 901, 1417
XbaI	TCTAGA	1 cut(s)	1051
XhoI	CTCGAG	1 cut(s)	450
XmiI	GTMKAC	1 cut(s)	1445
XspI	CTAG	5 cut(s)	101, 471, 1052, 1203, 1449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.