Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006067

Physical Location & Seq

Genomic Coordinates Reverse (-)

3909195 .. 3912619

Gene Structure 3425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g07370.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1644 bp

ATGCCAGGAACCATCTTGGTTTCAGTTCTTAAATTCATGGACCTGCCGTCTTCATCATCATCTTCTTCAACATCAATAAAGGTTTCTTTGGGGCCAAGATCAGAGTTCCAAATTTGGGAGAGTAGAGACTTGTCCTTCCCATTGACGACTCTTCGGGACAACATGCTTGTTATTCTTCAAGATTCTGAAGGGAATCAGATATCAGAAACAGCTATTGAGACCAGGTCCATAGTTGAAAAGGGTCTTTGGGATGACTTCTTTCCCCTCAAAGGAGGTGGGTTTCTGCATTTGAAGTTGCAGTTTGTACTCAGTGAAGAAGAACGCAATCAAATCCGTATGATGCGAGAATCTGCAGTGAAAAAGAAGCACGGGGAGTTCATTCATAGCAGTCCCATGACCAATAGTGATGCAGATAGGAATGCAGAGACTTCATCAGCCATCACTGTGAAGCAAAGTGTTAATTTGTCTCCAACTGAATTGAGTCGCGGGGGTTTAGTTGATAACATCAATATCCAACCACTTCCTACTATGATTCCTGCTGAAGCAATTTGCGCTGATGAACCTGCAAGGTTATTAAGAGCCTCGCAACCAGTTATTGGTATAACAAATCTTCCTAAGCTTCAGGAAGATGAGAATTGCAAACTCGAAAAGCAGCAGAGCCCACTGAAGAAAAGTTCCAGCGTAAAGAACATGATAAGTGCCTTTGAAACTGGTTTAGCTGAGGATAAGAAGCCTCACATCAAACCATCACCGATGAAAGTTCAATCAAACAAAACTTTAACAGGCAATTTTCCGAAGAACCAGAACTTAAAAGAAGACAAGAAGAAAGTAAATACAGAAACTTCAGAGTCAGTATCAAAACGGGCAGTGAATTCTTTACCTCCAGGACAGTTGCAACATGACAGGACATATGGTGGAAGCAGTGAGAAAAATATATCACTTGAAGCTTTAGGTGGGACTAAATCATCACATGACACAGGTATTAAGAGTAGATCCAAACTATTACATCAAGAAGTTCACATAAATGAGGATAAGGTCCTCACTGATTTCAGTACAACATCATCAGAAATAGTAGTTAAAGTTTCAGAGAGGGTACTTGATGATCATAGACACCAACCTAGTAAGATGCTCCATGGAAAGAGAGATTCAGGTGGCAGTCCAGTTATAGAGGAAAGTCATCAGCCAGAAATCTCTTCAAGAAATTCTCAAAAGTCCAACATTCAAGGAGTTGCAGCCCAAATATGCACTTCAACAGCAAAATGCGAAGACAGGCACAATCCTTTTGAGAGATCTGGTGGATGGATATTCCCAGATGAAGCAATACATTTTTGTATAACAACTAGTGGTAAAAAGGTGATGGATTTTCTAGGAGGTCACAATTTGATAAAGCCAGGTATGCATCAAGATGGGAAGAGTTTGTCTCCTCCAGAAAATGCAGTAGACCAGCAGGAAAACGCGGATAGCAGTAATGGTAATGAAGTGAACAGAAATGAGAAGAAGAACAGACCAAGAGAACAACATAAGGTTCAGAAATCAGAAGAAACAGAAACTTCTGGAGTGGCAGTTGGACAGGCAATAAAAGCTGCAATAATGATTGGATTTGGAACACTTGTTCTCCTCACTAGACAACGAAAAAATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

548

Amino Acids

60.35

Weight (kDa)

8.39

Isoelectric Point (pI)

59.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56850 AT5G56850 AT5G56850 AT5G56850 AT5G56850 AT5G56850 AT5G56850 AT5G56850
fragaria_vesca	FvH4_1g07370 FvH4_1g07370 FvH4_1g07370 FvH4_1g07370
malus_domestica	MD02G1078500.v1.1 MD15G1206500.v1.1
prunus_persica	Prupe.7G210300_v2.0.a1
pyrus_communis	pycom02g06280 pycom15g18290
rosa_chinensis	RchiOBHm_Chr2g0093251
rosa_laevigata	RLG00000016383
rosa_multiflora	Rmu_sc0003724.1_g000019
rosa_roxburghii	Rroxscaffold_2G00148340
rosa_rugosa	Rorug02G0033900
rosa_samantha	Rh2AG080200 Rh2BG081200 Rh2CG083600 Rh2DG079100
rosa_wichuraiana	Rw2G006680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	51, 571
AccB7I	CCANNNNNTGG	1 cut(s)	596
AccI	GTMKAC	1 cut(s)	1440
AccII	CGCG	2 cut(s)	486, 1457
AciI	CCGC	2 cut(s)	486, 1457
AclWI	GGATC	1 cut(s)	987
AcsI	RAATTY	4 cut(s)	32, 111, 871, 1201
AcuI	CTGAAG	5 cut(s)	207, 561, 605, 686, 828
AfaI	GTAC	3 cut(s)	306, 1054, 1095
AfiI	CCNNNNNNNGG	3 cut(s)	115, 269, 596
AhdI	GACNNNNNGTC	1 cut(s)	46
AhlI	ACTAGT	1 cut(s)	1340
AjnI	CCWGG	4 cut(s)	4, 221, 883, 1390
AloI	GAACNNNNNNTCC	2 cut(s)	1596, 1628
AluBI	AGCT	5 cut(s)	212, 619, 719, 947, 1583
AluI	AGCT	5 cut(s)	212, 619, 719, 947, 1583
Alw26I	GTCTC	5 cut(s)	120, 212, 419, 471, 1425
AlwI	GGATC	1 cut(s)	987
AoxI	GGCC	1 cut(s)	92
ApeKI	GCWGC	3 cut(s)	652, 1232, 1583
ApoI	RAATTY	4 cut(s)	32, 111, 871, 1201
AspLEI	GCGC	1 cut(s)	554
AspS9I	GGNCC	4 cut(s)	40, 92, 225, 1036
AsuHPI	GGTGA	2 cut(s)	741, 1366
AvaII	GGWCC	3 cut(s)	40, 225, 1036
BanII	GRGCYC	1 cut(s)	662
BbsI	GAAGAC	3 cut(s)	42, 822, 1272
BbvCI	CCTCAGC	1 cut(s)	720
BbvI	GCAGC	3 cut(s)	664, 1244, 1570
BccI	CCATC	6 cut(s)	20, 446, 754, 1293, 1351, 1400
BceAI	ACGGC	1 cut(s)	31
BciT130I	CCWGG	4 cut(s)	6, 223, 885, 1392
BclI	TGATCA	1 cut(s)	1102
BcoDI	GTCTC	5 cut(s)	120, 212, 419, 471, 1425
BcuI	ACTAGT	1 cut(s)	1340
BfaI	CTAG	4 cut(s)	1119, 1341, 1367, 1623
BfmI	CTRYAG	1 cut(s)	351
BfuAI	ACCTGC	2 cut(s)	51, 571
BglII	AGATCT	1 cut(s)	1289
BisI	GCNGC	3 cut(s)	653, 1233, 1584
BlsI	GCNGC	3 cut(s)	654, 1234, 1585
Bme1390I	CCNGG	4 cut(s)	6, 223, 885, 1392
Bme18I	GGWCC	3 cut(s)	40, 225, 1036
BmeRI	GACNNNNNGTC	1 cut(s)	46
BmgT120I	GGNCC	4 cut(s)	40, 92, 225, 1036
BmiI	GGNNCC	2 cut(s)	10, 93
BmrFI	CCNGG	4 cut(s)	6, 223, 885, 1392
BmsI	GCATC	4 cut(s)	330, 397, 1116, 1408
BpiI	GAAGAC	3 cut(s)	42, 822, 1272
BplI	GAGNNNNNCTC	2 cut(s)	1405, 1437
BpmI	CTGGAG	3 cut(s)	867, 1410, 1575
Bpu10I	CCTNAGC	2 cut(s)	615, 720
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	1132
BsaXI	ACNNNNNCTCC	4 cut(s)	1548, 1578, 1599, 1629
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 269, 596
Bse1I	ACTGG	3 cut(s)	590, 715, 1160
BseBI	CCWGG	4 cut(s)	6, 223, 885, 1392
BseDI	CCNNGG	1 cut(s)	1132
BseGI	GGATG	2 cut(s)	256, 1304
BseLI	CCNNNNNNNGG	3 cut(s)	115, 269, 596
BseMII	CTCAG	2 cut(s)	322, 711
BseNI	ACTGG	3 cut(s)	590, 715, 1160
BseRI	GAGGAG	2 cut(s)	1413, 1607
BseXI	GCAGC	3 cut(s)	664, 1244, 1570
Bsh1236I	CGCG	2 cut(s)	486, 1457
BshFI	GGCC	1 cut(s)	94
BslFI	GGGAC	3 cut(s)	170, 375, 970
BslI	CCNNNNNNNGG	3 cut(s)	115, 269, 596
BsmAI	GTCTC	5 cut(s)	120, 212, 419, 471, 1425
BsmFI	GGGAC	3 cut(s)	170, 375, 970
BsmI	GAATGC	1 cut(s)	424
BsnI	GGCC	1 cut(s)	94
Bso31I	GGTCTC	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	662
Bsp143I	GATC	4 cut(s)	98, 992, 1102, 1289
Bsp19I	CCATGG	1 cut(s)	1132
BspACI	CCGC	2 cut(s)	486, 1457
BspANI	GGCC	1 cut(s)	94
BspCNI	CTCAG	2 cut(s)	321, 712
BspFNI	CGCG	2 cut(s)	486, 1457
BspLI	GGNNCC	2 cut(s)	10, 93
BspMAI	CTGCAG	1 cut(s)	355
BspMI	ACCTGC	2 cut(s)	51, 571
BspPI	GGATC	1 cut(s)	987
BspTNI	GGTCTC	1 cut(s)	212
BsrI	ACTGG	3 cut(s)	590, 715, 1160
BssECI	CCNNGG	1 cut(s)	1132
BssMI	GATC	4 cut(s)	98, 992, 1102, 1289
BssT1I	CCWWGG	1 cut(s)	1132
Bst2UI	CCWGG	4 cut(s)	6, 223, 885, 1392
Bst4CI	ACNGT	2 cut(s)	445, 891
Bst6I	CTCTTC	3 cut(s)	156, 1198, 1406
BstDEI	CTNAG	3 cut(s)	308, 615, 720
BstDSI	CCRYGG	1 cut(s)	1132
BstF5I	GGATG	2 cut(s)	256, 1304
BstFNI	CGCG	2 cut(s)	486, 1457
BstHHI	GCGC	1 cut(s)	554
BstKTI	GATC	4 cut(s)	101, 995, 1105, 1292
BstMAI	GTCTC	5 cut(s)	120, 212, 419, 471, 1425
BstMBI	GATC	4 cut(s)	98, 992, 1102, 1289
BstMWI	GCNNNNNNNGC	3 cut(s)	551, 1396, 1580
BstNI	CCWGG	4 cut(s)	6, 223, 885, 1392
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	4 cut(s)	4, 221, 883, 1390
BstSFI	CTRYAG	1 cut(s)	351
BstUI	CGCG	2 cut(s)	486, 1457
BstV1I	GCAGC	3 cut(s)	664, 1244, 1570
BstV2I	GAAGAC	3 cut(s)	42, 822, 1272
BstX2I	RGATCY	2 cut(s)	992, 1289
BstYI	RGATCY	2 cut(s)	992, 1289
BsuRI	GGCC	1 cut(s)	94
BtgI	CCRYGG	1 cut(s)	1132
BtsCI	GGATG	2 cut(s)	256, 1304
BtsI	GCAGTG	3 cut(s)	360, 873, 928
BtsIMutI	CAGTG	7 cut(s)	316, 360, 441, 662, 873, 928, 1041
BveI	ACCTGC	2 cut(s)	51, 571
CfoI	GCGC	1 cut(s)	554
Cfr13I	GGNCC	4 cut(s)	40, 92, 225, 1036
CsiI	ACCWGGT	1 cut(s)	221
Csp6I	GTAC	3 cut(s)	305, 1053, 1094
CspCI	CAANNNNNGTGG	2 cut(s)	256, 291
CviAII	CATG	7 cut(s)	37, 163, 394, 691, 899, 971, 1133
CviQI	GTAC	3 cut(s)	305, 1053, 1094
DdeI	CTNAG	3 cut(s)	308, 615, 720
DpnI	GATC	4 cut(s)	100, 994, 1104, 1291
DpnII	GATC	4 cut(s)	98, 992, 1102, 1289
DriI	GACNNNNNGTC	1 cut(s)	46
Eam1104I	CTCTTC	3 cut(s)	156, 1198, 1406
Eam1105I	GACNNNNNGTC	1 cut(s)	46
EarI	CTCTTC	3 cut(s)	156, 1198, 1406
Eco130I	CCWWGG	1 cut(s)	1132
Eco24I	GRGCYC	1 cut(s)	662
Eco31I	GGTCTC	1 cut(s)	212
Eco32I	GATATC	1 cut(s)	201
Eco47I	GGWCC	3 cut(s)	40, 225, 1036
Eco57I	CTGAAG	5 cut(s)	207, 561, 605, 686, 828
EcoO109I	RGGNCCY	1 cut(s)	1036
EcoRI	GAATTC	1 cut(s)	871
EcoRII	CCWGG	4 cut(s)	4, 221, 883, 1390
EcoRV	GATATC	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	1132
EcoT22I	ATGCAT	1 cut(s)	1401
EcoT38I	GRGCYC	1 cut(s)	662
ErhI	CCWWGG	1 cut(s)	1132
FaeI	CATG	7 cut(s)	40, 166, 397, 694, 902, 974, 1136
FaqI	GGGAC	3 cut(s)	170, 375, 970
FatI	CATG	7 cut(s)	36, 162, 393, 690, 898, 970, 1132
FauI	CCCGC	1 cut(s)	479
FauNDI	CATATG	1 cut(s)	910
FbaI	TGATCA	1 cut(s)	1102
FblI	GTMKAC	1 cut(s)	1440
Fnu4HI	GCNGC	3 cut(s)	653, 1233, 1584
FokI	GGATG	2 cut(s)	263, 1311
FriOI	GRGCYC	1 cut(s)	662
Fsp4HI	GCNGC	3 cut(s)	653, 1233, 1584
FspBI	CTAG	4 cut(s)	1119, 1341, 1367, 1623
GlaI	GCGC	1 cut(s)	553
GluI	GCNGC	3 cut(s)	653, 1233, 1584
GsuI	CTGGAG	3 cut(s)	867, 1410, 1575
HaeIII	GGCC	1 cut(s)	94
HhaI	GCGC	1 cut(s)	554
Hin1II	CATG	7 cut(s)	40, 166, 397, 694, 902, 974, 1136
Hin6I	GCGC	1 cut(s)	552
HinP1I	GCGC	1 cut(s)	552
HindIII	AAGCTT	2 cut(s)	617, 945
HinfI	GANTC	8 cut(s)	148, 182, 193, 347, 481, 532, 848, 1145
HphI	GGTGA	2 cut(s)	741, 1366
Hpy166II	GTNNAC	3 cut(s)	1018, 1441, 1483
Hpy188III	TCNNGA	8 cut(s)	155, 179, 623, 1010, 1197, 1403, 1427, 1554
Hpy8I	GTNNAC	3 cut(s)	1018, 1441, 1483
HpyAV	CCTTC	2 cut(s)	145, 182
HpyCH4III	ACNGT	2 cut(s)	445, 891
HpyF10VI	GCNNNNNNNGC	3 cut(s)	551, 1396, 1580
HpyF3I	CTNAG	3 cut(s)	308, 615, 720
Hsp92II	CATG	7 cut(s)	40, 166, 397, 694, 902, 974, 1136
HspAI	GCGC	1 cut(s)	552
Ksp22I	TGATCA	1 cut(s)	1102
Kzo9I	GATC	4 cut(s)	98, 992, 1102, 1289
LmnI	GCTCC	1 cut(s)	1134
Lsp1109I	GCAGC	3 cut(s)	664, 1244, 1570
LweI	GCATC	4 cut(s)	330, 397, 1116, 1408
MabI	ACCWGGT	1 cut(s)	221
MaeI	CTAG	4 cut(s)	1119, 1341, 1367, 1623
MaeIII	GTNAC	1 cut(s)	1373
MalI	GATC	4 cut(s)	100, 994, 1104, 1291
MboI	GATC	4 cut(s)	98, 992, 1102, 1289
MflI	RGATCY	2 cut(s)	992, 1289
MhlI	GDGCHC	1 cut(s)	662
MlyI	GAGTC	3 cut(s)	142, 490, 857
MmeI	TCCRAC	4 cut(s)	494, 538, 1239, 1546
Mph1103I	ATGCAT	1 cut(s)	1401
MseI	TTAA	7 cut(s)	30, 459, 575, 779, 809, 984, 1077
MslI	CAYNNNNRTG	3 cut(s)	443, 1023, 1404
MspR9I	CCNGG	4 cut(s)	6, 223, 885, 1392
Mva1269I	GAATGC	1 cut(s)	424
MvaI	CCWGG	4 cut(s)	6, 223, 885, 1392
MvnI	CGCG	2 cut(s)	486, 1457
MwoI	GCNNNNNNNGC	3 cut(s)	551, 1396, 1580
NcoI	CCATGG	1 cut(s)	1132
NdeI	CATATG	1 cut(s)	910
NdeII	GATC	4 cut(s)	98, 992, 1102, 1289
NlaIII	CATG	7 cut(s)	40, 166, 397, 694, 902, 974, 1136
NlaIV	GGNNCC	2 cut(s)	10, 93
NmuCI	GTSAC	1 cut(s)	1373
NsiI	ATGCAT	1 cut(s)	1401
NspI	RCATGY	1 cut(s)	166
PctI	GAATGC	1 cut(s)	424
PfeI	GAWTC	5 cut(s)	182, 193, 347, 532, 1145
PflFI	GACNNNGTC	1 cut(s)	223
PflMI	CCANNNNNTGG	1 cut(s)	596
PfoI	TCCNGGA	1 cut(s)	883
PkrI	GCNGC	3 cut(s)	654, 1234, 1585
PleI	GAGTC	3 cut(s)	142, 489, 856
PpsI	GAGTC	3 cut(s)	142, 489, 856
PpuMI	RGGWCCY	1 cut(s)	1036
Psp5II	RGGWCCY	1 cut(s)	1036
Psp6I	CCWGG	4 cut(s)	4, 221, 883, 1390
PspGI	CCWGG	4 cut(s)	4, 221, 883, 1390
PspN4I	GGNNCC	2 cut(s)	10, 93
PspPI	GGNCC	4 cut(s)	40, 92, 225, 1036
PspPPI	RGGWCCY	1 cut(s)	1036
PstI	CTGCAG	1 cut(s)	355
PsuI	RGATCY	2 cut(s)	992, 1289
PsyI	GACNNNGTC	1 cut(s)	223
RsaI	GTAC	3 cut(s)	306, 1054, 1095
RsaNI	GTAC	3 cut(s)	305, 1053, 1094
RseI	CAYNNNNRTG	3 cut(s)	443, 1023, 1404
SaqAI	TTAA	7 cut(s)	30, 459, 575, 779, 809, 984, 1077
SatI	GCNGC	3 cut(s)	653, 1233, 1584
Sau3AI	GATC	4 cut(s)	98, 992, 1102, 1289
Sau96I	GGNCC	4 cut(s)	40, 92, 225, 1036
SchI	GAGTC	3 cut(s)	142, 490, 857
ScrFI	CCNGG	4 cut(s)	6, 223, 885, 1392
SduI	GDGCHC	1 cut(s)	662
SexAI	ACCWGGT	1 cut(s)	221
SfaNI	GCATC	4 cut(s)	330, 397, 1116, 1408
SfcI	CTRYAG	1 cut(s)	351
SinI	GGWCC	3 cut(s)	40, 225, 1036
SmiMI	CAYNNNNRTG	3 cut(s)	443, 1023, 1404
SpeI	ACTAGT	1 cut(s)	1340
SsiI	CCGC	2 cut(s)	486, 1457
SspMI	CTAG	4 cut(s)	1119, 1341, 1367, 1623
StyD4I	CCNGG	4 cut(s)	4, 221, 883, 1390
StyI	CCWWGG	1 cut(s)	1132
TaaI	ACNGT	2 cut(s)	445, 891
TaqI	TCGA	1 cut(s)	645
TatI	WGTACW	2 cut(s)	304, 1052
TfiI	GAWTC	5 cut(s)	182, 193, 347, 532, 1145
Tru1I	TTAA	7 cut(s)	30, 459, 575, 779, 809, 984, 1077
Tru9I	TTAA	7 cut(s)	30, 459, 575, 779, 809, 984, 1077
TscAI	CASTG	7 cut(s)	316, 360, 448, 669, 873, 928, 1048
TseFI	GTSAC	1 cut(s)	1373
TseI	GCWGC	3 cut(s)	652, 1232, 1583
Tsp45I	GTSAC	1 cut(s)	1373
TspDTI	ATGAA	9 cut(s)	25, 42, 367, 371, 420, 573, 770, 1329, 1491
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	7 cut(s)	316, 360, 448, 669, 873, 928, 1048
Tth111I	GACNNNGTC	1 cut(s)	223
Van91I	CCANNNNNTGG	1 cut(s)	596
VpaK11BI	GGWCC	3 cut(s)	40, 225, 1036
XapI	RAATTY	4 cut(s)	32, 111, 871, 1201
XceI	RCATGY	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	1440
XspI	CTAG	4 cut(s)	1119, 1341, 1367, 1623
Zsp2I	ATGCAT	1 cut(s)	1401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.