Rw2G006680

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0006067
Physical Location & Seq
Forward (+)
6459997 .. 6463050
3054 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G006680.1

Sequence Viewer

Length: 1596 bp
ATGCCGGGAACCATCTTGGTTTCAGTTCTTGAATTCATGGACCTTCCATTTTCATCATCATCTTCTTCTTCAATATCGATAAAGGTATCTTTGGGGTCAAGATCAGAGTACCAAATTTGGGAGAGTAGAGACTTGTCCTTCCCATTGACGACTCTTCGGGACAACATGCTTGTTATTCTCCAAGATTCTGAAGGGAATCAGATATCAGAAACAGGTATTGAGACCAGGTCCATAGTTGAAAAGGGTCTTTGGGATGACTTCTTCCCCCTTAAAGGCGGTGGGTTTCTGCATATGAAATTGCAGTTCTTACTCAATGAAGAAGAGCGCAATCAAATCCGTGTGATGCGAGAATCTGCTGTGAAAAAGAAGCATGGGGAGTTCAGTCATAGCGGTCCTATTAGTGTGCAAAGTACTCCTGGTGCCCGGATCAATGTTGCATCATCTTTGAGTCTTCGCAATAGTGATGCAGATAGGAACGAAGAGACTTCATCAGACATCACTGTGCAGCAAAGTGTTAATTTGTCTCCAACTGATTTGAGTCGCAGGGAGTTGGTTGAAAACATCGCTGCCCAACCATTTCATGCTAAGATTCCTGCCAAAGCCATTTGTGCTGATGAACCTGCAAGGTTATTAAGAGGCTCACAACCAGTTGTTGATAACCTTCCTAAGCTTCAGGAAGAAAAGCATTGCAAACTCGAAAAGCAGCAGAGCCTGCTGAAGAAAACTCCTAGCGTAAAGAACATGATAAGTGCCTTTGAAACTGGTTTAGCGGAGGATGAGAAGCCTCCCATCAAACCAGTACCAATGAAAGTTCAATCAAACAAAACTATAACAGGCAATCTTCCAAAAAACCAGGACTTAAAAGAAGACAAGAAAGTCGGTACAGAAAATTCAGAGTCGATATCAAAACGAGCAGTGAATCCTTTACCTCCAGAACAGTTGCAACATGACACGACATGTGGTGAAAGCGGTGAAGAAAATATTTCACTTGGAGCTTTAGGTGGGACTAAATCATCACACGACACAGTTAAAATTTCAGAGAGGGTACTTCATGATCATAGACACCAACCTAGTAAGATGCTCCATGGAAAAAGAGATTCTGGTGGCAGTCCAGTTATAGAGGAGACTCATCAGCTAGAAATCTCTTCCAGAAATTCTCAAATGTCCGACATTCAAGGACTTTCAGCCCAAATATGTACTTCAATAGCAAACTGCGAAGATAGGCACAATCCCTTTCAAAGCTCTAGTGGATGGATATTCCCAGATGATGCAATACAATTTTGTATAACAACTAGTGGTAAAAAGGTGATGGATTTTCTGGGAAGTTGCAGTATGATGAAGCCAAGTATCCATCAAGATAGAAAGAGTTTGTCTTCCTCAAAAACTGAAGAAGACCAGCAGGATAACGTGGATAGCGGTAATAGTAATGAAGTGAACAGAAATGAGAAGAATCACAGACCAAAAGAACTACATAAGGTTCAGAAATCAGAAGAAACAGAGACTTCTGGGGTGGCAGTTGGACAGGCAATAAAAGTTGCAATTATGATTGGATTTGGAACACTTGTTCTTCTCACTAGACAAAGGAAAAATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

531

Amino Acids

58.71

Weight (kDa)

6.28

Isoelectric Point (pI)

58.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 875
Acc36I ACCTGC 1 cut(s) 628
AccB1I GGYRCC 1 cut(s) 419
AciI CCGC 5 cut(s) 276, 390, 770, 969, 1416
AclWI GGATC 1 cut(s) 434
AcsI RAATTY 5 cut(s) 32, 114, 889, 1032, 1153
AcuI CTGAAG 4 cut(s) 210, 656, 737, 1407
AfaI GTAC 6 cut(s) 110, 412, 801, 883, 1047, 1198
AfiI CCNNNNNNNGG 2 cut(s) 118, 272
AflIII ACRYGT 1 cut(s) 956
AgsI TTSAA 9 cut(s) 32, 72, 239, 557, 758, 815, 1175, 1203, 1238
AhlI ACTAGT 1 cut(s) 1292
AjnI CCWGG 3 cut(s) 224, 415, 852
AloI GAACNNNNNNTCC 2 cut(s) 1548, 1580
AluBI AGCT 4 cut(s) 670, 995, 1135, 1242
AluI AGCT 4 cut(s) 670, 995, 1135, 1242
Alw26I GTCTC 6 cut(s) 123, 215, 476, 528, 1118, 1493
AlwI GGATC 1 cut(s) 434
AlwNI CAGNNNCTG 1 cut(s) 712
ApeKI GCWGC 3 cut(s) 505, 566, 703
ApoI RAATTY 5 cut(s) 32, 114, 889, 1032, 1153
AspLEI GCGC 1 cut(s) 327
AspS9I GGNCC 3 cut(s) 40, 228, 392
AsuC2I CCSGG 2 cut(s) 6, 424
AsuHPI GGTGA 3 cut(s) 974, 983, 1318
AvaII GGWCC 3 cut(s) 40, 228, 392
BaeGI GKGCMC 1 cut(s) 424
BanI GGYRCC 1 cut(s) 419
BbsI GAAGAC 4 cut(s) 443, 873, 1365, 1398
BbvI GCAGC 3 cut(s) 517, 553, 715
BccI CCATC 5 cut(s) 20, 797, 1245, 1303, 1359
BciT130I CCWGG 3 cut(s) 226, 417, 854
BciVI GTATCC 1 cut(s) 1358
BclI TGATCA 1 cut(s) 1054
BcnI CCSGG 2 cut(s) 6, 424
BcoDI GTCTC 6 cut(s) 123, 215, 476, 528, 1118, 1493
BcuI ACTAGT 1 cut(s) 1292
BfaI CTAG 6 cut(s) 729, 1071, 1136, 1245, 1293, 1575
BfuAI ACCTGC 1 cut(s) 628
BfuI GTATCC 1 cut(s) 1358
BisI GCNGC 3 cut(s) 506, 567, 704
BlsI GCNGC 3 cut(s) 507, 568, 705
BmcAI AGTACT 1 cut(s) 412
Bme1390I CCNGG 5 cut(s) 6, 226, 417, 424, 854
Bme18I GGWCC 3 cut(s) 40, 228, 392
BmgT120I GGNCC 3 cut(s) 40, 228, 392
BmiI GGNNCC 2 cut(s) 10, 421
BmrFI CCNGG 5 cut(s) 6, 226, 417, 424, 854
BmsI GCATC 5 cut(s) 333, 446, 454, 1068, 1258
BpiI GAAGAC 4 cut(s) 443, 873, 1365, 1398
BpmI CTGGAG 1 cut(s) 915
Bpu10I CCTNAGC 1 cut(s) 666
BpuMI CCSGG 2 cut(s) 6, 424
Bsa29I ATCGAT 1 cut(s) 77
BsaI GGTCTC 1 cut(s) 215
BsaJI CCNNGG 1 cut(s) 1084
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 272
Bse1I ACTGG 4 cut(s) 647, 766, 797, 1112
Bse3DI GCAATG 1 cut(s) 685
BseBI CCWGG 3 cut(s) 226, 417, 854
BseCI ATCGAT 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 1084
BseGI GGATG 3 cut(s) 259, 781, 1256
BseLI CCNNNNNNNGG 2 cut(s) 118, 272
BseMI GCAATG 1 cut(s) 685
BseNI ACTGG 4 cut(s) 647, 766, 797, 1112
BseRI GAGGAG 1 cut(s) 1136
BseSI GKGCMC 1 cut(s) 424
BseXI GCAGC 3 cut(s) 517, 553, 715
BsgI GTGCAG 1 cut(s) 524
BshNI GGYRCC 1 cut(s) 419
BshVI ATCGAT 1 cut(s) 77
BsiSI CCGG 2 cut(s) 5, 424
BslFI GGGAC 2 cut(s) 173, 1018
BslI CCNNNNNNNGG 2 cut(s) 118, 272
BsmAI GTCTC 6 cut(s) 123, 215, 476, 528, 1118, 1493
BsmFI GGGAC 2 cut(s) 173, 1018
Bso31I GGTCTC 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 424
Bsp143I GATC 3 cut(s) 101, 426, 1054
Bsp19I CCATGG 1 cut(s) 1084
BspACI CCGC 5 cut(s) 276, 390, 770, 969, 1416
BspDI ATCGAT 1 cut(s) 77
BspHI TCATGA 1 cut(s) 1051
BspLI GGNNCC 2 cut(s) 10, 421
BspMI ACCTGC 1 cut(s) 628
BspPI GGATC 1 cut(s) 434
BspQI GCTCTTC 1 cut(s) 315
BspT107I GGYRCC 1 cut(s) 419
BspTNI GGTCTC 1 cut(s) 215
BsrDI GCAATG 1 cut(s) 685
BsrI ACTGG 4 cut(s) 647, 766, 797, 1112
BssECI CCNNGG 1 cut(s) 1084
BssMI GATC 3 cut(s) 101, 426, 1054
BssT1I CCWWGG 1 cut(s) 1084
Bst2UI CCWGG 3 cut(s) 226, 417, 854
Bst4CI ACNGT 3 cut(s) 502, 939, 1027
Bst6I CTCTTC 4 cut(s) 159, 315, 474, 1150
BstAPI GCANNNNNTGC 1 cut(s) 712
BstC8I GCNNGC 1 cut(s) 713
BstDEI CTNAG 2 cut(s) 585, 666
BstDSI CCRYGG 1 cut(s) 1084
BstF5I GGATG 3 cut(s) 259, 781, 1256
BstHHI GCGC 1 cut(s) 327
BstKTI GATC 3 cut(s) 104, 429, 1057
BstMAI GTCTC 6 cut(s) 123, 215, 476, 528, 1118, 1493
BstMBI GATC 3 cut(s) 101, 426, 1054
BstMWI GCNNNNNNNGC 2 cut(s) 608, 712
BstNI CCWGG 3 cut(s) 226, 417, 854
BstNSI RCATGY 2 cut(s) 169, 960
BstSCI CCNGG 5 cut(s) 4, 224, 415, 422, 852
BstSLI GKGCMC 1 cut(s) 424
BstV1I GCAGC 3 cut(s) 517, 553, 715
BstV2I GAAGAC 4 cut(s) 443, 873, 1365, 1398
Bsu15I ATCGAT 1 cut(s) 77
BsuI GTATCC 1 cut(s) 1358
BsuTUI ATCGAT 1 cut(s) 77
BtgI CCRYGG 1 cut(s) 1084
BtgZI GCGATG 1 cut(s) 547
BtsCI GGATG 3 cut(s) 259, 781, 1256
BtsI GCAGTG 1 cut(s) 921
BtsIMutI CAGTG 2 cut(s) 498, 921
BveI ACCTGC 1 cut(s) 628
Cac8I GCNNGC 1 cut(s) 713
CaiI CAGNNNCTG 1 cut(s) 712
CciI TCATGA 1 cut(s) 1051
CfoI GCGC 1 cut(s) 327
Cfr13I GGNCC 3 cut(s) 40, 228, 392
ClaI ATCGAT 1 cut(s) 77
CsiI ACCWGGT 1 cut(s) 224
Csp6I GTAC 6 cut(s) 109, 411, 800, 882, 1046, 1197
CviAII CATG 9 cut(s) 37, 166, 371, 581, 742, 947, 957, 1052, 1085
CviQI GTAC 6 cut(s) 109, 411, 800, 882, 1046, 1197
DdeI CTNAG 2 cut(s) 585, 666
DpnI GATC 3 cut(s) 103, 428, 1056
DpnII GATC 3 cut(s) 101, 426, 1054
DrdI GACNNNNNNGTC 1 cut(s) 875
DseDI GACNNNNNNGTC 1 cut(s) 875
Eam1104I CTCTTC 4 cut(s) 159, 315, 474, 1150
EarI CTCTTC 4 cut(s) 159, 315, 474, 1150
Eco130I CCWWGG 1 cut(s) 1084
Eco31I GGTCTC 1 cut(s) 215
Eco32I GATATC 2 cut(s) 204, 903
Eco47I GGWCC 3 cut(s) 40, 228, 392
Eco57I CTGAAG 4 cut(s) 210, 656, 737, 1407
EcoRI GAATTC 1 cut(s) 32
EcoRII CCWGG 3 cut(s) 224, 415, 852
EcoRV GATATC 2 cut(s) 204, 903
EcoT14I CCWWGG 1 cut(s) 1084
ErhI CCWWGG 1 cut(s) 1084
FaeI CATG 9 cut(s) 40, 169, 374, 584, 745, 950, 960, 1055, 1088
FaqI GGGAC 2 cut(s) 173, 1018
FatI CATG 9 cut(s) 36, 165, 370, 580, 741, 946, 956, 1051, 1084
FauNDI CATATG 1 cut(s) 291
FbaI TGATCA 1 cut(s) 1054
Fnu4HI GCNGC 3 cut(s) 506, 567, 704
FokI GGATG 3 cut(s) 266, 788, 1263
Fsp4HI GCNGC 3 cut(s) 506, 567, 704
FspBI CTAG 6 cut(s) 729, 1071, 1136, 1245, 1293, 1575
GlaI GCGC 1 cut(s) 326
GluI GCNGC 3 cut(s) 506, 567, 704
GsuI CTGGAG 1 cut(s) 915
HapII CCGG 2 cut(s) 5, 424
HhaI GCGC 1 cut(s) 327
Hin1II CATG 9 cut(s) 40, 169, 374, 584, 745, 950, 960, 1055, 1088
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HindIII AAGCTT 1 cut(s) 668
HpaII CCGG 2 cut(s) 5, 424
HphI GGTGA 3 cut(s) 974, 983, 1318
Hpy166II GTNNAC 1 cut(s) 1435
Hpy188III TCNNGA 8 cut(s) 29, 99, 158, 674, 932, 1052, 1149, 1355
Hpy8I GTNNAC 1 cut(s) 1435
HpyAV CCTTC 4 cut(s) 53, 148, 185, 671
HpyCH4III ACNGT 3 cut(s) 502, 939, 1027
HpyCH4IV ACGT 1 cut(s) 1407
HpyF10VI GCNNNNNNNGC 2 cut(s) 608, 712
HpyF3I CTNAG 2 cut(s) 585, 666
HpySE526I ACGT 1 cut(s) 1407
Hsp92II CATG 9 cut(s) 40, 169, 374, 584, 745, 950, 960, 1055, 1088
HspAI GCGC 1 cut(s) 325
Ksp22I TGATCA 1 cut(s) 1054
Kzo9I GATC 3 cut(s) 101, 426, 1054
LguI GCTCTTC 1 cut(s) 315
LmnI GCTCC 2 cut(s) 992, 1086
Lsp1109I GCAGC 3 cut(s) 517, 553, 715
LweI GCATC 5 cut(s) 333, 446, 454, 1068, 1258
MabI ACCWGGT 1 cut(s) 224
MaeI CTAG 6 cut(s) 729, 1071, 1136, 1245, 1293, 1575
MaeII ACGT 1 cut(s) 1407
MalI GATC 3 cut(s) 103, 428, 1056
MboI GATC 3 cut(s) 101, 426, 1054
MhlI GDGCHC 1 cut(s) 424
MluCI AATT 9 cut(s) 32, 114, 296, 517, 889, 1032, 1153, 1277, 1539
MlyI GAGTC 5 cut(s) 145, 457, 547, 905, 1120
MmeI TCCRAC 3 cut(s) 551, 1191, 1498
MnlI CCTC 7 cut(s) 629, 766, 795, 939, 1035, 1114, 1387
MseI TTAA 5 cut(s) 270, 516, 632, 860, 1029
MslI CAYNNNNRTG 1 cut(s) 500
MspI CCGG 2 cut(s) 5, 424
MspR9I CCNGG 5 cut(s) 6, 226, 417, 424, 854
MvaI CCWGG 3 cut(s) 226, 417, 854
MwoI GCNNNNNNNGC 2 cut(s) 608, 712
NciI CCSGG 2 cut(s) 6, 424
NcoI CCATGG 1 cut(s) 1084
NdeI CATATG 1 cut(s) 291
NdeII GATC 3 cut(s) 101, 426, 1054
NlaIII CATG 9 cut(s) 40, 169, 374, 584, 745, 950, 960, 1055, 1088
NlaIV GGNNCC 2 cut(s) 10, 421
NspI RCATGY 2 cut(s) 169, 960
PagI TCATGA 1 cut(s) 1051
PciI ACATGT 1 cut(s) 956
PciSI GCTCTTC 1 cut(s) 315
PfeI GAWTC 7 cut(s) 185, 196, 350, 589, 919, 1097, 1450
PflFI GACNNNGTC 1 cut(s) 226
PkrI GCNGC 3 cut(s) 507, 568, 705
PleI GAGTC 5 cut(s) 145, 456, 546, 904, 1120
PpsI GAGTC 5 cut(s) 145, 456, 546, 904, 1120
PscI ACATGT 1 cut(s) 956
Psp6I CCWGG 3 cut(s) 224, 415, 852
PspGI CCWGG 3 cut(s) 224, 415, 852
PspN4I GGNNCC 2 cut(s) 10, 421
PspPI GGNCC 3 cut(s) 40, 228, 392
PstNI CAGNNNCTG 1 cut(s) 712
PsyI GACNNNGTC 1 cut(s) 226
RsaI GTAC 6 cut(s) 110, 412, 801, 883, 1047, 1198
RsaNI GTAC 6 cut(s) 109, 411, 800, 882, 1046, 1197
RseI CAYNNNNRTG 1 cut(s) 500
SapI GCTCTTC 1 cut(s) 315
SaqAI TTAA 5 cut(s) 270, 516, 632, 860, 1029
SatI GCNGC 3 cut(s) 506, 567, 704
Sau3AI GATC 3 cut(s) 101, 426, 1054
Sau96I GGNCC 3 cut(s) 40, 228, 392
ScaI AGTACT 1 cut(s) 412
SchI GAGTC 5 cut(s) 145, 457, 547, 905, 1120
ScrFI CCNGG 5 cut(s) 6, 226, 417, 424, 854
SduI GDGCHC 1 cut(s) 424
SexAI ACCWGGT 1 cut(s) 224
SfaNI GCATC 5 cut(s) 333, 446, 454, 1068, 1258
SinI GGWCC 3 cut(s) 40, 228, 392
SmiMI CAYNNNNRTG 1 cut(s) 500
SpeI ACTAGT 1 cut(s) 1292
Sse9I AATT 9 cut(s) 32, 114, 296, 517, 889, 1032, 1153, 1277, 1539
SsiI CCGC 5 cut(s) 276, 390, 770, 969, 1416
SspI AATATT 1 cut(s) 982
SspMI CTAG 6 cut(s) 729, 1071, 1136, 1245, 1293, 1575
StyD4I CCNGG 5 cut(s) 4, 224, 415, 422, 852
StyI CCWWGG 1 cut(s) 1084
TaaI ACNGT 3 cut(s) 502, 939, 1027
TaiI ACGT 1 cut(s) 1410
TaqI TCGA 3 cut(s) 77, 696, 899
TasI AATT 9 cut(s) 32, 114, 296, 517, 889, 1032, 1153, 1277, 1539
TatI WGTACW 2 cut(s) 410, 1196
TfiI GAWTC 7 cut(s) 185, 196, 350, 589, 919, 1097, 1450
Tru1I TTAA 5 cut(s) 270, 516, 632, 860, 1029
Tru9I TTAA 5 cut(s) 270, 516, 632, 860, 1029
TscAI CASTG 2 cut(s) 505, 921
TseI GCWGC 3 cut(s) 505, 566, 703
TspGWI ACGGA 1 cut(s) 326
TspRI CASTG 2 cut(s) 505, 921
Tth111I GACNNNGTC 1 cut(s) 226
VpaK11BI GGWCC 3 cut(s) 40, 228, 392
XapI RAATTY 5 cut(s) 32, 114, 889, 1032, 1153
XceI RCATGY 2 cut(s) 169, 960
XspI CTAG 6 cut(s) 729, 1071, 1136, 1245, 1293, 1575
ZrmI AGTACT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.