Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006067

Physical Location & Seq

Genomic Coordinates Reverse (-)

16394393 .. 16397731

Gene Structure 3339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1206500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1584 bp

ATGCCAGGAACCATCAAAGTTTCAGTTCTCGAGTTCATAGACCTTCCTTCTTCCTCAATATCCATCAAGGTTTCTATGGGGAAAAGAGAGTGCCAAGCTTGGGACAAGGGAGACTTCACCTTCGTATTGACGTCCCTCCGCGACAATTTGGTTGTTCTTCTTCAAGATTCTGAGGGTAATGAGATATCACACGCAGGCGTTGAAGTTAAGTCGATAGTCGAGAAGGGTATTTGGGATGACTTGTTTCCCCTCAGTGGAGGCGGGTTTGTGCGTATGAAGTTGCAGTTTGTACTCAACGAAGAAGAGCGTAACAGAATCCGAATGATGAGAGAATCTGCACTGAAAAAGAAACAAGGGGAGTTGATCAATAGCAGTCCCAACAGTGTGCAAAGTACTCTGAGTGCTGGGGTGAATGTTGCATCATCCTTCTACCTTCGCGAAGAGATCTCAGCCACTTCTGCGGATAAAACTTCAATAGTATTAAGAGGCTCACAATCGGCTGTTGGCGCAACAAATCATCCTAATCTTCAGGAAGATAGGCCTCGAAACCTCGAGAAGCGGAGTCCGATCAAGAAAACTCCTAGCAGTGTAAAGAAAATGATAAGCGCCTTTGAAAGCGGTTCAGCTGAGGATATGAGGCCTCGAATCAAATCACCACCATTACAAGTTCGATCAAATAAGATTAAAACAGGAGCTCTTGTGGAAAGCCAGAACTTAGAAGAACACAAGAATATGATAAGTACAGAAACTGCACAGTCAATATCAAAAGCGGTAGAGGATCCTTTAGGAGACTTGAATCTTGATTTAACATCTGGTGAAAAAAGCGGGCACCAAATTAGTTTACTTGGAGCTTCGGATGCGATTAAATCTTCACATCCCACTGGGATAAAGAATAAATTCAAACAATTAGATGTGGACCAAGTAGCTGACATAAAGAAAGGTAACTTTCCCAAAGATTTCGTTAGACGATCAGCATTTGAAATGGTTCAAGTATCAGAGAAGATTCTTGGTAAGCATAGGCACGAACCTTCTGATATGCCGTGTGGAAAGCGACATTCTGGGCGCATCAAAGGTATAGAGGAGAGTCGAGTACAAGTTTCTTCGACAAATACTCAAATCACCGACGTTCAAGGAGCTTCATCTAGTGCTAATGTATGTACATCAGAAGCAAACTTGGAAGATAGGCACATTCAAGAAGATTCCGGTCCCAATGTATTATGCACATCAGTAGCAAACTGTGAAGATAGGCACATTCCCTTTGAGAGCTCCGGTGCCTGGATTTTTCCAGATGAAGCGATACGCTTTTGTGTAACAACTACTGGTAAAAAAATGATAGATTTGCGAGGCTGTTGCAGAGAGAATCCAAATATCCATCAACGAGAGACAAATTTTTCACTACCAGAAAATGTTGAAGAGCATAACGTGGATAAAAAAGAGGAGAATCAAAGAAGAAGATCAAAGGTTGAGAATTCATCAGAGGAGGCTGGAACTTTTGGGGGGCCAGTTGGGCAGGCAATAAAAGTTGCAATTATGATTGGCTTTGGCACACTTGTTCTCCTTACAAGACAAAGAAAAAACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

528

Amino Acids

58.08

Weight (kDa)

8.03

Isoelectric Point (pI)

51.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56850 AT5G56850 AT5G56850 AT5G56850 AT5G56850 AT5G56850 AT5G56850 AT5G56850
fragaria_vesca	FvH4_1g07370 FvH4_1g07370 FvH4_1g07370 FvH4_1g07370
malus_domestica	MD02G1078500.v1.1 MD15G1206500.v1.1
prunus_persica	Prupe.7G210300_v2.0.a1
pyrus_communis	pycom02g06280 pycom15g18290
rosa_chinensis	RchiOBHm_Chr2g0093251
rosa_laevigata	RLG00000016383
rosa_multiflora	Rmu_sc0003724.1_g000019
rosa_roxburghii	Rroxscaffold_2G00148340
rosa_rugosa	Rorug02G0033900
rosa_samantha	Rh2AG080200 Rh2BG081200 Rh2CG083600 Rh2DG079100
rosa_wichuraiana	Rw2G006680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	134
AccB1I	GGYRCC	2 cut(s)	828, 1271
AccII	CGCG	2 cut(s)	141, 438
AciI	CCGC	7 cut(s)	139, 261, 461, 559, 618, 770, 825
AclWI	GGATC	2 cut(s)	773, 786
AcsI	RAATTY	3 cut(s)	896, 1387, 1468
AcuI	CTGAAG	1 cut(s)	512
AcyI	GRCGYC	1 cut(s)	131
AfaI	GTAC	5 cut(s)	291, 394, 742, 1092, 1159
AfiI	CCNNNNNNNGG	3 cut(s)	100, 254, 1275
AjnI	CCWGG	2 cut(s)	4, 1274
AluBI	AGCT	7 cut(s)	98, 626, 695, 851, 926, 1136, 1266
AluI	AGCT	7 cut(s)	98, 626, 695, 851, 926, 1136, 1266
Alw21I	GWGCWC	2 cut(s)	697, 1268
Alw26I	GTCTC	3 cut(s)	105, 783, 1376
AlwI	GGATC	2 cut(s)	773, 786
AlwNI	CAGNNNCTG	1 cut(s)	749
Ama87I	CYCGRG	2 cut(s)	29, 551
AoxI	GGCC	3 cut(s)	539, 638, 1499
ApoI	RAATTY	3 cut(s)	896, 1387, 1468
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
Asp700I	GAANNNNTTC	2 cut(s)	896, 984
AspLEI	GCGC	3 cut(s)	509, 608, 1065
AspS9I	GGNCC	3 cut(s)	916, 1205, 1499
AsuHPI	GGTGA	5 cut(s)	109, 421, 645, 827, 1111
AvaI	CYCGRG	2 cut(s)	29, 551
AvaII	GGWCC	2 cut(s)	916, 1205
BaeGI	GKGCMC	1 cut(s)	831
BamHI	GGATCC	1 cut(s)	778
BanI	GGYRCC	2 cut(s)	828, 1271
BanII	GRGCYC	2 cut(s)	697, 1268
Bbv12I	GWGCWC	2 cut(s)	697, 1268
BbvCI	CCTCAGC	1 cut(s)	627
BccI	CCATC	3 cut(s)	20, 71, 1380
BceAI	ACGGC	1 cut(s)	1024
BcgI	CGANNNNNNTGC	2 cut(s)	1332, 1366
BciT130I	CCWGG	2 cut(s)	6, 1276
BclI	TGATCA	1 cut(s)	363
BcoDI	GTCTC	3 cut(s)	105, 783, 1376
BfaI	CTAG	2 cut(s)	582, 1143
BfoI	RGCGCY	1 cut(s)	609
BglI	GCCNNNNNGGC	1 cut(s)	1507
BglII	AGATCT	1 cut(s)	444
BmcAI	AGTACT	1 cut(s)	394
Bme1390I	CCNGG	2 cut(s)	6, 1276
Bme18I	GGWCC	2 cut(s)	916, 1205
BmeT110I	CYCGRG	2 cut(s)	29, 551
BmgT120I	GGNCC	3 cut(s)	916, 1205, 1499
BmiI	GGNNCC	6 cut(s)	10, 780, 830, 1207, 1273, 1500
BmrFI	CCNGG	2 cut(s)	6, 1276
BmrI	ACTGGG	1 cut(s)	891
BmsI	GCATC	3 cut(s)	428, 847, 1074
BmuI	ACTGGG	1 cut(s)	891
Bpu10I	CCTNAGC	1 cut(s)	627
BsaHI	GRCGYC	1 cut(s)	131
BsaWI	WCCGGW	2 cut(s)	1202, 1268
BsaXI	ACNNNNNCTCC	4 cut(s)	684, 714, 1539, 1569
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 254, 1275
Bse1I	ACTGG	3 cut(s)	886, 1324, 1502
BseBI	CCWGG	2 cut(s)	6, 1276
BseGI	GGATG	5 cut(s)	241, 422, 517, 862, 874
BseLI	CCNNNNNNNGG	3 cut(s)	100, 254, 1275
BseMII	CTCAG	5 cut(s)	162, 265, 389, 462, 618
BseNI	ACTGG	3 cut(s)	886, 1324, 1502
BseRI	GAGGAG	3 cut(s)	1094, 1451, 1493
BseSI	GKGCMC	1 cut(s)	831
BseYI	CCCAGC	1 cut(s)	404
BsgI	GTGCAG	2 cut(s)	321, 735
Bsh1236I	CGCG	2 cut(s)	141, 438
BshFI	GGCC	3 cut(s)	541, 640, 1501
BshNI	GGYRCC	2 cut(s)	828, 1271
BsiHKAI	GWGCWC	2 cut(s)	697, 1268
BsiHKCI	CYCGRG	2 cut(s)	29, 551
BsiSI	CCGG	2 cut(s)	1203, 1269
BslFI	GGGAC	4 cut(s)	116, 118, 360, 1191
BslI	CCNNNNNNNGG	3 cut(s)	100, 254, 1275
BsmAI	GTCTC	3 cut(s)	105, 783, 1376
BsmFI	GGGAC	4 cut(s)	116, 118, 360, 1191
BsnI	GGCC	3 cut(s)	541, 640, 1501
BsoBI	CYCGRG	2 cut(s)	29, 551
Bsp1286I	GDGCHC	3 cut(s)	697, 831, 1268
Bsp1407I	TGTACA	1 cut(s)	1157
Bsp143I	GATC	7 cut(s)	363, 444, 567, 671, 778, 968, 1454
Bsp68I	TCGCGA	1 cut(s)	438
BspACI	CCGC	7 cut(s)	139, 261, 461, 559, 618, 770, 825
BspANI	GGCC	3 cut(s)	541, 640, 1501
BspCNI	CTCAG	5 cut(s)	163, 264, 390, 461, 619
BspFNI	CGCG	2 cut(s)	141, 438
BspLI	GGNNCC	6 cut(s)	10, 780, 830, 1207, 1273, 1500
BspPI	GGATC	2 cut(s)	773, 786
BspQI	GCTCTTC	2 cut(s)	297, 1407
BspT107I	GGYRCC	2 cut(s)	828, 1271
BsrGI	TGTACA	1 cut(s)	1157
BsrI	ACTGG	3 cut(s)	886, 1324, 1502
BssMI	GATC	7 cut(s)	363, 444, 567, 671, 778, 968, 1454
BssNI	GRCGYC	1 cut(s)	131
Bst2UI	CCWGG	2 cut(s)	6, 1276
Bst4CI	ACNGT	4 cut(s)	383, 756, 1238, 1580
Bst6I	CTCTTC	3 cut(s)	297, 435, 1407
BstACI	GRCGYC	1 cut(s)	131
BstAUI	TGTACA	1 cut(s)	1157
BstC8I	GCNNGC	3 cut(s)	196, 827, 1512
BstDEI	CTNAG	6 cut(s)	171, 251, 398, 448, 627, 715
BstF5I	GGATG	5 cut(s)	241, 422, 517, 862, 874
BstFNI	CGCG	2 cut(s)	141, 438
BstH2I	RGCGCY	1 cut(s)	609
BstHHI	GCGC	3 cut(s)	509, 608, 1065
BstKTI	GATC	7 cut(s)	366, 447, 570, 674, 781, 971, 1457
BstMAI	GTCTC	3 cut(s)	105, 783, 1376
BstMBI	GATC	7 cut(s)	363, 444, 567, 671, 778, 968, 1454
BstMWI	GCNNNNNNNGC	4 cut(s)	458, 506, 857, 1507
BstNI	CCWGG	2 cut(s)	6, 1276
BstSCI	CCNGG	2 cut(s)	4, 1274
BstSLI	GKGCMC	1 cut(s)	831
BstUI	CGCG	2 cut(s)	141, 438
BstX2I	RGATCY	2 cut(s)	444, 778
BstYI	RGATCY	2 cut(s)	444, 778
BsuRI	GGCC	3 cut(s)	541, 640, 1501
BtsCI	GGATG	5 cut(s)	241, 422, 517, 862, 874
BtsI	GCAGTG	1 cut(s)	592
BtsIMutI	CAGTG	5 cut(s)	259, 338, 388, 592, 879
BtuMI	TCGCGA	1 cut(s)	438
Cac8I	GCNNGC	3 cut(s)	196, 827, 1512
CaiI	CAGNNNCTG	1 cut(s)	749
CfoI	GCGC	3 cut(s)	509, 608, 1065
Cfr13I	GGNCC	3 cut(s)	916, 1205, 1499
Csp6I	GTAC	5 cut(s)	290, 393, 741, 1091, 1158
CviQI	GTAC	5 cut(s)	290, 393, 741, 1091, 1158
DdeI	CTNAG	6 cut(s)	171, 251, 398, 448, 627, 715
DpnI	GATC	7 cut(s)	365, 446, 569, 673, 780, 970, 1456
DpnII	GATC	7 cut(s)	363, 444, 567, 671, 778, 968, 1454
Eam1104I	CTCTTC	3 cut(s)	297, 435, 1407
EarI	CTCTTC	3 cut(s)	297, 435, 1407
Ecl136II	GAGCTC	2 cut(s)	695, 1266
Eco147I	AGGCCT	2 cut(s)	541, 640
Eco24I	GRGCYC	2 cut(s)	697, 1268
Eco32I	GATATC	1 cut(s)	186
Eco47I	GGWCC	2 cut(s)	916, 1205
Eco53kI	GAGCTC	2 cut(s)	695, 1266
Eco57I	CTGAAG	1 cut(s)	512
Eco88I	CYCGRG	2 cut(s)	29, 551
EcoICRI	GAGCTC	2 cut(s)	695, 1266
EcoRI	GAATTC	1 cut(s)	1468
EcoRII	CCWGG	2 cut(s)	4, 1274
EcoRV	GATATC	1 cut(s)	186
EcoT38I	GRGCYC	2 cut(s)	697, 1268
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FaqI	GGGAC	4 cut(s)	116, 118, 360, 1191
FauI	CCCGC	2 cut(s)	254, 818
FbaI	TGATCA	1 cut(s)	363
FokI	GGATG	5 cut(s)	248, 409, 504, 861, 869
FriOI	GRGCYC	2 cut(s)	697, 1268
FspBI	CTAG	2 cut(s)	582, 1143
GlaI	GCGC	3 cut(s)	508, 607, 1064
GsaI	CCCAGC	1 cut(s)	408
HaeII	RGCGCY	1 cut(s)	609
HaeIII	GGCC	3 cut(s)	541, 640, 1501
HapII	CCGG	2 cut(s)	1203, 1269
HhaI	GCGC	3 cut(s)	509, 608, 1065
Hin1I	GRCGYC	1 cut(s)	131
Hin6I	GCGC	3 cut(s)	507, 606, 1063
HinP1I	GCGC	3 cut(s)	507, 606, 1063
HindIII	AAGCTT	1 cut(s)	96
HpaII	CCGG	2 cut(s)	1203, 1269
HphI	GGTGA	5 cut(s)	109, 421, 645, 827, 1111
Hpy166II	GTNNAC	2 cut(s)	842, 916
Hpy188I	TCNGA	9 cut(s)	172, 320, 399, 567, 856, 997, 1033, 1165, 1477
Hpy8I	GTNNAC	2 cut(s)	842, 916
Hpy99I	CGWCG	1 cut(s)	1127
HpyAV	CCTTC	7 cut(s)	53, 57, 130, 217, 436, 443, 1038
HpyCH4III	ACNGT	4 cut(s)	383, 756, 1238, 1580
HpyCH4IV	ACGT	3 cut(s)	131, 1125, 1422
HpyCH4V	TGCA	8 cut(s)	283, 338, 388, 419, 752, 1221, 1353, 1526
HpyF10VI	GCNNNNNNNGC	4 cut(s)	458, 506, 857, 1507
HpyF3I	CTNAG	6 cut(s)	171, 251, 398, 448, 627, 715
HpySE526I	ACGT	3 cut(s)	131, 1125, 1422
Hsp92I	GRCGYC	1 cut(s)	131
HspAI	GCGC	3 cut(s)	507, 606, 1063
Ksp22I	TGATCA	1 cut(s)	363
Kzo9I	GATC	7 cut(s)	363, 444, 567, 671, 778, 968, 1454
LguI	GCTCTTC	2 cut(s)	297, 1407
LmnI	GCTCC	4 cut(s)	692, 848, 1133, 1271
LweI	GCATC	3 cut(s)	428, 847, 1074
MaeI	CTAG	2 cut(s)	582, 1143
MaeII	ACGT	3 cut(s)	131, 1125, 1422
MaeIII	GTNAC	3 cut(s)	308, 941, 1309
MalI	GATC	7 cut(s)	365, 446, 569, 673, 780, 970, 1456
MboI	GATC	7 cut(s)	363, 444, 567, 671, 778, 968, 1454
MflI	RGATCY	2 cut(s)	444, 778
MhlI	GDGCHC	3 cut(s)	697, 831, 1268
MluCI	AATT	7 cut(s)	145, 834, 896, 905, 1387, 1468, 1527
MlyI	GAGTC	2 cut(s)	571, 1093
MroXI	GAANNNNTTC	2 cut(s)	896, 984
MseI	TTAA	6 cut(s)	207, 482, 684, 806, 864, 1582
MspA1I	CMGCKG	1 cut(s)	626
MspI	CCGG	2 cut(s)	1203, 1269
MspR9I	CCNGG	2 cut(s)	6, 1276
MvaI	CCWGG	2 cut(s)	6, 1276
MvnI	CGCG	2 cut(s)	141, 438
MwoI	GCNNNNNNNGC	4 cut(s)	458, 506, 857, 1507
NdeII	GATC	7 cut(s)	363, 444, 567, 671, 778, 968, 1454
NlaIV	GGNNCC	6 cut(s)	10, 780, 830, 1207, 1273, 1500
NruI	TCGCGA	1 cut(s)	438
PaeR7I	CTCGAG	2 cut(s)	29, 551
PceI	AGGCCT	2 cut(s)	541, 640
PciSI	GCTCTTC	2 cut(s)	297, 1407
PdmI	GAANNNNTTC	2 cut(s)	896, 984
PfeI	GAWTC	9 cut(s)	167, 315, 332, 645, 796, 1003, 1199, 1360, 1441
PleI	GAGTC	2 cut(s)	570, 1092
PpsI	GAGTC	2 cut(s)	570, 1092
Psp124BI	GAGCTC	2 cut(s)	697, 1268
Psp6I	CCWGG	2 cut(s)	4, 1274
PspFI	CCCAGC	1 cut(s)	404
PspGI	CCWGG	2 cut(s)	4, 1274
PspN4I	GGNNCC	6 cut(s)	10, 780, 830, 1207, 1273, 1500
PspPI	GGNCC	3 cut(s)	916, 1205, 1499
PstNI	CAGNNNCTG	1 cut(s)	749
PsuI	RGATCY	2 cut(s)	444, 778
PvuII	CAGCTG	1 cut(s)	626
RruI	TCGCGA	1 cut(s)	438
RsaI	GTAC	5 cut(s)	291, 394, 742, 1092, 1159
RsaNI	GTAC	5 cut(s)	290, 393, 741, 1091, 1158
SacI	GAGCTC	2 cut(s)	697, 1268
SapI	GCTCTTC	2 cut(s)	297, 1407
SaqAI	TTAA	6 cut(s)	207, 482, 684, 806, 864, 1582
Sau3AI	GATC	7 cut(s)	363, 444, 567, 671, 778, 968, 1454
Sau96I	GGNCC	3 cut(s)	916, 1205, 1499
ScaI	AGTACT	1 cut(s)	394
SchI	GAGTC	2 cut(s)	571, 1093
ScrFI	CCNGG	2 cut(s)	6, 1276
SduI	GDGCHC	3 cut(s)	697, 831, 1268
SfaNI	GCATC	3 cut(s)	428, 847, 1074
Sfr274I	CTCGAG	2 cut(s)	29, 551
SinI	GGWCC	2 cut(s)	916, 1205
SlaI	CTCGAG	2 cut(s)	29, 551
SmlI	CTYRAG	2 cut(s)	29, 551
SmoI	CTYRAG	2 cut(s)	29, 551
Sse9I	AATT	7 cut(s)	145, 834, 896, 905, 1387, 1468, 1527
SseBI	AGGCCT	2 cut(s)	541, 640
SsiI	CCGC	7 cut(s)	139, 261, 461, 559, 618, 770, 825
SspMI	CTAG	2 cut(s)	582, 1143
SstI	GAGCTC	2 cut(s)	697, 1268
StuI	AGGCCT	2 cut(s)	541, 640
StyD4I	CCNGG	2 cut(s)	4, 1274
TaaI	ACNGT	4 cut(s)	383, 756, 1238, 1580
TaiI	ACGT	3 cut(s)	134, 1128, 1425
TaqI	TCGA	9 cut(s)	30, 212, 219, 544, 552, 643, 670, 1087, 1103
TasI	AATT	7 cut(s)	145, 834, 896, 905, 1387, 1468, 1527
TatI	WGTACW	5 cut(s)	289, 392, 740, 1090, 1157
TfiI	GAWTC	9 cut(s)	167, 315, 332, 645, 796, 1003, 1199, 1360, 1441
Tru1I	TTAA	6 cut(s)	207, 482, 684, 806, 864, 1582
Tru9I	TTAA	6 cut(s)	207, 482, 684, 806, 864, 1582
TscAI	CASTG	5 cut(s)	259, 345, 388, 592, 886
TspDTI	ATGAA	5 cut(s)	25, 290, 1128, 1305, 1461
TspRI	CASTG	5 cut(s)	259, 345, 388, 592, 886
VpaK11BI	GGWCC	2 cut(s)	916, 1205
XapI	RAATTY	3 cut(s)	896, 1387, 1468
XhoI	CTCGAG	2 cut(s)	29, 551
XmnI	GAANNNNTTC	2 cut(s)	896, 984
XspI	CTAG	2 cut(s)	582, 1143
ZraI	GACGTC	1 cut(s)	132
ZrmI	AGTACT	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.