Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003724.1

Orthogroup ID

OG0006067

Physical Location & Seq

Genomic Coordinates Reverse (-)

94249 .. 97295

Gene Structure 3047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003724.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1593 bp

atgccgggaaccatcttggtttcagttcttgaattcatggaccttccattttcatcatcatcttcttcaatatcgataaaggtatctttggggtcaagatcagagtaccaaatttgggagagtcgagacttgtccttcccattgacgactcttcgggacaacatgcttgttattctccaagattctgaagggaatcagatatcagaaacaggtattgagaccaggtccatagttgaaaagggtctttgggatgacttcttcccccttaaaggcggtgggtttctgcatatgaaattgcagttcttactcaatgaagaagagcgcaatcaaatccgtgtgatgcgagaatctgctgtgaaaaagaagcatggggagttcattcatagcagtcctattagtgtgcaaagtactcctggtgcccggatcaatgttgcatcatctttgagtcttcgcaatgtgatatcagataggaatgaagagacttcatcagacatcactgtgcagcgaagtgttaatttgtctccaactgatttgagtcgcagggagttggttgaaaacatcgctgcccaaccatttcatgctaagattcctgccaaagccatttgtgctgatgaacctgcaaggttattaagaggctcacaaccagttgttgataaccttcctaagcttcaggaagaaaagcattgcaaactcgaaaagcagcagagcctgctgaagaaaactcctagcgtaaagaacatgataagtgcctttgaaactggtttagcggaggatgagaagcctcccatcaaaccagtaccaatgaaagttcaatcaaacaaaactataacaggcaatcttccaaaaaaccaggacttaaaagaagacaagaaagtcggtacagaaaattcagagtcgatatcaaaacgagcagtgaatcctttacctccagaacagttgcaacatgacacgacatgtggtgaaagcggtgaagaaaatatttcacttggagctttaggtgggactaaatcatcacacgacacagttcaaatttcagagagggtacttcatgatcatagacaccaacctagtaagatgctccatggaaaaagagattctggtggcagtccagttatagaggagactcatcagctagaaatctcttccagaaattctcaaatgtccgacattcaaggacttgcagcccaaatatgtacttcaatagcagactgcgaagataggcacaatccctttcaaagctctagtggatggatattcccagatgatgcaatacaattttgtataacaactagtggtaaaaaggtgatggattttctgggaagttgcagtatgatgaagccaagtatccatcaagatagaaagagtttgtcttcctcaaaaactgcagaagaccagcaggataacatggatagcggtaatagtaatgaagtgaacagaaatgagaagaatcacagaccaaaagaactacataaggttcagaaatcagaagaaacagagacttctggggtggcagttggacaggcaataaaagttgcaattatgattggatttggaacacttgttcttctcactagacaaaggaaaaatatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

530

Amino Acids

58.69

Weight (kDa)

6.38

Isoelectric Point (pI)

58.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56850 AT5G56850 AT5G56850 AT5G56850 AT5G56850 AT5G56850 AT5G56850 AT5G56850
fragaria_vesca	FvH4_1g07370 FvH4_1g07370 FvH4_1g07370 FvH4_1g07370
malus_domestica	MD02G1078500.v1.1 MD15G1206500.v1.1
prunus_persica	Prupe.7G210300_v2.0.a1
pyrus_communis	pycom02g06280 pycom15g18290
rosa_chinensis	RchiOBHm_Chr2g0093251
rosa_laevigata	RLG00000016383
rosa_multiflora	Rmu_sc0003724.1_g000019
rosa_roxburghii	Rroxscaffold_2G00148340
rosa_rugosa	Rorug02G0033900
rosa_samantha	Rh2AG080200 Rh2BG081200 Rh2CG083600 Rh2DG079100
rosa_wichuraiana	Rw2G006680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	872
Acc36I	ACCTGC	1 cut(s)	625
AccB1I	GGYRCC	1 cut(s)	416
AciI	CCGC	4 cut(s)	273, 767, 966, 1413
AclWI	GGATC	1 cut(s)	431
AcsI	RAATTY	5 cut(s)	32, 111, 886, 1029, 1150
AcuI	CTGAAG	3 cut(s)	207, 653, 734
AfaI	GTAC	6 cut(s)	107, 409, 798, 880, 1044, 1195
AfiI	CCNNNNNNNGG	2 cut(s)	115, 269
AflIII	ACRYGT	1 cut(s)	953
AhlI	ACTAGT	1 cut(s)	1289
AjnI	CCWGG	3 cut(s)	221, 412, 849
AloI	GAACNNNNNNTCC	2 cut(s)	1545, 1577
AluBI	AGCT	4 cut(s)	667, 992, 1132, 1239
AluI	AGCT	4 cut(s)	667, 992, 1132, 1239
Alw26I	GTCTC	6 cut(s)	120, 212, 473, 525, 1115, 1490
AlwI	GGATC	1 cut(s)	431
AlwNI	CAGNNNCTG	1 cut(s)	709
ApeKI	GCWGC	4 cut(s)	502, 563, 700, 1181
ApoI	RAATTY	5 cut(s)	32, 111, 886, 1029, 1150
AspLEI	GCGC	1 cut(s)	324
AspS9I	GGNCC	2 cut(s)	40, 225
AsuC2I	CCSGG	2 cut(s)	6, 421
AsuHPI	GGTGA	3 cut(s)	971, 980, 1315
AvaII	GGWCC	2 cut(s)	40, 225
BaeGI	GKGCMC	1 cut(s)	421
BanI	GGYRCC	1 cut(s)	416
BbsI	GAAGAC	4 cut(s)	440, 870, 1362, 1395
BbvI	GCAGC	4 cut(s)	514, 550, 712, 1193
BccI	CCATC	5 cut(s)	20, 794, 1242, 1300, 1356
BciT130I	CCWGG	3 cut(s)	223, 414, 851
BciVI	GTATCC	1 cut(s)	1355
BclI	TGATCA	1 cut(s)	1051
BcnI	CCSGG	2 cut(s)	6, 421
BcoDI	GTCTC	6 cut(s)	120, 212, 473, 525, 1115, 1490
BcuI	ACTAGT	1 cut(s)	1289
BfaI	CTAG	6 cut(s)	726, 1068, 1133, 1242, 1290, 1572
BfmI	CTRYAG	1 cut(s)	1383
BfuAI	ACCTGC	1 cut(s)	625
BfuI	GTATCC	1 cut(s)	1355
BisI	GCNGC	4 cut(s)	503, 564, 701, 1182
BlsI	GCNGC	4 cut(s)	504, 565, 702, 1183
BmcAI	AGTACT	1 cut(s)	409
Bme1390I	CCNGG	5 cut(s)	6, 223, 414, 421, 851
Bme18I	GGWCC	2 cut(s)	40, 225
BmgT120I	GGNCC	2 cut(s)	40, 225
BmiI	GGNNCC	2 cut(s)	10, 418
BmrFI	CCNGG	5 cut(s)	6, 223, 414, 421, 851
BmsI	GCATC	4 cut(s)	330, 443, 1065, 1255
BpiI	GAAGAC	4 cut(s)	440, 870, 1362, 1395
BpmI	CTGGAG	1 cut(s)	912
Bpu10I	CCTNAGC	1 cut(s)	663
BpuMI	CCSGG	2 cut(s)	6, 421
Bsa29I	ATCGAT	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	1081
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 269
Bse1I	ACTGG	4 cut(s)	644, 763, 794, 1109
Bse3DI	GCAATG	2 cut(s)	460, 682
BseBI	CCWGG	3 cut(s)	223, 414, 851
BseCI	ATCGAT	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	1081
BseGI	GGATG	3 cut(s)	256, 778, 1253
BseLI	CCNNNNNNNGG	2 cut(s)	115, 269
BseMI	GCAATG	2 cut(s)	460, 682
BseNI	ACTGG	4 cut(s)	644, 763, 794, 1109
BseRI	GAGGAG	1 cut(s)	1133
BseSI	GKGCMC	1 cut(s)	421
BseXI	GCAGC	4 cut(s)	514, 550, 712, 1193
BsgI	GTGCAG	1 cut(s)	521
BshNI	GGYRCC	1 cut(s)	416
BshVI	ATCGAT	1 cut(s)	74
BsiSI	CCGG	2 cut(s)	5, 421
BslFI	GGGAC	2 cut(s)	170, 1015
BslI	CCNNNNNNNGG	2 cut(s)	115, 269
BsmAI	GTCTC	6 cut(s)	120, 212, 473, 525, 1115, 1490
BsmFI	GGGAC	2 cut(s)	170, 1015
Bso31I	GGTCTC	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	3 cut(s)	98, 423, 1051
Bsp19I	CCATGG	1 cut(s)	1081
BspACI	CCGC	4 cut(s)	273, 767, 966, 1413
BspDI	ATCGAT	1 cut(s)	74
BspHI	TCATGA	1 cut(s)	1048
BspLI	GGNNCC	2 cut(s)	10, 418
BspMAI	CTGCAG	1 cut(s)	1387
BspMI	ACCTGC	1 cut(s)	625
BspPI	GGATC	1 cut(s)	431
BspQI	GCTCTTC	1 cut(s)	312
BspT107I	GGYRCC	1 cut(s)	416
BspTNI	GGTCTC	1 cut(s)	212
BsrDI	GCAATG	2 cut(s)	460, 682
BsrI	ACTGG	4 cut(s)	644, 763, 794, 1109
BssECI	CCNNGG	1 cut(s)	1081
BssMI	GATC	3 cut(s)	98, 423, 1051
BssT1I	CCWWGG	1 cut(s)	1081
Bst2UI	CCWGG	3 cut(s)	223, 414, 851
Bst4CI	ACNGT	3 cut(s)	499, 936, 1024
Bst6I	CTCTTC	4 cut(s)	156, 312, 471, 1147
BstAPI	GCANNNNNTGC	1 cut(s)	709
BstC8I	GCNNGC	1 cut(s)	710
BstDEI	CTNAG	2 cut(s)	582, 663
BstDSI	CCRYGG	1 cut(s)	1081
BstF5I	GGATG	3 cut(s)	256, 778, 1253
BstHHI	GCGC	1 cut(s)	324
BstKTI	GATC	3 cut(s)	101, 426, 1054
BstMAI	GTCTC	6 cut(s)	120, 212, 473, 525, 1115, 1490
BstMBI	GATC	3 cut(s)	98, 423, 1051
BstMWI	GCNNNNNNNGC	2 cut(s)	605, 709
BstNI	CCWGG	3 cut(s)	223, 414, 851
BstNSI	RCATGY	2 cut(s)	166, 957
BstSCI	CCNGG	5 cut(s)	4, 221, 412, 419, 849
BstSFI	CTRYAG	1 cut(s)	1383
BstSLI	GKGCMC	1 cut(s)	421
BstV1I	GCAGC	4 cut(s)	514, 550, 712, 1193
BstV2I	GAAGAC	4 cut(s)	440, 870, 1362, 1395
Bsu15I	ATCGAT	1 cut(s)	74
BsuI	GTATCC	1 cut(s)	1355
BsuTUI	ATCGAT	1 cut(s)	74
BtgI	CCRYGG	1 cut(s)	1081
BtgZI	GCGATG	1 cut(s)	544
BtsCI	GGATG	3 cut(s)	256, 778, 1253
BtsI	GCAGTG	1 cut(s)	918
BtsIMutI	CAGTG	2 cut(s)	495, 918
BveI	ACCTGC	1 cut(s)	625
Cac8I	GCNNGC	1 cut(s)	710
CaiI	CAGNNNCTG	1 cut(s)	709
CciI	TCATGA	1 cut(s)	1048
CfoI	GCGC	1 cut(s)	324
Cfr13I	GGNCC	2 cut(s)	40, 225
ClaI	ATCGAT	1 cut(s)	74
CsiI	ACCWGGT	1 cut(s)	221
Csp6I	GTAC	6 cut(s)	106, 408, 797, 879, 1043, 1194
CviQI	GTAC	6 cut(s)	106, 408, 797, 879, 1043, 1194
DdeI	CTNAG	2 cut(s)	582, 663
DpnI	GATC	3 cut(s)	100, 425, 1053
DpnII	GATC	3 cut(s)	98, 423, 1051
DrdI	GACNNNNNNGTC	1 cut(s)	872
DseDI	GACNNNNNNGTC	1 cut(s)	872
Eam1104I	CTCTTC	4 cut(s)	156, 312, 471, 1147
EarI	CTCTTC	4 cut(s)	156, 312, 471, 1147
Eco130I	CCWWGG	1 cut(s)	1081
Eco31I	GGTCTC	1 cut(s)	212
Eco32I	GATATC	3 cut(s)	201, 462, 900
Eco47I	GGWCC	2 cut(s)	40, 225
Eco57I	CTGAAG	3 cut(s)	207, 653, 734
EcoRI	GAATTC	1 cut(s)	32
EcoRII	CCWGG	3 cut(s)	221, 412, 849
EcoRV	GATATC	3 cut(s)	201, 462, 900
EcoT14I	CCWWGG	1 cut(s)	1081
ErhI	CCWWGG	1 cut(s)	1081
FaqI	GGGAC	2 cut(s)	170, 1015
FauNDI	CATATG	1 cut(s)	288
FbaI	TGATCA	1 cut(s)	1051
Fnu4HI	GCNGC	4 cut(s)	503, 564, 701, 1182
FokI	GGATG	3 cut(s)	263, 785, 1260
Fsp4HI	GCNGC	4 cut(s)	503, 564, 701, 1182
FspBI	CTAG	6 cut(s)	726, 1068, 1133, 1242, 1290, 1572
GlaI	GCGC	1 cut(s)	323
GluI	GCNGC	4 cut(s)	503, 564, 701, 1182
GsuI	CTGGAG	1 cut(s)	912
HapII	CCGG	2 cut(s)	5, 421
HhaI	GCGC	1 cut(s)	324
Hin6I	GCGC	1 cut(s)	322
HinP1I	GCGC	1 cut(s)	322
HindIII	AAGCTT	1 cut(s)	665
HpaII	CCGG	2 cut(s)	5, 421
HphI	GGTGA	3 cut(s)	971, 980, 1315
Hpy166II	GTNNAC	1 cut(s)	1432
Hpy188III	TCNNGA	9 cut(s)	29, 96, 125, 155, 671, 929, 1049, 1146, 1352
Hpy8I	GTNNAC	1 cut(s)	1432
HpyAV	CCTTC	4 cut(s)	53, 145, 182, 668
HpyCH4III	ACNGT	3 cut(s)	499, 936, 1024
HpyF10VI	GCNNNNNNNGC	2 cut(s)	605, 709
HpyF3I	CTNAG	2 cut(s)	582, 663
HspAI	GCGC	1 cut(s)	322
Ksp22I	TGATCA	1 cut(s)	1051
Kzo9I	GATC	3 cut(s)	98, 423, 1051
LguI	GCTCTTC	1 cut(s)	312
LmnI	GCTCC	2 cut(s)	989, 1083
Lsp1109I	GCAGC	4 cut(s)	514, 550, 712, 1193
LweI	GCATC	4 cut(s)	330, 443, 1065, 1255
MabI	ACCWGGT	1 cut(s)	221
MaeI	CTAG	6 cut(s)	726, 1068, 1133, 1242, 1290, 1572
MalI	GATC	3 cut(s)	100, 425, 1053
MboI	GATC	3 cut(s)	98, 423, 1051
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	9 cut(s)	32, 111, 293, 514, 886, 1029, 1150, 1274, 1536
MlyI	GAGTC	6 cut(s)	130, 142, 454, 544, 902, 1117
MmeI	TCCRAC	3 cut(s)	548, 1188, 1495
MnlI	CCTC	7 cut(s)	626, 763, 792, 936, 1032, 1111, 1384
MseI	TTAA	4 cut(s)	267, 513, 629, 857
MslI	CAYNNNNRTG	1 cut(s)	497
MspI	CCGG	2 cut(s)	5, 421
MspR9I	CCNGG	5 cut(s)	6, 223, 414, 421, 851
MvaI	CCWGG	3 cut(s)	223, 414, 851
MwoI	GCNNNNNNNGC	2 cut(s)	605, 709
NciI	CCSGG	2 cut(s)	6, 421
NcoI	CCATGG	1 cut(s)	1081
NdeI	CATATG	1 cut(s)	288
NdeII	GATC	3 cut(s)	98, 423, 1051
NlaIV	GGNNCC	2 cut(s)	10, 418
NspI	RCATGY	2 cut(s)	166, 957
PagI	TCATGA	1 cut(s)	1048
PciI	ACATGT	1 cut(s)	953
PciSI	GCTCTTC	1 cut(s)	312
PfeI	GAWTC	7 cut(s)	182, 193, 347, 586, 916, 1094, 1447
PflFI	GACNNNGTC	1 cut(s)	223
PkrI	GCNGC	4 cut(s)	504, 565, 702, 1183
PleI	GAGTC	6 cut(s)	129, 142, 453, 543, 901, 1117
PpsI	GAGTC	6 cut(s)	129, 142, 453, 543, 901, 1117
PscI	ACATGT	1 cut(s)	953
Psp6I	CCWGG	3 cut(s)	221, 412, 849
PspGI	CCWGG	3 cut(s)	221, 412, 849
PspN4I	GGNNCC	2 cut(s)	10, 418
PspPI	GGNCC	2 cut(s)	40, 225
PstI	CTGCAG	1 cut(s)	1387
PstNI	CAGNNNCTG	1 cut(s)	709
PsyI	GACNNNGTC	1 cut(s)	223
RsaI	GTAC	6 cut(s)	107, 409, 798, 880, 1044, 1195
RsaNI	GTAC	6 cut(s)	106, 408, 797, 879, 1043, 1194
RseI	CAYNNNNRTG	1 cut(s)	497
SapI	GCTCTTC	1 cut(s)	312
SaqAI	TTAA	4 cut(s)	267, 513, 629, 857
SatI	GCNGC	4 cut(s)	503, 564, 701, 1182
Sau3AI	GATC	3 cut(s)	98, 423, 1051
Sau96I	GGNCC	2 cut(s)	40, 225
ScaI	AGTACT	1 cut(s)	409
SchI	GAGTC	6 cut(s)	130, 142, 454, 544, 902, 1117
ScrFI	CCNGG	5 cut(s)	6, 223, 414, 421, 851
SduI	GDGCHC	1 cut(s)	421
SexAI	ACCWGGT	1 cut(s)	221
SfaNI	GCATC	4 cut(s)	330, 443, 1065, 1255
SfcI	CTRYAG	1 cut(s)	1383
SinI	GGWCC	2 cut(s)	40, 225
SmiMI	CAYNNNNRTG	1 cut(s)	497
SpeI	ACTAGT	1 cut(s)	1289
Sse9I	AATT	9 cut(s)	32, 111, 293, 514, 886, 1029, 1150, 1274, 1536
SsiI	CCGC	4 cut(s)	273, 767, 966, 1413
SspI	AATATT	1 cut(s)	979
SspMI	CTAG	6 cut(s)	726, 1068, 1133, 1242, 1290, 1572
StyD4I	CCNGG	5 cut(s)	4, 221, 412, 419, 849
StyI	CCWWGG	1 cut(s)	1081
TaaI	ACNGT	3 cut(s)	499, 936, 1024
TaqI	TCGA	4 cut(s)	74, 124, 693, 896
TasI	AATT	9 cut(s)	32, 111, 293, 514, 886, 1029, 1150, 1274, 1536
TatI	WGTACW	2 cut(s)	407, 1193
TfiI	GAWTC	7 cut(s)	182, 193, 347, 586, 916, 1094, 1447
Tru1I	TTAA	4 cut(s)	267, 513, 629, 857
Tru9I	TTAA	4 cut(s)	267, 513, 629, 857
TscAI	CASTG	2 cut(s)	502, 918
TseI	GCWGC	4 cut(s)	502, 563, 700, 1181
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	2 cut(s)	502, 918
Tth111I	GACNNNGTC	1 cut(s)	223
VpaK11BI	GGWCC	2 cut(s)	40, 225
XapI	RAATTY	5 cut(s)	32, 111, 886, 1029, 1150
XceI	RCATGY	2 cut(s)	166, 957
XspI	CTAG	6 cut(s)	726, 1068, 1133, 1242, 1290, 1572
ZrmI	AGTACT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.