Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0006067

Physical Location & Seq

Genomic Coordinates Reverse (-)

6203494 .. 6206653

Gene Structure 3160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1078500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGATAAGCGCCTTTGAAAGCGGCTCAGCTGAGGATATGAGGCCTCAAATCAAACCGCCACCAATACAAATTCGTTCGAATAAGATTAAAACAGGAGCTCTTTTGGAAAGCCATAACTTAGAAGAACACAAGAATGTGACAAGTACAGAAACTGCACAATCAATATCAAAAGCGGTAGTGAATCCTTTTCGGTCAGGGGACTTGAATATTGGTCCAACATCTGGTGAAAAAAGCGGTGAACAAATTAGTTTACCTGGAGCTTTGGATGCGATTAAATATTCACATCCCGCTGGGATAAAGAATACATTCAAATTAGATATACACCAAGTAGTTGACAGAAAGAAAGGTAACTTTCCCAATGATTTCGTTAGACCATCAACATTTGAAACGGTACAAGAATCAGATAAGGTTCTTGGTAAGCATAGGCACGAGCCTTGTGATATGCCCCGTGGAAAGCGACATTCTGGTGGCATTCACGGTATAGAGGAGAGTCGAGTACAAGTTTCTTCGAGAAACTCTCAAATCACCGACGTTCAAGGAGCTTCACCTAGTGCTAATGCATGTACATCAGAAGCAAACTTGGAAGATAGGCACATTCGAGGAGATTCAGGTCCCAATGTATGCACATCAGCAGCAAAATGTGAAGATAGGCACGATCCCTTTGAGAGATCTGGTGACTGGATATTTCCAGATGAAGCAATACGCTTTTGTATAACAACTACTGGTACAAATATGATGGATTCACGAGGTGGTTGCAGAGAGAATCCAAGTATCCATCAACAAAAGATGATTTTTTCACTACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

269

Amino Acids

29.4

Weight (kDa)

6.6

Isoelectric Point (pI)

53.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56850 AT5G56850 AT5G56850 AT5G56850 AT5G56850 AT5G56850 AT5G56850 AT5G56850
fragaria_vesca	FvH4_1g07370 FvH4_1g07370 FvH4_1g07370 FvH4_1g07370
malus_domestica	MD02G1078500.v1.1 MD15G1206500.v1.1
prunus_persica	Prupe.7G210300_v2.0.a1
pyrus_communis	pycom02g06280 pycom15g18290
rosa_chinensis	RchiOBHm_Chr2g0093251
rosa_laevigata	RLG00000016383
rosa_multiflora	Rmu_sc0003724.1_g000019
rosa_roxburghii	Rroxscaffold_2G00148340
rosa_rugosa	Rorug02G0033900
rosa_samantha	Rh2AG080200 Rh2BG081200 Rh2CG083600 Rh2DG079100
rosa_wichuraiana	Rw2G006680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	221
AciI	CCGC	5 cut(s)	21, 56, 173, 234, 288
AclWI	GGATC	1 cut(s)	650
AcsI	RAATTY	1 cut(s)	69
AdeI	CACNNNGTG	2 cut(s)	551, 749
AfaI	GTAC	5 cut(s)	145, 393, 498, 565, 727
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	5 cut(s)	17, 205, 310, 386, 536
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	4 cut(s)	29, 98, 260, 542
AluI	AGCT	4 cut(s)	29, 98, 260, 542
Alw21I	GWGCWC	1 cut(s)	100
AlwI	GGATC	1 cut(s)	650
AlwNI	CAGNNNCTG	1 cut(s)	152
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	1 cut(s)	632
ApoI	RAATTY	1 cut(s)	69
Asp700I	GAANNNNTTC	1 cut(s)	305
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	2 cut(s)	212, 611
AsuHPI	GGTGA	5 cut(s)	236, 248, 517, 537, 686
AsuII	TTCGAA	1 cut(s)	77
AvaII	GGWCC	2 cut(s)	212, 611
BanII	GRGCYC	1 cut(s)	100
BauI	CACGAG	2 cut(s)	428, 744
Bbv12I	GWGCWC	1 cut(s)	100
BbvCI	CCTCAGC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	644
BccI	CCATC	3 cut(s)	382, 730, 783
BcgI	CGANNNNNNTGC	2 cut(s)	735, 769
BciT130I	CCWGG	1 cut(s)	255
BciVI	GTATCC	1 cut(s)	782
BfaI	CTAG	1 cut(s)	549
BfoI	RGCGCY	1 cut(s)	12
BfuI	GTATCC	1 cut(s)	782
BglII	AGATCT	1 cut(s)	668
BisI	GCNGC	2 cut(s)	22, 633
BlpI	GCTNAGC	1 cut(s)	25
BlsI	GCNGC	2 cut(s)	23, 634
Bme1390I	CCNGG	1 cut(s)	255
Bme18I	GGWCC	2 cut(s)	212, 611
BmgT120I	GGNCC	2 cut(s)	212, 611
BmiI	GGNNCC	1 cut(s)	613
BmrFI	CCNGG	1 cut(s)	255
BmsI	GCATC	1 cut(s)	256
BplI	GAGNNNNNCTC	2 cut(s)	502, 534
BpmI	CTGGAG	1 cut(s)	276
Bpu10I	CCTNAGC	1 cut(s)	30
Bpu1102I	GCTNAGC	1 cut(s)	25
Bpu14I	TTCGAA	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	2 cut(s)	683, 727
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	448
BseGI	GGATG	2 cut(s)	271, 283
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMII	CTCAG	2 cut(s)	21, 39
BseNI	ACTGG	2 cut(s)	683, 727
BseRI	GAGGAG	2 cut(s)	500, 615
BseXI	GCAGC	1 cut(s)	644
BseYI	CCCAGC	1 cut(s)	290
BsgI	GTGCAG	1 cut(s)	138
BshFI	GGCC	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	100
BslFI	GGGAC	2 cut(s)	212, 597
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmFI	GGGAC	2 cut(s)	212, 597
BsmI	GAATGC	1 cut(s)	471
BsnI	GGCC	1 cut(s)	43
Bsp119I	TTCGAA	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp1407I	TGTACA	1 cut(s)	563
Bsp143I	GATC	2 cut(s)	655, 668
Bsp1720I	GCTNAGC	1 cut(s)	25
BspACI	CCGC	5 cut(s)	21, 56, 173, 234, 288
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	2 cut(s)	22, 38
BspLI	GGNNCC	1 cut(s)	613
BspPI	GGATC	1 cut(s)	650
BspT104I	TTCGAA	1 cut(s)	77
BsrGI	TGTACA	1 cut(s)	563
BsrI	ACTGG	2 cut(s)	683, 727
BssECI	CCNNGG	1 cut(s)	448
BssMI	GATC	2 cut(s)	655, 668
BssSI	CACGAG	2 cut(s)	428, 744
Bst2BI	CACGAG	2 cut(s)	428, 744
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	2 cut(s)	391, 479
BstAUI	TGTACA	1 cut(s)	563
BstBI	TTCGAA	1 cut(s)	77
BstDEI	CTNAG	3 cut(s)	25, 30, 118
BstDSI	CCRYGG	1 cut(s)	448
BstF5I	GGATG	2 cut(s)	271, 283
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	2 cut(s)	658, 671
BstMBI	GATC	2 cut(s)	655, 668
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstNI	CCWGG	1 cut(s)	255
BstNSI	RCATGY	1 cut(s)	564
BstSCI	CCNGG	1 cut(s)	253
BstV1I	GCAGC	1 cut(s)	644
BstX2I	RGATCY	1 cut(s)	668
BstYI	RGATCY	1 cut(s)	668
BsuI	GTATCC	1 cut(s)	782
BsuRI	GGCC	1 cut(s)	43
BtgI	CCRYGG	1 cut(s)	448
BtsCI	GGATG	2 cut(s)	271, 283
CaiI	CAGNNNCTG	1 cut(s)	152
CfoI	GCGC	1 cut(s)	11
Cfr13I	GGNCC	2 cut(s)	212, 611
Csp6I	GTAC	5 cut(s)	144, 392, 497, 564, 726
CviAII	CATG	1 cut(s)	561
CviJI	RGCY	8 cut(s)	24, 29, 43, 98, 111, 260, 433, 542
CviKI_1	RGCY	8 cut(s)	24, 29, 43, 98, 111, 260, 433, 542
CviQI	GTAC	5 cut(s)	144, 392, 497, 564, 726
DdeI	CTNAG	3 cut(s)	25, 30, 118
DpnI	GATC	2 cut(s)	657, 670
DpnII	GATC	2 cut(s)	655, 668
DraIII	CACNNNGTG	2 cut(s)	551, 749
Ecl136II	GAGCTC	1 cut(s)	98
Eco147I	AGGCCT	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	100
Eco47I	GGWCC	2 cut(s)	212, 611
Eco53kI	GAGCTC	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	611
EcoRII	CCWGG	1 cut(s)	253
EcoT22I	ATGCAT	1 cut(s)	562
EcoT38I	GRGCYC	1 cut(s)	100
FaeI	CATG	1 cut(s)	564
FaqI	GGGAC	2 cut(s)	212, 597
FatI	CATG	1 cut(s)	560
FauI	CCCGC	1 cut(s)	295
Fnu4HI	GCNGC	2 cut(s)	22, 633
FokI	GGATG	2 cut(s)	270, 278
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	2 cut(s)	22, 633
FspBI	CTAG	1 cut(s)	549
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	2 cut(s)	22, 633
GsaI	CCCAGC	1 cut(s)	294
GsuI	CTGGAG	1 cut(s)	276
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	43
HhaI	GCGC	1 cut(s)	11
Hin1II	CATG	1 cut(s)	564
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	6 cut(s)	181, 398, 490, 605, 740, 763
HphI	GGTGA	5 cut(s)	236, 248, 517, 537, 686
Hpy166II	GTNNAC	3 cut(s)	239, 251, 334
Hpy188I	TCNGA	2 cut(s)	403, 571
Hpy188III	TCNNGA	3 cut(s)	510, 689, 744
Hpy8I	GTNNAC	3 cut(s)	239, 251, 334
Hpy99I	CGWCG	1 cut(s)	533
HpyCH4III	ACNGT	2 cut(s)	391, 479
HpyCH4IV	ACGT	1 cut(s)	531
HpyCH4V	TGCA	4 cut(s)	155, 560, 624, 756
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	3 cut(s)	25, 30, 118
HpySE526I	ACGT	1 cut(s)	531
Hsp92II	CATG	1 cut(s)	564
HspAI	GCGC	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	655, 668
LmnI	GCTCC	3 cut(s)	95, 257, 539
Lsp1109I	GCAGC	1 cut(s)	644
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	1 cut(s)	549
MaeII	ACGT	1 cut(s)	531
MaeIII	GTNAC	3 cut(s)	136, 347, 674
MalI	GATC	2 cut(s)	657, 670
MboI	GATC	2 cut(s)	655, 668
MboII	GAAGA	4 cut(s)	134, 498, 596, 656
MflI	RGATCY	1 cut(s)	668
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	3 cut(s)	69, 243, 311
MlyI	GAGTC	1 cut(s)	499
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	6 cut(s)	25, 33, 54, 478, 593, 740
Mph1103I	ATGCAT	1 cut(s)	562
MroXI	GAANNNNTTC	1 cut(s)	305
MseI	TTAA	2 cut(s)	87, 273
MslI	CAYNNNNRTG	2 cut(s)	132, 465
MspA1I	CMGCKG	2 cut(s)	29, 290
MspR9I	CCNGG	1 cut(s)	255
Mva1269I	GAATGC	1 cut(s)	471
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	1 cut(s)	266
NdeII	GATC	2 cut(s)	655, 668
NlaIII	CATG	1 cut(s)	564
NlaIV	GGNNCC	1 cut(s)	613
NmuCI	GTSAC	2 cut(s)	136, 674
NsiI	ATGCAT	1 cut(s)	562
NspI	RCATGY	1 cut(s)	564
NspV	TTCGAA	1 cut(s)	77
PceI	AGGCCT	1 cut(s)	43
PctI	GAATGC	1 cut(s)	471
PdmI	GAANNNNTTC	1 cut(s)	305
PfeI	GAWTC	5 cut(s)	181, 398, 605, 740, 763
PflMI	CCANNNNNTGG	1 cut(s)	221
PkrI	GCNGC	2 cut(s)	23, 634
PleI	GAGTC	1 cut(s)	498
PpsI	GAGTC	1 cut(s)	498
PpuMI	RGGWCCY	1 cut(s)	611
Psp124BI	GAGCTC	1 cut(s)	100
Psp5II	RGGWCCY	1 cut(s)	611
Psp6I	CCWGG	1 cut(s)	253
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	613
PspPI	GGNCC	2 cut(s)	212, 611
PspPPI	RGGWCCY	1 cut(s)	611
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	668
PvuII	CAGCTG	1 cut(s)	29
RsaI	GTAC	5 cut(s)	145, 393, 498, 565, 727
RsaNI	GTAC	5 cut(s)	144, 392, 497, 564, 726
RseI	CAYNNNNRTG	2 cut(s)	132, 465
SacI	GAGCTC	1 cut(s)	100
SaqAI	TTAA	2 cut(s)	87, 273
SatI	GCNGC	2 cut(s)	22, 633
Sau3AI	GATC	2 cut(s)	655, 668
Sau96I	GGNCC	2 cut(s)	212, 611
SchI	GAGTC	1 cut(s)	499
ScrFI	CCNGG	1 cut(s)	255
SduI	GDGCHC	1 cut(s)	100
SfaNI	GCATC	1 cut(s)	256
SfuI	TTCGAA	1 cut(s)	77
SinI	GGWCC	2 cut(s)	212, 611
SmiMI	CAYNNNNRTG	2 cut(s)	132, 465
Sse9I	AATT	3 cut(s)	69, 243, 311
SseBI	AGGCCT	1 cut(s)	43
SsiI	CCGC	5 cut(s)	21, 56, 173, 234, 288
SspI	AATATT	2 cut(s)	208, 278
SspMI	CTAG	1 cut(s)	549
SstI	GAGCTC	1 cut(s)	100
StuI	AGGCCT	1 cut(s)	43
StyD4I	CCNGG	1 cut(s)	253
TaaI	ACNGT	2 cut(s)	391, 479
TaiI	ACGT	1 cut(s)	534
TaqI	TCGA	4 cut(s)	77, 493, 509, 598
TaqII	GACCGA	1 cut(s)	180
TasI	AATT	3 cut(s)	69, 243, 311
TatI	WGTACW	3 cut(s)	143, 496, 563
TauI	GCSGC	1 cut(s)	24
TfiI	GAWTC	5 cut(s)	181, 398, 605, 740, 763
Tru1I	TTAA	2 cut(s)	87, 273
Tru9I	TTAA	2 cut(s)	87, 273
TseFI	GTSAC	2 cut(s)	136, 674
TseI	GCWGC	1 cut(s)	632
Tsp45I	GTSAC	2 cut(s)	136, 674
TspDTI	ATGAA	1 cut(s)	708
Van91I	CCANNNNNTGG	1 cut(s)	221
VpaK11BI	GGWCC	2 cut(s)	212, 611
XapI	RAATTY	1 cut(s)	69
XceI	RCATGY	1 cut(s)	564
XmnI	GAANNNNTTC	1 cut(s)	305
XspI	CTAG	1 cut(s)	549
Zsp2I	ATGCAT	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.