Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006067

Physical Location & Seq

Genomic Coordinates Reverse (-)

4342652 .. 4344027

Gene Structure 1376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g06280.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGCCGGGAACCATCAATATTTCAGTTCTCCAGTTCATGGACCTTCCTTCACCACCTTCTTCCCCAATATCCATCAAGGTTTCTATGGGAAAAAGAGAGTGCCAAGCTTGGGACAAGGGAGACTTTACCTTCGCATTGACGACCCTTCGCGAGAATTTGGTTCTTCTTCTTCAAGATTCCGAGGGGAATGAGATATCGCACGCAGGCGTTGAGGTTAAGTCGATAGTCGAGAAGGGTCTTTGGGACGACTTGTTTCCCCTCAAAGGAGGCGGGTTCGTGCGTATGAAGTTGGAGTTTGTGCTCAACGAAGAAGAGCGCAACAAAATCCGAATGATGAGAGAATCTGCAGTGAAAAAGAAACAAGGGGAGTTGATCAATAGCAGTCCCAACAGTGTGCAAAGTACTCCGAGTGCTGGGGTGAATGTGGCATCATCATTGTACCTTCACGAAGAGATCTCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

17.05

Weight (kDa)

5.31

Isoelectric Point (pI)

61.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56850 AT5G56850 AT5G56850 AT5G56850 AT5G56850 AT5G56850 AT5G56850 AT5G56850
fragaria_vesca	FvH4_1g07370 FvH4_1g07370 FvH4_1g07370 FvH4_1g07370
malus_domestica	MD02G1078500.v1.1 MD15G1206500.v1.1
prunus_persica	Prupe.7G210300_v2.0.a1
pyrus_communis	pycom02g06280 pycom15g18290
rosa_chinensis	RchiOBHm_Chr2g0093251
rosa_laevigata	RLG00000016383
rosa_multiflora	Rmu_sc0003724.1_g000019
rosa_roxburghii	Rroxscaffold_2G00148340
rosa_rugosa	Rorug02G0033900
rosa_samantha	Rh2AG080200 Rh2BG081200 Rh2CG083600 Rh2DG079100
rosa_wichuraiana	Rw2G006680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	37
AccII	CGCG	1 cut(s)	150
AciI	CCGC	1 cut(s)	270
AcsI	RAATTY	1 cut(s)	154
AfaI	GTAC	2 cut(s)	403, 440
AfiI	CCNNNNNNNGG	4 cut(s)	37, 109, 263, 413
AgsI	TTSAA	1 cut(s)	173
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	1 cut(s)	114
ApoI	RAATTY	1 cut(s)	154
ArsI	GACNNNNNNTTYG	2 cut(s)	113, 145
AspLEI	GCGC	1 cut(s)	318
AspS9I	GGNCC	1 cut(s)	40
AsuC2I	CCSGG	1 cut(s)	6
AsuHPI	GGTGA	2 cut(s)	42, 430
AvaII	GGWCC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	303
BccI	CCATC	2 cut(s)	20, 80
BclI	TGATCA	1 cut(s)	372
BcnI	CCSGG	1 cut(s)	6
BcoDI	GTCTC	1 cut(s)	114
BfmI	CTRYAG	1 cut(s)	345
BglII	AGATCT	1 cut(s)	453
BmcAI	AGTACT	1 cut(s)	403
Bme1390I	CCNGG	1 cut(s)	6
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	10
BmrFI	CCNGG	1 cut(s)	6
BmsI	GCATC	1 cut(s)	437
BpmI	CTGGAG	1 cut(s)	14
BpuMI	CCSGG	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	4 cut(s)	37, 109, 263, 413
Bse1I	ACTGG	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	180
BseLI	CCNNNNNNNGG	4 cut(s)	37, 109, 263, 413
BseNI	ACTGG	1 cut(s)	31
BseYI	CCCAGC	1 cut(s)	413
Bsh1236I	CGCG	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	5
BslFI	GGGAC	3 cut(s)	125, 257, 369
BslI	CCNNNNNNNGG	4 cut(s)	37, 109, 263, 413
BsmAI	GTCTC	1 cut(s)	114
BsmFI	GGGAC	3 cut(s)	125, 257, 369
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	2 cut(s)	372, 453
Bsp68I	TCGCGA	1 cut(s)	150
BspACI	CCGC	1 cut(s)	270
BspFNI	CGCG	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	10
BspMAI	CTGCAG	1 cut(s)	349
BspQI	GCTCTTC	1 cut(s)	306
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	2 cut(s)	372, 453
Bst4CI	ACNGT	1 cut(s)	392
Bst6I	CTCTTC	2 cut(s)	306, 444
BstC8I	GCNNGC	2 cut(s)	201, 205
BstDEI	CTNAG	1 cut(s)	457
BstFNI	CGCG	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	2 cut(s)	375, 456
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	2 cut(s)	372, 453
BstSCI	CCNGG	1 cut(s)	4
BstSFI	CTRYAG	1 cut(s)	345
BstUI	CGCG	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	453
BstYI	RGATCY	1 cut(s)	453
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	2 cut(s)	354, 397
BtuMI	TCGCGA	1 cut(s)	150
Cac8I	GCNNGC	2 cut(s)	201, 205
CfoI	GCGC	1 cut(s)	318
Cfr13I	GGNCC	1 cut(s)	40
Csp6I	GTAC	2 cut(s)	402, 439
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	1 cut(s)	107
CviKI_1	RGCY	1 cut(s)	107
CviQI	GTAC	2 cut(s)	402, 439
DdeI	CTNAG	1 cut(s)	457
DpnI	GATC	2 cut(s)	374, 455
DpnII	GATC	2 cut(s)	372, 453
Eam1104I	CTCTTC	2 cut(s)	306, 444
EarI	CTCTTC	2 cut(s)	306, 444
Eco32I	GATATC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	40
EcoRV	GATATC	1 cut(s)	195
FaeI	CATG	1 cut(s)	40
FaiI	YATR	3 cut(s)	38, 86, 284
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FaqI	GGGAC	3 cut(s)	125, 257, 369
FatI	CATG	1 cut(s)	36
FauI	CCCGC	1 cut(s)	263
FbaI	TGATCA	1 cut(s)	372
GlaI	GCGC	1 cut(s)	317
GsaI	CCCAGC	1 cut(s)	417
GsuI	CTGGAG	1 cut(s)	14
HapII	CCGG	1 cut(s)	5
HhaI	GCGC	1 cut(s)	318
Hin1II	CATG	1 cut(s)	40
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HindIII	AAGCTT	1 cut(s)	105
HinfI	GANTC	2 cut(s)	176, 341
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	2 cut(s)	42, 430
Hpy188I	TCNGA	4 cut(s)	181, 329, 408, 460
Hpy188III	TCNNGA	4 cut(s)	149, 173, 229, 446
HpyAV	CCTTC	7 cut(s)	53, 57, 66, 139, 155, 226, 452
HpyCH4III	ACNGT	1 cut(s)	392
HpyCH4V	TGCA	2 cut(s)	347, 397
HpyF3I	CTNAG	1 cut(s)	457
Hsp92II	CATG	1 cut(s)	40
HspAI	GCGC	1 cut(s)	316
Ksp22I	TGATCA	1 cut(s)	372
Kzo9I	GATC	2 cut(s)	372, 453
LguI	GCTCTTC	1 cut(s)	306
LpnPI	CCDG	4 cut(s)	18, 44, 189, 399
LweI	GCATC	1 cut(s)	437
MalI	GATC	2 cut(s)	374, 455
MboI	GATC	2 cut(s)	372, 453
MboII	GAAGA	7 cut(s)	51, 155, 158, 161, 320, 323, 461
MflI	RGATCY	1 cut(s)	453
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	1 cut(s)	154
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	4 cut(s)	175, 205, 260, 269
MseI	TTAA	1 cut(s)	216
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	6
MvnI	CGCG	1 cut(s)	150
NciI	CCSGG	1 cut(s)	6
NdeII	GATC	2 cut(s)	372, 453
NlaIII	CATG	1 cut(s)	40
NlaIV	GGNNCC	1 cut(s)	10
NruI	TCGCGA	1 cut(s)	150
PciSI	GCTCTTC	1 cut(s)	306
PfeI	GAWTC	2 cut(s)	176, 341
PflMI	CCANNNNNTGG	1 cut(s)	37
PspFI	CCCAGC	1 cut(s)	413
PspN4I	GGNNCC	1 cut(s)	10
PspPI	GGNCC	1 cut(s)	40
PstI	CTGCAG	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	453
RruI	TCGCGA	1 cut(s)	150
RsaI	GTAC	2 cut(s)	403, 440
RsaNI	GTAC	2 cut(s)	402, 439
SapI	GCTCTTC	1 cut(s)	306
SaqAI	TTAA	1 cut(s)	216
Sau3AI	GATC	2 cut(s)	372, 453
Sau96I	GGNCC	1 cut(s)	40
ScaI	AGTACT	1 cut(s)	403
ScrFI	CCNGG	1 cut(s)	6
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	7 cut(s)	45, 58, 81, 109, 131, 216, 444
SfaNI	GCATC	1 cut(s)	437
SfcI	CTRYAG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	40
Sse9I	AATT	1 cut(s)	154
SsiI	CCGC	1 cut(s)	270
SspI	AATATT	1 cut(s)	19
StyD4I	CCNGG	1 cut(s)	4
TaaI	ACNGT	1 cut(s)	392
TaqI	TCGA	2 cut(s)	221, 228
TasI	AATT	1 cut(s)	154
TatI	WGTACW	1 cut(s)	401
TfiI	GAWTC	2 cut(s)	176, 341
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	2 cut(s)	354, 397
TspDTI	ATGAA	2 cut(s)	25, 299
TspRI	CASTG	2 cut(s)	354, 397
Van91I	CCANNNNNTGG	1 cut(s)	37
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	1 cut(s)	154
ZrmI	AGTACT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.